View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17324_high_3 (Length: 492)
Name: NF17324_high_3
Description: NF17324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17324_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 462; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 2 - 475
Target Start/End: Complemental strand, 27145265 - 27144792
Alignment:
| Q |
2 |
ttcccttacttctccatgagacagcagaagatactaccgtatcaggttactttatcccaaaatcaacacgtgtttggataaacgcgtgggcaattggacg |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
27145265 |
ttcccttacttctccatgagacagcagaagatactaccgtatcaggttactttatcccaaaatcaacacgtgtttggataaacgtgtgggcaattggacg |
27145166 |
T |
|
| Q |
102 |
cgacaaaagcgcgtgggacgagccagagaaatttaacccgtcaaggttcttgaacgagggtatgccggatttcaaaggaagtaacttcgagttcattcct |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27145165 |
cgacaaaagcgcgtgggacgagccagagaaatttaacccgtcaaggttcttgaacgagggtatgccggatttcaaaggaagtaacttcgagttcattcct |
27145066 |
T |
|
| Q |
202 |
tttgggtcaggaagaaggtcatgtccagggatgcaacttgggctctatgctgtggaaatgactgtggcaaatttgctacattgcttcaagtggaagttac |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
27145065 |
tttgggtcaggaagaaggtcatgtccagggatgcaacttggactctatgctgtggaaatgactgtggcaaatttgctacattgcttcaagtgggagttac |
27144966 |
T |
|
| Q |
302 |
ctaatggaatgaaaccaagtgagcttgatatgaatgatgtgtttggtctcactgctcctagagctgttcagcttgttgctgtacctagttatcgactcaa |
401 |
Q |
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| T |
27144965 |
ctaatggaatgaaaccaagtgagcttgatatgaatgatgtgtttggtctcactgctcctagagctgttcagcttgttgctgtacctagttatcgactcaa |
27144866 |
T |
|
| Q |
402 |
ttgtcctctttgatttattttctagttggttttatagactgtttcatgatttttcagccaaaaataatgtaatt |
475 |
Q |
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| T |
27144865 |
ttgtcctctttgatttattttctagttggttttatagactgtttcatgatttttcagccaaaaataatgtaatt |
27144792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 10 - 475
Target Start/End: Original strand, 21181603 - 21182068
Alignment:
| Q |
10 |
cttctccatgagacagcagaagatactaccgtatcaggttactttatcccaaaatcaacacgtgtttggataaacgcgtgggcaattggacgcgacaaaa |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21181603 |
cttctccatgagacagcagaagatactaccgtatcaggttactttatcccaaaatcaacacgtgtttggataaacgcgtgggcaattggacgcgacaaaa |
21181702 |
T |
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| Q |
110 |
gcgcgtgggacgagccagagaaatttaacccgtcaaggttcttgaacgagggtatgccggatttcaaaggaagtaacttcgagttcattccttttgggtc |
209 |
Q |
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| T |
21181703 |
gcgcttgggacgagccagagaaatttaacccgtcaaggttcttgaacgagggtatgccggatttcaaaggaagtaacttcgagttcattccttttgggtc |
21181802 |
T |
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| Q |
210 |
aggaagaaggtcatgtccagggatgcaacttgggctctatgctgtggaaatgactgtggcaaatttgctacattgcttcaagtggaagttacctaatgga |
309 |
Q |
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| T |
21181803 |
aggaagaaggtcatgtccagggatgcaacttggactctatgctgtggaaatgactgtggcaaatttgctacattgcttcaagtgggagttacctaatgga |
21181902 |
T |
|
| Q |
310 |
atgaaaccaagtgagcttgatatgaatgatgtgtttggtctcactgctcctagagctgttcagcttgttgctgtacctagttatcgactcaattgtcctc |
409 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21181903 |
atgaaaccaagtgagcttgatatgaatgatgtgttaggtctcactgatcctagagctgttcagcttgttgctgtacctagttatcgactcaattgtcctc |
21182002 |
T |
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| Q |
410 |
tttgatttattttctagttggttttatagactgtttcatgatttttcagccaaaaataatgtaatt |
475 |
Q |
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| T |
21182003 |
tttgatttattttctagttggttttatagactgtttcatgatttttcagccaaaaataatgtaatt |
21182068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 280 - 365
Target Start/End: Original strand, 8262123 - 8262208
Alignment:
| Q |
280 |
cattgcttcaagtggaagttacctaatggaatgaaaccaagtgagcttgatatgaatgatgtgtttggtctcactgctcctagagc |
365 |
Q |
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| T |
8262123 |
cattgcttcacttgggagttgccagatggaatgaagccaagtgagatggatatgagtgatgtatttggactcactgctccaagagc |
8262208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 213
Target Start/End: Original strand, 8262007 - 8262056
Alignment:
| Q |
164 |
tgccggatttcaaaggaagtaacttcgagttcattccttttgggtcagga |
213 |
Q |
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| T |
8262007 |
tgcccgatttcaaaggaagtaattttgagtttattccatttgggtcagga |
8262056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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