View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17324_high_8 (Length: 310)
Name: NF17324_high_8
Description: NF17324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17324_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 27548738 - 27549022
Alignment:
| Q |
1 |
cattctaacatagtaacaaaaagtaaacataagagctgctttaaaagtgaaattcattgttattattcatcaaacaaaaaatgccttctcaaaatttatc |
100 |
Q |
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||||||||||||| ||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
27548738 |
cattctaacatagaaacaaaaagtaaacataggagctgcttgaaaagtataattcattgttattattcatcaaacaaaaaaagcattctcaaaatttatc |
27548837 |
T |
|
| Q |
101 |
attcttatgataattacatttccaatctctgtagggtctttacaatttgataagatgtctcatgttcaaaatggatctactaacagtaaactatgtcggt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27548838 |
attcttatgataattacatttccaatctctgtagggtctttacaatttgataagatgtctcatgttcaaaatggatctactaacagtaaactatgtcggt |
27548937 |
T |
|
| Q |
201 |
ctcctacaatagtgtgagctttacaagcgagacgttatgtgctggaagacatcttcgttgtgaggaataggaaggccaaccattg |
285 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||| ||||||||||||| |
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| T |
27548938 |
ctcctacaatagtgtgagctttacaagcgagacgttatgtgctggaagacatcttcggtgcaagaaatagtgaggccaaccattg |
27549022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 27946021 - 27945728
Alignment:
| Q |
1 |
cattctaacatagtaacaaaaagtaaacataagagctgctttaaaagtgaaattcattgttattattcatcaaacaaaaaatgccttctcaaaatttatc |
100 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27946021 |
cattctaacatagaaacaaaaagtaaacataagagctgctttaaaagtgaaattcattgttattattcatcaaacaaaaaatgccttctcaaaatttatc |
27945922 |
T |
|
| Q |
101 |
attcttatgataattacatttccaatctctgtagggtctttacaatttgataagatgtctcatgttcaaaatggatctact-aacagtaaactat-gtcg |
198 |
Q |
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| T |
27945921 |
attcttatgataattacatttccaatctctgtagggtctttaaaatttgataagatatctcaagttcaaaatgaatgtagtaaacagtaaactatcatca |
27945822 |
T |
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| Q |
199 |
gtctcctacaatagtgtgagctttacaagcgagacgttatgtgctggaagacatcttcgttgtgaggaataggaaggccaaccattgaattatc |
292 |
Q |
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|||||||| ||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27945821 |
gtctcctataatagtgtgagctcaacaagtgagacattatgtgctggaagacatcttcgttgtgaggaataggaaggccaaccattgaattatc |
27945728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 25 - 285
Target Start/End: Complemental strand, 27437508 - 27437248
Alignment:
| Q |
25 |
aaacataagagctgctttaaaagtgaaattcattgttattattcatcaaacaaaaaatgccttctcaaaatttatcattcttatgataattacatttcca |
124 |
Q |
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||||||| ||||| ||| |||||| |||||||||| |||||||||||||| |||||||| | ||||||| ||||||| ||||||||||||||||||| |
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| T |
27437508 |
aaacataggagctacttgaaaagtcgaattcattgtcattattcatcaaacgaaaaatgcatagtcaaaatctatcatttttatgataattacatttcct |
27437409 |
T |
|
| Q |
125 |
atctctgtagggtctttacaatttgataagatgtctcatgttcaaaatggatctactaacagtaaactatgtcggtctcctacaatagtgtgagctttac |
224 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||| |
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| T |
27437408 |
atctctgtagggtctttacaatttgataagatgtctcatgttcaaaatggatctactaacagtaaactatgccagtctccaacaatagtgtgagctttac |
27437309 |
T |
|
| Q |
225 |
aagcgagacgttatgtgctggaagacatcttcgttgtgaggaataggaaggccaaccattg |
285 |
Q |
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||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||| |
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| T |
27437308 |
aagcgagacattatgtgctggaagacatcttcggtgcaaggaataggaaggccaaccattg |
27437248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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