View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17324_high_7 (Length: 322)
Name: NF17324_high_7
Description: NF17324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17324_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 16 - 312
Target Start/End: Original strand, 34763746 - 34764042
Alignment:
| Q |
16 |
caaatggaaccatagcaacagaattatcataggtaagacgactaatagcagaggtttggaatcttgtgttaaaggaagtagcttcatgggtttgaaggaa |
115 |
Q |
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|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34763746 |
caaatggaaccatagcaacagatttttcataggtaagacgactaatagcagaggtttggaatcttgtgttaaaggaagtagcttcatgggtttgaaggaa |
34763845 |
T |
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| Q |
116 |
aagtttaaacaagtcaggagtggatgcaacaacggtaggcatggaaccaaagtaaagagtgtacaaaggtccataacgctttcctaacttgataagagtg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34763846 |
aagtttaaacaagtcaggagtggatgcaacaacggtaggcatggaaccaaagtaaagagtgtacaaaggtccataacgctttcctaacttgataagagtg |
34763945 |
T |
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| Q |
216 |
tggtgaagaagtgggttatccaaaagatgaagatgacctatgaatggaagacgtggtttagggcttggtggatttggaagatggcgaagtgcctttg |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34763946 |
tggtgaagaagtgggttatccaaaagatgaagatgaccaatgaaaggaagacgtggtttagggcttggtggatttggaagatggcgaagtgcctttg |
34764042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 16 - 312
Target Start/End: Complemental strand, 34780366 - 34780070
Alignment:
| Q |
16 |
caaatggaaccatagcaacagaattatcataggtaagacgactaatagcagaggtttggaatcttgtgttaaaggaagtagcttcatgggtttgaaggaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34780366 |
caaatggaaccatagcaacagaattatcataggtaagacgactaatagcagaggtttggaatcttgtgttaaaggaagtagcttcatgggtttgaaggaa |
34780267 |
T |
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| Q |
116 |
aagtttaaacaagtcaggagtggatgcaacaacggtaggcatggaaccaaagtaaagagtgtacaaaggtccataacgctttcctaacttgataagagtg |
215 |
Q |
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| T |
34780266 |
aagtttaaacaagtcaggagtggatgcaacaacggtaggcatggaaccaaagtaaagagtgtacaaagggccataacgctttcctaacttgataagagtg |
34780167 |
T |
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| Q |
216 |
tggtgaagaagtgggttatccaaaagatgaagatgacctatgaatggaagacgtggtttagggcttggtggatttggaagatggcgaagtgcctttg |
312 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
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| T |
34780166 |
tggtgaagaagtgggttatccaaaaggtgaagatgacctatgaatggaagacgtggtttagggcttggtggatttggaaggtggcgaagagcctttg |
34780070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 16 - 312
Target Start/End: Original strand, 34755770 - 34756066
Alignment:
| Q |
16 |
caaatggaaccatagcaacagaattatcataggtaagacgactaatagcagaggtttggaatcttgtgttaaaggaagtagcttcatgggtttgaaggaa |
115 |
Q |
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|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
34755770 |
caaatggaaccatagcaacagagttgtcataggtaagacgactaatagcagaggtttggaaccttgtgttaaaggaagtagcttcatgggtttgaaggaa |
34755869 |
T |
|
| Q |
116 |
aagtttaaacaagtcaggagtggatgcaacaacggtaggcatggaaccaaagtaaagagtgtacaaaggtccataacgctttcctaacttgataagagtg |
215 |
Q |
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|||||||||||||||||| || || ||||||| |||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||| |
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| T |
34755870 |
aagtttaaacaagtcaggggttgaggcaacaatggtaggcatggaaccaaagtaaagagtgtacaaagggccataacgttctcctaacttgataagagtg |
34755969 |
T |
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| Q |
216 |
tggtgaagaagtgggttatccaaaagatgaagatgacctatgaatggaagacgtggtttagggcttggtggatttggaagatggcgaagtgcctttg |
312 |
Q |
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||||||||||| |||||||||||||| ||||||||||| ||| |||||||||| ||||| || || || ||||| ||||| |||||||| ||||||| |
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| T |
34755970 |
tggtgaagaagagggttatccaaaaggtgaagatgaccaatggatggaagacgaggtttgggactcggaggattgggaaggtggcgaagagcctttg |
34756066 |
T |
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