View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17324_high_4 (Length: 361)
Name: NF17324_high_4
Description: NF17324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17324_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 16 - 342
Target Start/End: Complemental strand, 31612718 - 31612392
Alignment:
| Q |
16 |
gagatgaaggggaggacaaagaggaggaatacaagggagggaattgaggaggctatgtatagttcgcgccatcttgggaagatgtttgctatgcctgaga |
115 |
Q |
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| T |
31612718 |
gagatgaaggggaggacaaagaggaggaatacaagggagggaattgaggaggctatgtatagttcgcgccatcttgggaagatgtttgctatgcctgaga |
31612619 |
T |
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| Q |
116 |
ggactgcgatgcctgttgagaagaagtagaaggtagacatgcctgcggcaccacgcattgtggggcctacgggctctgtggcaagtacgaaggcgcagag |
215 |
Q |
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| T |
31612618 |
ggactgcgatgcctgttgagaagaagtagaaggtagacatgcctgcggcaccacgcattgtggggcctacgggctctgtggcaagtacgaaggcgcagag |
31612519 |
T |
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| Q |
216 |
gccgacgccacctgtgctgaaaccagtgaggaagcggaggaagaagtaggagatgtaattgggggagaaggctgttaggatgccgaagatgctgtttagt |
315 |
Q |
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| T |
31612518 |
gccgacgccacctgtgctgaaaccagtgaggaagcggaggaagaagtaggagatgtaattgggggagaaggctgttaggatgctgaagatgctgtttagg |
31612419 |
T |
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| Q |
316 |
atgcaaactatcgtgagagatcctttt |
342 |
Q |
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| T |
31612418 |
atgcaaactatcgtgagagatcctttt |
31612392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 133 - 256
Target Start/End: Original strand, 34419052 - 34419175
Alignment:
| Q |
133 |
gagaagaagtagaaggtagacatgcctgcggcaccacgcattgtggggcctacgggctctgtggcaagtacgaaggcgcagaggccgacgccacctgtgc |
232 |
Q |
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| T |
34419052 |
gagaagaagtagaaggtggacattcctgccatgccacgttttgatgggccaatgggctcggtggcaaggacgaaggcgcaaaggccaacaccgccagtgc |
34419151 |
T |
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| Q |
233 |
tgaaaccagtgaggaagcggagga |
256 |
Q |
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| T |
34419152 |
tgaaaccggtgaggaggcggagga |
34419175 |
T |
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