View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17324_high_1 (Length: 722)
Name: NF17324_high_1
Description: NF17324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17324_high_1 |
 | |
|
| [»] scaffold0201 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 537; Significance: 0; HSPs: 21)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 42 - 714
Target Start/End: Complemental strand, 23499069 - 23498403
Alignment:
| Q |
42 |
taattcctttagaaggatgaaaaatttaagatatcttaaaatctataataaatctagaggaaacacatgcaatgtgtactttcccgatggtcttgagtgg |
141 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
23499069 |
taattcctttagatggatgacaaatttaagatatcttaaaatctataataaatctagaagaagcacatccaatgtgtactttctcgatggtcttgagtgg |
23498970 |
T |
|
| Q |
142 |
atttctgataaattgaggtatcttcgatgggaaggatactgtcttgagtatttgccatcaaccttttgtgctgaaatgctcatagagcttcacttgagtc |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23498969 |
atttctgataaattgaggtatcttcgatgggaaggatactgtcttgagtatttgccatcaaccttttgtgctgaaatgctcatagagcttcacttgagtc |
23498870 |
T |
|
| Q |
242 |
atagcaagcttaaaaagctctgggttggagttcaggtacaaatgtgtttggatatacttgataatttgttgaagtatgaaaggaagtctaatgcttattc |
341 |
Q |
| |
|
||||||||||||||||||| |||| |||||||||||||||| | |||||||||||||||| |||||||| ||||||||| ||||||||||||||| |||| |
|
|
| T |
23498869 |
atagcaagcttaaaaagctatgggatggagttcaggtacaattctgtttggatatacttgttaatttgtcgaagtatgagaggaagtctaatgctcattc |
23498770 |
T |
|
| Q |
342 |
ttaaaaagtctctatatatgcttaattattaggtttagtttctcttttaatcaacactcgcacatgattgtgaatttattggtttctaagcaatgtcgtt |
441 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||| ||||| |||||||| ||||||| ||||| ||| |
|
|
| T |
23498769 |
ttaaaaagtctctatttatgctta---attaggtttagtttctcttttaatcaacactcacacgtgattatgaatttaacggtttct---caatggtgtt |
23498676 |
T |
|
| Q |
442 |
tttatttcttgttacagaatcttgtgaatctaaacatactttggcttgaatcctccaaaaatctgattgagatcccagatttatctaaggctacaaatct |
541 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
23498675 |
tttatttcttgttacagaatcttgtgaatctaaacatactttggcttgaatcctccaaaaatctgattgagatcccagacttatctaaggctacaaatct |
23498576 |
T |
|
| Q |
542 |
tcatagagtatatctttttcaatgtgaaagcctgggtcagctccattcttcgatcttttctctccctgatcttagatatctagatttacgaggttgcaaa |
641 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23498575 |
tcatagagtatatctttttcaatgtgaaagcctgggtcagctccattcttcgatcttttctctccctgatcttagatatctagatttacgaggttgcaaa |
23498476 |
T |
|
| Q |
642 |
aagattaaaagccttaaaaccaaaattcattcaaaatctcttcgtgaactcttactcgatggttgttcatctc |
714 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
23498475 |
aagattgaaagccttaaaaccaacattcattcaaaatctctttgtgaactcttactcgatggttgttcttctc |
23498403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 42 - 386
Target Start/End: Complemental strand, 23447290 - 23446949
Alignment:
| Q |
42 |
taattcctttagaaggatgaaaaatttaagatatcttaaaatctataataaatctagaggaaacacatgcaatgtgtactttcccgatggtcttgagtgg |
141 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
23447290 |
taattcctttagaaggatgacaaatttaagatatcttaaaatctataataaatctagaggaaacacgtgcaatgtgtactttcccgatggtcttgagtgg |
23447191 |
T |
|
| Q |
142 |
atttctgataaattgaggtatcttcgatgggaaggatactgtcttgagtatttgccatcaaccttttgtgctgaaatgctcatagagcttcacttgagtc |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23447190 |
atttctgataaattgaggtatcttcgatgggaaggatactgtcttgagtatttgccatcaaccttttgtgctgaaatgctcatagagcttcacttgagtc |
23447091 |
T |
|
| Q |
242 |
atagcaagcttaaaaagctctgggttggagttcaggtacaaatgtgtttggatatacttgataatttgttgaagtatgaaaggaagtctaatgcttattc |
341 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
23447090 |
atagcaagcttaaaaagctatgggatggagttcaggtacaaatgtgtttggatatacttgttaatttgttgaagtatgagaggaagtctaatgctcattc |
23446991 |
T |
|
| Q |
342 |
ttaaaaagtctctatatatgcttaattattaggtttagtttctct |
386 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
23446990 |
ttaaaaagtctctatttatgctta---attaggtttagtttctct |
23446949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 42 - 386
Target Start/End: Complemental strand, 23478590 - 23478249
Alignment:
| Q |
42 |
taattcctttagaaggatgaaaaatttaagatatcttaaaatctataataaatctagaggaaacacatgcaatgtgtactttcccgatggtcttgagtgg |
141 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23478590 |
taattcctttagaaggatgaaaaatttaagatatcttaaaatctataatatatctagaggaaacacatgcaatgtgtactttcccgatggtcttgagtgg |
23478491 |
T |
|
| Q |
142 |
atttctgataaattgaggtatcttcgatgggaaggatactgtcttgagtatttgccatcaaccttttgtgctgaaatgctcatagagcttcacttgagtc |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23478490 |
atttctgataaattgaggtatcttcgatgggaaggatactgtcttgagtttttgccatcaaccttttgtgctgaaatgctcatagagcttcacttgagtc |
23478391 |
T |
|
| Q |
242 |
atagcaagcttaaaaagctctgggttggagttcaggtacaaatgtgtttggatatacttgataatttgttgaagtatgaaaggaagtctaatgcttattc |
341 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||| |||| |
|
|
| T |
23478390 |
atagcaagcttaaaaagctatgggatggagttcaggtacaaatgtgtttggatatacttgttaattttttgaagtatgagaggaagtctaatgctcattc |
23478291 |
T |
|
| Q |
342 |
ttaaaaagtctctatatatgcttaattattaggtttagtttctct |
386 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
23478290 |
ttaaaaagtctctatttatgctta---attaggtttagtttctct |
23478249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 439 - 708
Target Start/End: Complemental strand, 23478229 - 23477960
Alignment:
| Q |
439 |
gtttttatttcttgttacagaatcttgtgaatctaaacatactttggcttgaatcctccaaaaatctgattgagatcccagatttatctaaggctacaaa |
538 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
23478229 |
gtttttatttcttgttacagaatcttgtgaatctaaacatactttggcttgaatcctccaaaaatctgattgagatcccagacttatctaaggctacaaa |
23478130 |
T |
|
| Q |
539 |
tcttcatagagtatatctttttcaatgtgaaagcctgggtcagctccattcttcgatcttttctctccctgatcttagatatctagatttacgaggttgc |
638 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23478129 |
tcttcatagagtatatctttttcaatgtgaaagcctgggtcagctccattcttctatcttttctctccctgatcttagatatctagatttacgaggttgc |
23478030 |
T |
|
| Q |
639 |
aaaaagattaaaagccttaaaaccaaaattcattcaaaatctcttcgtgaactcttactcgatggttgtt |
708 |
Q |
| |
|
||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
23478029 |
aaaaagattgaaagccttaaaaccaacattcattcaaaatctcttcgtgaactcttacttgatggttgtt |
23477960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 439 - 714
Target Start/End: Complemental strand, 23446929 - 23446654
Alignment:
| Q |
439 |
gtttttatttcttgttacagaatcttgtgaatctaaacatactttggcttgaatcctccaaaaatctgattgagatcccagatttatctaaggctacaaa |
538 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
23446929 |
gtttttatttctttttacagaatcttgtgaatctaaacatactttggcttgaatcctccaaaaatctgattgagatcccagacttatctaaggctacaaa |
23446830 |
T |
|
| Q |
539 |
tcttcatagagtatatctttttcaatgtgaaagcctgggtcagctccattcttcgatcttttctctccctgatcttagatatctagatttacgaggttgc |
638 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
23446829 |
tcttcatagagtatatctttttcaatgtgaaagcctgggtcagctccatccttccatcttttctctccctgatcttagatatctagatttacgagactgc |
23446730 |
T |
|
| Q |
639 |
aaaaagattaaaagccttaaaaccaaaattcattcaaaatctcttcgtgaactcttactcgatggttgttcatctc |
714 |
Q |
| |
|
||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
23446729 |
aaaaagattgaaagccttaaaaccaacattcattcaaaatctcttcgtgaactcttactcgatggttgtgcatctc |
23446654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 415 - 710
Target Start/End: Complemental strand, 23453725 - 23453434
Alignment:
| Q |
415 |
atttattggtttctaagcaatgtcgtttttatttcttgttacagaatcttgtgaatctaaacatactttggcttgaatcctccaaaaatctgattgagat |
514 |
Q |
| |
|
||||| |||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
23453725 |
atttaatggtttctaagcaatgtcatgtttatttattgttacagaatcttgtgaatctaaacatactccggcttgaatcctccaaagatctgattgagat |
23453626 |
T |
|
| Q |
515 |
cccagatttatctaaggctacaaatcttcatagagtatatctttttcaatgtgaaagcctgggtcagctccattcttcgatcttttctctccctgatctt |
614 |
Q |
| |
|
|||||| |||||||||| ||||||||||||| |||| | ||||||||||||||||||| ||||||||||| |||| ||||| | ||||||||||||| |
|
|
| T |
23453625 |
cccagacttatctaaggatacaaatcttcatggagtgt----ttttcaatgtgaaagcctgtgtcagctccatccttccatcttctgtctccctgatctt |
23453530 |
T |
|
| Q |
615 |
agatatctagatttacgaggttgcaaaaagattaaaagccttaaaaccaaaattcattcaaaatctcttcgtgaactcttactcgatggttgttca |
710 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23453529 |
agatatctagatttacgaggttgcaaaaagattgaaagccttaaaaccaacattcattcaaaatctcttcgtgaactcttactcgatggttgttca |
23453434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 44 - 370
Target Start/End: Complemental strand, 23454058 - 23453728
Alignment:
| Q |
44 |
attcctttagaaggatgaaaaatttaagatatcttaaaatctataataaatctagaggaaacacatgcaatgtgtactttcccgatggtcttgagtggat |
143 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||||||||||||||||| ||||| || | |||||||||||| |||||||||| |||||||||||| | |
|
|
| T |
23454058 |
attcctttagaaggatgacaaacttaagatatcttaaaatctataatatatctaatgggagaacatgcaatgtgcactttcccgacggtcttgagtggct |
23453959 |
T |
|
| Q |
144 |
ttctgataaattgaggtatcttcgatgggaaggatactgtcttgagtatttgccatcaaccttttgtgctgaaatgctcatagagcttcacttgagtcat |
243 |
Q |
| |
|
|||| |||||||||||| ||| ||||| |||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
23453958 |
ttctaataaattgaggttccttatgtgggagggatactgccttgagtctttgccaccaaccttttgtgctgaaatgctcatagagcttcacatgggtcat |
23453859 |
T |
|
| Q |
244 |
agcaagcttaaaaagctctgggttggagttcaggtacaaatgtgtttggatatactt----gataatttgttgaagtatgaaaggaagtctaatgcttat |
339 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| | | |||||| || | |||||| ||||||||| |||| || |
|
|
| T |
23453858 |
agcaagcttaaaaagctctgggatggagttcaggtacaaatgtgtttggatatacgtacgtgttaatttatttaggtatgagaggaagtctgatgcacat |
23453759 |
T |
|
| Q |
340 |
tcttaaaaagtctctatatatgcttaattat |
370 |
Q |
| |
|
|||||| |||||||||| ||||||||||||| |
|
|
| T |
23453758 |
tcttaagaagtctctatttatgcttaattat |
23453728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 44 - 286
Target Start/End: Complemental strand, 23404648 - 23404406
Alignment:
| Q |
44 |
attcctttagaaggatgaaaaatttaagatatcttaaaatctataataaatctagaggaaacacatgcaatgtgtactttcccgatggtcttgagtggat |
143 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||||||| ||||||||| ||||| || | |||| |||||||||||||||| || |||||||||||||| |
|
|
| T |
23404648 |
attcctttagaaggatgacaaacttaagatatcttaatatctataatgaatctgatgggagcacaggcaatgtgtactttcctgacggtcttgagtggat |
23404549 |
T |
|
| Q |
144 |
ttctgataaattgaggtatcttcgatgggaaggatactgtcttgagtatttgccatcaaccttttgtgctgaaatgctcatagagcttcacttgagtcat |
243 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||| |||||||||| |||||||||||| ||||||||||||||||| |||||||| | || ||| |
|
|
| T |
23404548 |
ttctgataaattgaggtatcttcgatggaaaagatattgtcttgagtctttgccatcaactttttgtgctgaaatgcttgtagagctttgcatggctcaa |
23404449 |
T |
|
| Q |
244 |
agcaagcttaaaaagctctgggttggagttcaggtacaaatgt |
286 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
23404448 |
agcaagcttaaaaagctctgggatggagttcaggtacaaatgt |
23404406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 44 - 286
Target Start/End: Complemental strand, 23463279 - 23463037
Alignment:
| Q |
44 |
attcctttagaaggatgaaaaatttaagatatcttaaaatctataataaatctagaggaaacacatgcaatgtgtactttcccgatggtcttgagtggat |
143 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| | |||| |||| | ||| || | |||| |||||||||||||||| || |||||||||||||| |
|
|
| T |
23463279 |
attcctttagaaggatgacaaatttaagatatcttcatatctgtaatgattctgatgggagcacaggcaatgtgtactttcctgacggtcttgagtggat |
23463180 |
T |
|
| Q |
144 |
ttctgataaattgaggtatcttcgatgggaaggatactgtcttgagtatttgccatcaaccttttgtgctgaaatgctcatagagcttcacttgagtcat |
243 |
Q |
| |
|
||||||||||||||||||||||| ||||| | ||||||||||||||| |||||||||||||||||||||||||||||| || | ||| | |||||||| |
|
|
| T |
23463179 |
ttctgataaattgaggtatcttctatgggtaagatactgtcttgagtctttgccatcaaccttttgtgctgaaatgcttgtatatctttgcatgagtcat |
23463080 |
T |
|
| Q |
244 |
agcaagcttaaaaagctctgggttggagttcaggtacaaatgt |
286 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
23463079 |
agcaagcttaaaaagctctgggatggagttcaggtacaaatgt |
23463037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 442 - 714
Target Start/End: Complemental strand, 23385961 - 23385689
Alignment:
| Q |
442 |
tttatttcttgttacagaatcttgtgaatctaaacatactttggcttgaatcctccaaaaatctgattgagatcccagatttatctaaggctacaaatct |
541 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||| |||||| |
|
|
| T |
23385961 |
tttatttcttgttacagaatcttgtgaatctaagagtactttggcttgaatcctccaaagatctgattgagatcccagacttatctagggctataaatct |
23385862 |
T |
|
| Q |
542 |
tcatagagtatatctttttcaatgtgaaagcctgggtcagctccattcttcgatcttttctctccctgatcttagatatctagatttacgaggttgcaaa |
641 |
Q |
| |
|
| | ||| || |||| | |||||||||||||| ||||||||||| | || ||||||||||||||| ||| ||||||||||||| ||||||||| | |
|
|
| T |
23385861 |
tgacagaatacatctctcggaatgtgaaagcctgcgtcagctccatccatccatcttttctctccctcgaattatatatctagatttaagaggttgcata |
23385762 |
T |
|
| Q |
642 |
aagattaaaagccttaaaaccaaaattcattcaaaatctcttcgtgaactcttactcgatggttgttcatctc |
714 |
Q |
| |
|
|||||| ||||||||||| |||| ||||||||||||||||| ||| ||| |||||| ||||||||||||||| |
|
|
| T |
23385761 |
aagattgaaagccttaaatccaacattcattcaaaatctctctgtgtacttttactcaatggttgttcatctc |
23385689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 44 - 286
Target Start/End: Complemental strand, 23386274 - 23386035
Alignment:
| Q |
44 |
attcctttagaaggatgaaaaatttaagatatcttaaaatctataataaatctagaggaaacacatgcaatgtgtactttcccgatggtcttgagtggat |
143 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| |||||| | |||| || | |||| |||||||||||||||| || |||||||||||||| |
|
|
| T |
23386274 |
attcctttagaaggatgacaaatttaagatatcttaatatctatga---atctgatgggagcacaggcaatgtgtactttcctgacggtcttgagtggat |
23386178 |
T |
|
| Q |
144 |
ttctgataaattgaggtatcttcgatgggaaggatactgtcttgagtatttgccatcaaccttttgtgctgaaatgctcatagagcttcacttgagtcat |
243 |
Q |
| |
|
||| |||||||||||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||||||| |||||||| | ||| ||| |
|
|
| T |
23386177 |
ttcggataaattgaggtatcttcgatggaaaagatactgtcttgagtctttgccatcaaccttttgtgctgaaatgcttgtagagctttgcatgaatcaa |
23386078 |
T |
|
| Q |
244 |
agcaagcttaaaaagctctgggttggagttcaggtacaaatgt |
286 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
23386077 |
agcaagcttaaaaagctctgggatggagttcaggtacaaatgt |
23386035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 44 - 246
Target Start/End: Complemental strand, 23468537 - 23468335
Alignment:
| Q |
44 |
attcctttagaaggatgaaaaatttaagatatcttaaaatctataataaatctagaggaaacacatgcaatgtgtactttcccgatggtcttgagtggat |
143 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||| |||| || | ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23468537 |
attcctttagaaggatgaaaaatataagatatcttaaaatctataatatatctgatgggagcacatgcaatgtgtactttcccgatggtcttgagtggat |
23468438 |
T |
|
| Q |
144 |
ttctgataaattgaggtatcttcgatgggaaggatactgtcttgagtatttgccatcaaccttttgtgctgaaatgctcatagagcttcacttgagtcat |
243 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||| ||||| || | |||||||| |
|
|
| T |
23468437 |
ttctgataaattgaggtaccttcgatgggatggatactgtcttgaatctttgccatcaaccttttgtgctgaaatgcttgtagagatttgcatgagtcat |
23468338 |
T |
|
| Q |
244 |
agc |
246 |
Q |
| |
|
||| |
|
|
| T |
23468337 |
agc |
23468335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 442 - 714
Target Start/End: Complemental strand, 23404332 - 23404060
Alignment:
| Q |
442 |
tttatttcttgttacagaatcttgtgaatctaaacatactttggcttgaatcctccaaaaatctgattgagatcccagatttatctaaggctacaaatct |
541 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
23404332 |
tttatttcttgttacagaatcttgtgaatctaagaacactttggcttgaatcctccaaagatctgattgagatcccagacttatctagggctacaaatct |
23404233 |
T |
|
| Q |
542 |
tcatagagtatatctttttcaatgtgaaagcctgggtcagctccattcttcgatcttttctctccctgatcttagatatctagatttacgaggttgcaaa |
641 |
Q |
| |
|
| || ||| ||| | ||||||||||| || |||| |||||| | || ||||||||||||||| | ||| ||||||||| ||| ||||||||| | |
|
|
| T |
23404232 |
tgctattgtacttctctcggaatgtgaaagcttgcgtcaactccatccatccatcttttctctccctcaacttcaatatctagacttaagaggttgcata |
23404133 |
T |
|
| Q |
642 |
aagattaaaagccttaaaaccaaaattcattcaaaatctcttcgtgaactcttactcgatggttgttcatctc |
714 |
Q |
| |
|
| ||| ||||||||||||| || |||||||||||||||||| || ||||||||||| ||||||||||||||| |
|
|
| T |
23404132 |
agtattgaaagccttaaaacaaacattcattcaaaatctctttgtcaactcttactcaatggttgttcatctc |
23404060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 442 - 714
Target Start/End: Complemental strand, 23351623 - 23351351
Alignment:
| Q |
442 |
tttatttcttgttacagaatcttgtgaatctaaacatactttggcttgaatcctccaaaaatctgattgagatcccagatttatctaaggctacaaatct |
541 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| | || |||| ||||||||||| ||||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
23351623 |
tttatttcttattacagaatcttgtgaatctaagatcaattatgcttcaatcctccaaagatctgattgagatcccagacttatctagggctacaaatct |
23351524 |
T |
|
| Q |
542 |
tcatagagtatatctttttcaatgtgaaagcctgggtcagctccattcttcgatcttttctctccctgatcttagatatctagatttacgaggttgcaaa |
641 |
Q |
| |
|
| | ||||||||||| | |||||||||||||||| ||||||||||| | || ||||||||||||||| |||| || |||||||||| || ||||| | |
|
|
| T |
23351523 |
tgaaagagtatatctctgtcaatgtgaaagcctgcgtcagctccatccatccatcttttctctccctcgacttatatttctagatttagaagattgcata |
23351424 |
T |
|
| Q |
642 |
aagattaaaagccttaaaaccaaaattcattcaaaatctcttcgtgaactcttactcgatggttgttcatctc |
714 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||||||||||| || |||| ||||| ||| |||||||||| |
|
|
| T |
23351423 |
aagattgaaagccttaaaaccaacattcattcaaaatctctttgtaaacttaaactcggtggctgttcatctc |
23351351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 44 - 301
Target Start/End: Complemental strand, 23472443 - 23472187
Alignment:
| Q |
44 |
attcctttagaaggatgaaaaatttaagatatcttaaaatctataataaatctagaggaaacacatgcaatgtgtactttcccgatggtcttgagtggat |
143 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||||||| || |||||| ||| | || | || ||||||||| | ||||| |||||||| |||||| | |
|
|
| T |
23472443 |
attcctttagaaggatgacaaacttaagatatcttaagattcataatatatccaacgggagcatatgcaatgtacattttcctgatggtctcgagtggct |
23472344 |
T |
|
| Q |
144 |
ttctgataaattgaggtatcttcgatgggaaggatactgtcttgagtatttgccatcaaccttttgtgctgaaatgctcatagagcttcacttgagtcat |
243 |
Q |
| |
|
|||||||||||||||||| |||| |||||| ||||| |||| ||||| ||| ||||||| |||||||||||||||||| ||||||||||| ||| |||| |
|
|
| T |
23472343 |
ttctgataaattgaggtaccttcaatgggagggatattgtcctgagtcttttccatcaaacttttgtgctgaaatgcttgtagagcttcacatgactcat |
23472244 |
T |
|
| Q |
244 |
agcaagcttaaaaagctctgggttggagttcaggtacaaatgtgtttggatatacttg |
301 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||| |
|
|
| T |
23472243 |
agcaagcttaaaaagctctgggatggagttcaggtacaaa-atgtttggatgtacttg |
23472187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 442 - 714
Target Start/End: Complemental strand, 23462951 - 23462679
Alignment:
| Q |
442 |
tttatttcttgttacagaatcttgtgaatctaaacatactttggcttgaatcctccaaaaatctgattgagatcccagatttatctaaggctacaaatct |
541 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | |||||||||| |||||||||| ||||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
23462951 |
tttatttcttgttacagaatcttgtgaatctaagaacactttggcttcgatcctccaaagatctgattgagatcccagacttatctagggctacaaatct |
23462852 |
T |
|
| Q |
542 |
tcatagagtatatctttttcaatgtgaaagcctgggtcagctccattcttcgatcttttctctccctgatcttagatatctagatttacgaggttgcaaa |
641 |
Q |
| |
|
| | ||| ||| | ||||||||||| || |||| |||||| | || ||||||||||||||| | ||| ||||||||| ||| ||||||||| | |
|
|
| T |
23462851 |
tgttgttgtacttctctcggaatgtgaaagcttgcgtcaactccatccatccatcttttctctccctcaacttcaatatctagacttaagaggttgcata |
23462752 |
T |
|
| Q |
642 |
aagattaaaagccttaaaaccaaaattcattcaaaatctcttcgtgaactcttactcgatggttgttcatctc |
714 |
Q |
| |
|
| ||| ||||||||||||| || ||||||||||||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
23462751 |
agtattgaaagccttaaaacaaacattcattcaaaatctcttcgtcaactcttactcaatggttgttcatctc |
23462679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 442 - 714
Target Start/End: Complemental strand, 23439526 - 23439253
Alignment:
| Q |
442 |
tttatttcttgttacagaatcttgtgaa-tctaaacatactttggcttgaatcctccaaaaatctgattgagatcccagatttatctaaggctacaaatc |
540 |
Q |
| |
|
||||||||||||||||||||||||| || ||||| || | | || ||| | | ||||||| |||||||||||||||| || ||||||| ||||||||||| |
|
|
| T |
23439526 |
tttatttcttgttacagaatcttgtaaaatctaatcacaatctgccttaattactccaaagatctgattgagatccccgacttatctagggctacaaatc |
23439427 |
T |
|
| Q |
541 |
ttcatagagtatatctttttcaatgtgaaagcctgggtcagctccattcttcgatcttttctctccctgatcttagatatctagatttacgaggttgcaa |
640 |
Q |
| |
|
|| |||| || ||| | ||||||||||||| || ||||||||||| | || ||||||||||||||| |||| || |||||||||| ||||||||| |
|
|
| T |
23439426 |
ttggaagagcatctctctgtcaatgtgaaagcttgcgtcagctccatccatccatcttttctctccctcgacttacatttctagatttaggaggttgcat |
23439327 |
T |
|
| Q |
641 |
aaagattaaaagccttaaaaccaaaattcattcaaaatctcttcgtgaactcttactcgatggttgttcatctc |
714 |
Q |
| |
|
| ||| ||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
23439326 |
tactattgaaagccttaaaacgaacattcattcaaaatctcttcgtgaactcttactggatggttgttcatctc |
23439253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 44 - 301
Target Start/End: Complemental strand, 23439908 - 23439651
Alignment:
| Q |
44 |
attcctttagaaggatgaaaaatttaagatatcttaaaatctataataaatctagaggaaacacatgcaatgtgtactttcccgatggtcttgagtggat |
143 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||||| || |||||| ||| | || | || ||||||||| | ||||| |||||||| |||||| | |
|
|
| T |
23439908 |
attcctttagaaggatggcaaacttaagatatcttaagattcataatatatccaacgggagcatatgcaatgtacattttcctgatggtctcgagtggct |
23439809 |
T |
|
| Q |
144 |
ttctgataaattgaggtatcttcgatgggaaggatactgtcttgagtatttgccatcaaccttttgtgctgaaatgctcatagagcttcacttgagtcat |
243 |
Q |
| |
|
|||||||||||||||||| |||| |||||| ||||| |||||| ||| ||| ||||||| |||||||||||||||||| |||||||| | ||| |||| |
|
|
| T |
23439808 |
ttctgataaattgaggtaccttcaatgggagggatattgtctttagtcttttccatcaaacttttgtgctgaaatgcttgtagagcttagcatgactcat |
23439709 |
T |
|
| Q |
244 |
agcaagcttaaaaagctctgggttggagttcaggtacaaatgtgtttggatatacttg |
301 |
Q |
| |
|
|||||||||||||| ||||| | |||||||||||||||||| |||||||||||||||| |
|
|
| T |
23439708 |
agcaagcttaaaaatctctgagatggagttcaggtacaaatatgtttggatatacttg |
23439651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 44 - 282
Target Start/End: Complemental strand, 23351940 - 23351699
Alignment:
| Q |
44 |
attcctttagaaggatgaaaaatttaagatatcttaaaatctataataa---atctagaggaaacacatgcaatgtgtactttcccgatggtcttgagtg |
140 |
Q |
| |
|
||||||||| |||||||| ||| |||||||||||| | || ||| |||| ||| | || | || ||||||||| |||| || || ||||| ||||| |
|
|
| T |
23351940 |
attcctttaaaaggatgacaaacttaagatatcttgatatttattataatatatccaacgggagcatatgcaatgtacacttacctgacggtctcgagtg |
23351841 |
T |
|
| Q |
141 |
gatttctgataaattgaggtatcttcgatgggaaggatactgtcttgagtatttgccatcaaccttttgtgctgaaatgctcatagagcttcacttgagt |
240 |
Q |
| |
|
||||||||||||||||||| |||| |||||| ||||| |||||||||| |||||||||||||||||||||||||||||| || ||||||||| ||| | |
|
|
| T |
23351840 |
tctttctgataaattgaggtaccttcaatgggatggatattgtcttgagtctttgccatcaaccttttgtgctgaaatgcttattgagcttcacatgact |
23351741 |
T |
|
| Q |
241 |
catagcaagcttaaaaagctctgggttggagttcaggtacaa |
282 |
Q |
| |
|
||| ||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
23351740 |
cattgcaagcttaaaaagctctgggatggagttcaggtacaa |
23351699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 442 - 682
Target Start/End: Complemental strand, 23472061 - 23471821
Alignment:
| Q |
442 |
tttatttcttgttacagaatcttgtgaatctaaacatactttggcttgaatcctccaaaaatctgattgagatcccagatttatctaaggctacaaatct |
541 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || | || | ||| | | ||||||| ||||||||||||||||| | ||||||| |||||||||||| |
|
|
| T |
23472061 |
tttatttcttgttacagaatcttgtgaatctaatcacatttagccttaattactccaaagatctgattgagatcccaaacttatctagggctacaaatct |
23471962 |
T |
|
| Q |
542 |
tcatagagtatatctttttcaatgtgaaagcctgggtcagctccattcttcgatcttttctctccctgatcttagatatctagatttacgaggttgcaaa |
641 |
Q |
| |
|
| | | |||| |||| | | |||||||||||||| |||| |||||| | | ||||||||||||||| |||| ||||||||| ||||||||| | |
|
|
| T |
23471961 |
tgaaaaagtacatctctataaatgtgaaagcctgcgtcatctccatccatacatcttttctctccctcgacttattgtactagatttaggaggttgcata |
23471862 |
T |
|
| Q |
642 |
aagattaaaagccttaaaaccaaaattcattcaaaatctct |
682 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||| ||||| |
|
|
| T |
23471861 |
aagatcgaaagccttaaaaccaatattcattcaaattctct |
23471821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 636 - 683
Target Start/End: Complemental strand, 36001953 - 36001906
Alignment:
| Q |
636 |
tgcaaaaagattaaaagccttaaaaccaaaattcattcaaaatctctt |
683 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
36001953 |
tgcaaaaagattaaaagcctgaaaaccaacattcattcaaaatctctt |
36001906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0201 (Bit Score: 104; Significance: 2e-51; HSPs: 2)
Name: scaffold0201
Description:
Target: scaffold0201; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 130 - 301
Target Start/End: Complemental strand, 11354 - 11183
Alignment:
| Q |
130 |
ggtcttgagtggatttctgataaattgaggtatcttcgatgggaaggatactgtcttgagtatttgccatcaaccttttgtgctgaaatgctcatagagc |
229 |
Q |
| |
|
||||| |||||| ||||||||||||||||||| |||| |||||| |||||| |||||||| ||||||||||||||||| |||| |||||||| |||||| |
|
|
| T |
11354 |
ggtctcgagtggctttctgataaattgaggtaccttcattgggaaagatactctcttgagtctttgccatcaaccttttctgctaaaatgctcgtagagc |
11255 |
T |
|
| Q |
230 |
ttcacttgagtcatagcaagcttaaaaagctctgggttggagttcaggtacaaatgtgtttggatatacttg |
301 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||||| |
|
|
| T |
11254 |
ttcaattgcgtcatagcaagcttaaaaagctctgggaaggagttcaggtaaaaatatgtttggatatacttg |
11183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0201; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 442 - 714
Target Start/End: Complemental strand, 11096 - 10824
Alignment:
| Q |
442 |
tttatttcttgttacagaatcttgtgaatctaaacatactttggcttgaatcctccaaaaatctgattgagatcccagatttatctaaggctacaaatct |
541 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| | |||| |||| | ||| ||| |||| |||||| || |||| ||||| | |||||||||||| |
|
|
| T |
11096 |
tttatttcttgttacaggatcttgtgaatctaacagttctttcgcttccaaactctaaagatctcattgagctctcagacttatccagggctacaaatct |
10997 |
T |
|
| Q |
542 |
tcatagagtatatctttttcaatgtgaaagcctgggtcagctccattcttcgatcttttctctccctgatcttagatatctagatttacgaggttgcaaa |
641 |
Q |
| |
|
||| || ||||||| ||||||| |||||||| ||||||||||| | || ||| ||||||||||| ||| |||||||||||||||||||||| | |
|
|
| T |
10996 |
tcaaagtctatatctcactcaatgtaaaagcctgcgtcagctccatacatccatcctttctctccctcgacttgattatctagatttacgaggttgcata |
10897 |
T |
|
| Q |
642 |
aagattaaaagccttaaaaccaaaattcattcaaaatctcttcgtgaactcttactcgatggttgttcatctc |
714 |
Q |
| |
|
|| ||| ||||||||||| || | ||||||||||||||||| |||| ||| |||||| ||||||||||||||| |
|
|
| T |
10896 |
aatattgaaagccttaaagccgagattcattcaaaatctctccgtgtacttttactcaatggttgttcatctc |
10824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 632 - 682
Target Start/End: Original strand, 12897553 - 12897603
Alignment:
| Q |
632 |
aggttgcaaaaagattaaaagccttaaaaccaaaattcattcaaaatctct |
682 |
Q |
| |
|
|||||||||||||||| ||||||| ||||| || ||||||||||||||||| |
|
|
| T |
12897553 |
aggttgcaaaaagattgaaagcctgaaaactaacattcattcaaaatctct |
12897603 |
T |
|
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Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 284
Target Start/End: Complemental strand, 16121578 - 16121424
Alignment:
| Q |
130 |
ggtcttgagtggatttctgataaattgaggtatcttcgatgggaaggatactgtcttgagtatttgccatcaaccttttgtgctgaaatgctcatagagc |
229 |
Q |
| |
|
|||||||||||| | |||||||||||||| || |||| |||||| || ||||||| ||||||||||||||||||| || ||| ||| |||| | |
|
|
| T |
16121578 |
ggtcttgagtggttgtctgataaattgagctaccttcattgggaatcatttccacttgagtctttgccatcaaccttttgtcctcaaaagcttgtagaac |
16121479 |
T |
|
| Q |
230 |
ttcacttgagtcatagcaagcttaaaaagctctgggttggagttcaggtacaaat |
284 |
Q |
| |
|
|| | ||| ||||||||||||| |||||| |||| | || ||||||||||||| |
|
|
| T |
16121478 |
ttagcatgacccatagcaagcttagaaagctttgggatagaattcaggtacaaat |
16121424 |
T |
|
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