View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17324_low_1 (Length: 1002)
Name: NF17324_low_1
Description: NF17324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17324_low_1 |
 | |
|
| [»] scaffold1350 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 510; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 10 - 774
Target Start/End: Original strand, 45460879 - 45461647
Alignment:
| Q |
10 |
tcatcaaccacctcattagctactaaaataccatcaagtatttgccaattttttacaaacgttgactgagtatctgagattaccgttcccataacctgac |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45460879 |
tcatcaaccacctcattagctactaaaataccatcaatgatttgccaattttttacaaacgctgactgagtatctgagattaccgttcccataacctgac |
45460978 |
T |
|
| Q |
110 |
gcaaacggtttgccaacaacttcgccaaa-ttttatataagcatcccaccaaagcaatgggtcaaaaatcattcagctgatgcgg-ttgtcaatcttggg |
207 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||| || |
|
|
| T |
45460979 |
gcaaacggtttgccaacaacttcgccaaaattttatataagcatcccaccaaagcaatggggcaaaaatcattcagtcgatgcgggttgtcaatcttagg |
45461078 |
T |
|
| Q |
208 |
aataagagcaatgaaagtgctatttattcctttcgag--acgaccattgcgatgaaattccaacacaaaccgcataatgtcacctttcaattccggccaa |
305 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
45461079 |
aataagatcaatgaaagtgctatttattcctttcgagggacgaccgttgcgatgaaattccaacacaaaccgcataatgtcacctttcaactccgaccaa |
45461178 |
T |
|
| Q |
306 |
aagtctttagtaaaacccattggaatgtcatccagacccggactcttatacccatcgcaatcccacactgccaccttaacttcagtctcattaaaatgat |
405 |
Q |
| |
|
|| |||||| ||||| |||| |||||| ||||| |||||||| ||||||||||||| |||||||||||||| ||||||||||| ||||||| ||| ||| |
|
|
| T |
45461179 |
aaatctttaataaaatccatcggaatgccatccggacccggattcttatacccatcacaatcccacactgcagccttaacttcaatctcattgaaaggat |
45461278 |
T |
|
| Q |
406 |
aaatcaaactatttcctttcaaaacagataatctcccaaaattcatatcatccaccctaggcctattaatgtcatgcgcctggtaaagattttgaaaatg |
505 |
Q |
| |
|
|||||||| ||||||||| ||||||||||| ||||| |||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
45461279 |
aaatcaaagtatttccttccaaaacagatagtctccgaaaattcatatcatccaccctatgcctattaatttcatgcgcctggtaatgattttgaaaata |
45461378 |
T |
|
| Q |
506 |
actgaaaactgcttccctgacttcagaaactccctccacaacatttccttcaactaaagtaaaagagagggcattttttcgacgttttcctgacataata |
605 |
Q |
| |
|
|| ||||||||| | |||||||||| |||||||||||||||||||||||||||||| || |||| |||| |||| |||||||| | ||||||| ||| |
|
|
| T |
45461379 |
gcttaaaactgctgctatgacttcagatactccctccacaacatttccttcaactaaaatagaagaaagggtatttcttcgacgtatgtctgacatgata |
45461478 |
T |
|
| Q |
606 |
gcatgaaaatatttagaatttgcatctccttcctgaagccataatgtttgcgattgttgccacgaaatactagcatttgccctggataaagaatgtaaat |
705 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
45461479 |
gcatgaaaatatttagaatttgcatctccttctcgaagccataatgttcgcgaatgttgccacgaaatactagcattggccctggataaagaatataaat |
45461578 |
T |
|
| Q |
706 |
cagctgacatcgcatgtaaatccgccacttcctccacagacagttcgtccacctctcccctagcctcca |
774 |
Q |
| |
|
|| |||||||| ||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
45461579 |
catctgacatcacatataagtccgccacttcctccacagacagttcgttcacctctcccctagcctcca |
45461647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 10 - 724
Target Start/End: Complemental strand, 4166369 - 4165651
Alignment:
| Q |
10 |
tcatcaaccacctcattagctactaaaataccatcaagtatttgccaattttttacaaacgttgactgagtatctgagattaccgttcccataacctgac |
109 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||||||| ||||| | || ||||||||||| |||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
4166369 |
tcatccaccacctcattagctactagaataccatcaagaatttggcgatcttttacaaacgctgactgagtatccgagattaccgttcccattacctgac |
4166270 |
T |
|
| Q |
110 |
gcaaacggtttgccaacaacttcgccaaa-ttttatataagcatcccaccaaagcaatgggtcaaaaatcattcagctgatgcggttg-tcaatcttggg |
207 |
Q |
| |
|
||||||||||||| | ||||||||||||| |||| ||||| || ||||| | ||||||||| | ||||||||| || |||||| |||||||| || |
|
|
| T |
4166269 |
gcaaacggtttgctagcaacttcgccaaaattttgtataaacagcccactagagcaatggggcgaaaatcattaagacgatgcgcacaatcaatctttgg |
4166170 |
T |
|
| Q |
208 |
aataagagcaatgaaagtgctatttattcctttcgaga--cgaccattgcgatgaaattccaacacaaaccgcataatgtcacctttcaattccggccaa |
305 |
Q |
| |
|
||||||||| || || ||||||||||||||||| |||| ||||| |||||||||||||||| ||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
4166169 |
aataagagcgataaaggtgctatttattccttttgagaggcgaccgttgcgatgaaattccagcacaaaccgcataatgtcacctttcaaatccagccaa |
4166070 |
T |
|
| Q |
306 |
aagtctttagtaaaacccattggaatgtcatccagacccggactcttatacccatcgcaatcccacactgccaccttaacttcagtctcattaaaatgat |
405 |
Q |
| |
|
|| || ||| |||| |||| |||||| ||||| ||||||||||||| || ||||| ||||||||||| || ||||||||||||||||| |||| | | |
|
|
| T |
4166069 |
aattccttaataaatcccaaaggaatgccatccggacccggactcttgtaaccatcacaatcccacaccgcagccttaacttcagtctcagtaaacgggt |
4165970 |
T |
|
| Q |
406 |
aaatcaaactatttcctttcaaaacagataatctcccaaaattcatatcatccaccctaggcctattaatgtcatgcgcctggtaaagattttgaaaatg |
505 |
Q |
| |
|
|||| | |||| ||| | |||||||||||| |||| || ||||||||||||||||||||| ||| |||||||||| ||| | | ||| || || |
|
|
| T |
4165969 |
aaataagggaattttcttccgcaacagataatcttttaaaaagcaaatcatccaccctaggcctattcatgacatgcgcctgataatggtgttggaagtg |
4165870 |
T |
|
| Q |
506 |
actgaaaactgcttccctgacttcagaaactccctccacaacatttccttcaactaaagtaaaagagagggcattttttcgacgttttcctgacataata |
605 |
Q |
| |
|
||||||||||||| ||| ||||| ||||||||||||||||||||||| ||||||||| || | |||| || ||| ||| |||| | || |||||||| |
|
|
| T |
4165869 |
actgaaaactgctgcccgaacttcggaaactccctccacaacatttccatcaactaaaatagatgagatggtgtttcttctacgtctgccggacataatg |
4165770 |
T |
|
| Q |
606 |
gcatgaaaatatttagaatttgcatctccttcctgaagccataatgtttgcgattgttgccacgaaatactagcatttgccctggataaagaatgtaaat |
705 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |||| |||| | | |||||||||||| |||||||| || ||||||||||||||||| ||||||| |
|
|
| T |
4165769 |
gcatgaaaatatttagagtttgcatctccttcccgaagacatagtaatctcgattgttgccatgaaatacttgcgtttgccctggataaagagtgtaaat |
4165670 |
T |
|
| Q |
706 |
cagctgacatcgcatgtaa |
724 |
Q |
| |
|
||| ||||||| ||||||| |
|
|
| T |
4165669 |
cagttgacatctcatgtaa |
4165651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 169; E-Value: 4e-90
Query Start/End: Original strand, 10 - 373
Target Start/End: Original strand, 34207897 - 34208264
Alignment:
| Q |
10 |
tcatcaaccacctcattagctactaaaataccatcaagtatttgccaattttttacaaacgttgactgagtatctgagattaccgttcccataacctgac |
109 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||||||| ||||| | || ||||||||||| |||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
34207897 |
tcatccaccacctcattagctactagaataccatcaagaatttggcgatcttttacaaacgctgactgagtatccgagattaccgttcccattacctgac |
34207996 |
T |
|
| Q |
110 |
gcaaacggtttgccaacaacttcgccaaa-ttttatataagcatcccaccaaagcaatgggtcaaaaatcattcagctgatgcggttg-tcaatcttggg |
207 |
Q |
| |
|
||||||||||||| | ||||||||||||| |||| ||||| || ||||| | ||||||||| | ||||||||| || ||||| | |||||||| || |
|
|
| T |
34207997 |
gcaaacggtttgctagcaacttcgccaaaattttgtataaacagcccactagagcaatggggcgaaaatcattaagacgatgcagacaatcaatctttgg |
34208096 |
T |
|
| Q |
208 |
aataagagcaatgaaagtgctatttattcctttcgaga--cgaccattgcgatgaaattccaacacaaaccgcataatgtcacctttcaattccggccaa |
305 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
34208097 |
aataagagcgatgaaggtgctatttattccttttgagaggcgaccgttgcgatgaaattccaacacaaaccgcataatgtcacctttcaaatccagccaa |
34208196 |
T |
|
| Q |
306 |
aagtctttagtaaaacccattggaatgtcatccagacccggactcttatacccatcgcaatcccacac |
373 |
Q |
| |
|
|| || ||| |||| |||| |||||| ||||| ||||||||||||| || ||||| ||||||||||| |
|
|
| T |
34208197 |
aattccttaataaatcccaaaggaatgccatccggacccggactcttgtaaccatcacaatcccacac |
34208264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 240
Target Start/End: Complemental strand, 40680661 - 40680627
Alignment:
| Q |
206 |
ggaataagagcaatgaaagtgctatttattccttt |
240 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |
|
|
| T |
40680661 |
ggaataagagcaatgaaagtgctattgattccttt |
40680627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 225
Target Start/End: Original strand, 4078968 - 4079057
Alignment:
| Q |
137 |
aattttatataagcatcccaccaaagcaatgggtcaaaaatcattcagctgatgcgg-ttgtcaatcttgggaataagagcaatgaaagt |
225 |
Q |
| |
|
||||||||| || | ||||||||||| ||| |||| ||| ||||| || | ||||| ||||||| ||| |||||||||||||||||||| |
|
|
| T |
4078968 |
aattttatacaaacttcccaccaaagaaataggtcgaaactcattgagacgctgcgggttgtcaacctttggaataagagcaatgaaagt |
4079057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 10 - 685
Target Start/End: Complemental strand, 3152392 - 3151713
Alignment:
| Q |
10 |
tcatcaaccacctcattagctactaaaataccatcaagtatttgccaattttttacaaacgttgactgagtatctgagattaccgttcccataacctgac |
109 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||||||| ||||| | || ||||||||||| ||||| |||||| ||||||||||||||||| ||||||| |
|
|
| T |
3152392 |
tcatccaccacctcattagctactagaataccatcaagaatttggcgatcttttacaaacgctgactaagtatccgagattaccgttcccattacctgac |
3152293 |
T |
|
| Q |
110 |
gcaaacggtttgccaacaacttcgccaaa-ttttatataagcatcccaccaaagcaatgggtcaaaaatcattcagctgatgcggttg-tcaatcttggg |
207 |
Q |
| |
|
||||||||||||| | ||||||||||||| |||| ||||| || ||||| | ||||||||| | ||||||||| || ||||||| |||||||| || |
|
|
| T |
3152292 |
gcaaacggtttgctagcaacttcgccaaaattttgtataaacagcccactagagcaatggggcgaaaatcattaagacgatgcggacaatcaatctttgg |
3152193 |
T |
|
| Q |
208 |
aataagagcaatgaaagtgctatttattcctttcgagacg--accattgcgatgaaattccaacacaaaccgcataatgtcacctttcaattccggccaa |
305 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||| |||| | | | ||||||||||||| || ||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
3152192 |
aataagagcgatgaaggtgctatttattccttttgagaggtgaacgttgcgatgaaatttcagcacaaaccgcataatgtcacctttcaaatccggccaa |
3152093 |
T |
|
| Q |
306 |
aagtctttagtaaaacccattggaatgtcatccagacccggactcttatacccatcgcaatcccacactgccaccttaacttcagtctcattaaaatgat |
405 |
Q |
| |
|
|| || ||| |||| |||| |||||| ||||| ||||||||||||| || ||||| |||| |||||| || ||||||||||||||||| |||| | |
|
|
| T |
3152092 |
aattccttaataaatcccaaaggaatgccatccggacccggactcttgtaaccatcacaattccacaccgcagccttaacttcagtctcagtaaacaggc |
3151993 |
T |
|
| Q |
406 |
aaatcaaactatttcctttcaaaacagataatctcccaaaattcatatcatccaccctaggcctattaatgtcatgcgcctggtaaagattttgaaaatg |
505 |
Q |
| |
|
|||| | |||| ||| | |||||||||||| ||||| | ||||||||||||||||||||| ||| |||||||||| ||| | | ||| || || |
|
|
| T |
3151992 |
aaataagggaattttcttccgcaacagataatcttttaaaatgtaaatcatccaccctaggcctattcatgacatgcgcctgataatggtgttggaagtg |
3151893 |
T |
|
| Q |
506 |
actgaaaactgcttccctgacttcagaaactccctccacaacatttccttcaactaaagtaaaagagagggcattttttcgacgttttcctgacataata |
605 |
Q |
| |
|
||||||||||||| ||| ||||| ||||||||||||||| ||||||| ||||||||| || | |||| || ||| ||| |||| | || |||||||| |
|
|
| T |
3151892 |
actgaaaactgctgcccgaacttcggaaactccctccacatcatttccatcaactaaaatagatgagatggtgtttcttctacgtctgccggacataatg |
3151793 |
T |
|
| Q |
606 |
gcatgaaaatatttagaatttgcatctccttcctgaagccataatgtttgcgattgttgccacgaaatactagcatttgc |
685 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| ||||||||| | | |||||||||||| |||||||| || ||||| |
|
|
| T |
3151792 |
gcatgaaaatatttagagtttgcatctccttcccgaagccatagtaatctcgattgttgccatgaaatacttgcgtttgc |
3151713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 121 - 243
Target Start/End: Original strand, 20637979 - 20638103
Alignment:
| Q |
121 |
gccaacaacttcgccaaa-ttttatataagcatcccaccaaagcaatgggtcaaaaatcattcagctgatg-cggttgtcaatcttgggaataagagcaa |
218 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||| |||||| | ||||| |||| |||||||||||| | || ||||||||||||| |||||||| ||| |
|
|
| T |
20637979 |
gccaacaacttcgccaaaattttataaaagcaacccaccgaggcaataggtcgaaaatcattcagacgttgagggttgtcaatcttaggaataagggcat |
20638078 |
T |
|
| Q |
219 |
tgaaagtgctatttattcctttcga |
243 |
Q |
| |
|
||||||||||||||||| ||||||| |
|
|
| T |
20638079 |
tgaaagtgctatttatttctttcga |
20638103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 70
Target Start/End: Complemental strand, 33514765 - 33514705
Alignment:
| Q |
10 |
tcatcaaccacctcattagctactaaaataccatcaagtatttgccaattttttacaaacg |
70 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||| ||||||| || ||| ||||||| |
|
|
| T |
33514765 |
tcatcaaccacctcattagctatcagaataccatcaagaatttgcctatctttcacaaacg |
33514705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 594 - 671
Target Start/End: Original strand, 20638459 - 20638536
Alignment:
| Q |
594 |
cctgacataatagcatgaaaatatttagaatttgcatctccttcctgaagccataatgtttgcgattgttgccacgaa |
671 |
Q |
| |
|
|||||||| ||||||||||||||||| || || | ||||| ||| ||||||||||| | |||||||||||||||| |
|
|
| T |
20638459 |
cctgacatgatagcatgaaaatatttggagttggtgtctccctcccgaagccataatagtctcgattgttgccacgaa |
20638536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 227; Significance: 1e-124; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-124
Query Start/End: Original strand, 420 - 774
Target Start/End: Complemental strand, 5865149 - 5864795
Alignment:
| Q |
420 |
cctttcaaaacagataatctcccaaaattcatatcatccaccctaggcctattaatgtcatgcgcctggtaaagattttgaaaatgactgaaaactgctt |
519 |
Q |
| |
|
|||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||| ||||||||||||| |
|
|
| T |
5865149 |
ccttccaaaacagatagtctccgaaaattcatatcatccaccctaggcctattaatttcatgcgcctgataatgattttgaaaataactgaaaactgctg |
5865050 |
T |
|
| Q |
520 |
ccctgacttcagaaactccctccacaacatttccttcaactaaagtaaaagagagggcattttttcgacgttttcctgacataatagcatgaaaatattt |
619 |
Q |
| |
|
|| |||||||| ||||||||||||| |||||||||||||||| || | || ||| ||||| |||||||| | |||||||| ||||||||||||||||| |
|
|
| T |
5865049 |
atctaacttcagatactccctccacaaaatttccttcaactaaaatagatgaaaggccatttcttcgacgtctgcctgacatgatagcatgaaaatattt |
5864950 |
T |
|
| Q |
620 |
agaatttgcatctccttcctgaagccataatgtttgcgattgttgccacgaaatactagcatttgccctggataaagaatgtaaatcagctgacatcgca |
719 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||| |||||||||||||| ||||||||||||| ||| |||||||||||||||||||| |||||||| || |
|
|
| T |
5864949 |
agaatttggatctccttcccgaagccataatgttcgcgattgttgccacaaaatactagcattggccttggataaagaatgtaaatcatctgacatcaca |
5864850 |
T |
|
| Q |
720 |
tgtaaatccgccacttcctccacagacagttcgtccacctctcccctagcctcca |
774 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
5864849 |
tgtaagtccgccacttcctccacagacagttcgttcacctctcccctagcctcca |
5864795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 195; E-Value: 1e-105
Query Start/End: Original strand, 16 - 653
Target Start/End: Original strand, 16468936 - 16469577
Alignment:
| Q |
16 |
accacctcattagctactaaaataccatcaagtatttgccaattttttacaaacgttgactgagtatctgagattaccgttcccataacctgacgcaaac |
115 |
Q |
| |
|
||||||||||||||||||| |||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
16468936 |
accacctcattagctactagaataccatcaagaatttggagatcttttacaaacgttgactgagtatctgagattaccgtttccattacctgacgcaaac |
16469035 |
T |
|
| Q |
116 |
ggtttgccaacaacttcgccaaa-ttttatataagcatcccaccaaagcaatgggtcaaaaatcattcagctgatgcggttg-tcaatcttgggaataag |
213 |
Q |
| |
|
| ||| | | |||||||||||| |||| ||||| |||||||| ||||||||| | ||||| ||| || ||||| | |||||||| |||||||| |
|
|
| T |
16469036 |
gattttctagaaacttcgccaaaattttgtataaatgtcccaccagagcaatggggcgaaaataattaagacgatgcagacaatcaatcttaggaataag |
16469135 |
T |
|
| Q |
214 |
agcaatgaaagtgctatttattcctttcga--gacgaccattgcgatgaaattccaacacaaaccgcataatgtcacctttcaattccggccaaaagtct |
311 |
Q |
| |
|
|| ||||| |||||||||||||||| || ||||||| |||||||||||||||||||||| | ||||||||| ||||||| | ||||||||||| || |
|
|
| T |
16469136 |
agtgatgaagatgctatttattccttttgatagacgaccgttgcgatgaaattccaacacaatctgcataatgtgacctttccaatccggccaaaattcc |
16469235 |
T |
|
| Q |
312 |
ttagtaaaacccattggaatgtcatccagacccggactcttatacccatcgcaatcccacactgccaccttaacttcagtctcattaaaatgataaatca |
411 |
Q |
| |
|
||| |||| |||| |||||| || || |||| |||||||| || |||| ||||||||||| | |||||||||||||||| |||| | |||| | |
|
|
| T |
16469236 |
ttaataaatcccaaaggaatgccacccggacctggactcttgtaaccattacaatcccacaccacagccttaacttcagtctcggtaaatgggcaaatga |
16469335 |
T |
|
| Q |
412 |
aactatttcctttcaaaacagataatctcccaaaattcatatcatccaccctaggcctattaatgtcatgcgcctggtaaagattttgaaaatgactgaa |
511 |
Q |
| |
|
|||||||| || || ||||||||| ||||| |||||||||||||||||||||||| ||| |||||||||| ||| | | ||| || |||||||| |
|
|
| T |
16469336 |
gggaatttccttccataatagataatctttgaaaatacatatcatccaccctaggcctattcatgacatgcgcctgataatggtgttggaagtgactgaa |
16469435 |
T |
|
| Q |
512 |
aactgcttccctgacttcagaaactccctccacaacatttccttcaactaaagtaaaagagagggcattttttcgacgttttcctgacataatagcatga |
611 |
Q |
| |
|
||||||| ||| ||||| || ||||||||||| |||||||| ||||||||| || |||||| | | ||| ||| |||| | || |||||||| |||||| |
|
|
| T |
16469436 |
aactgctgcccgaacttcggatactccctccactacatttccatcaactaaaatagaagagatgtcttttcttctacgtctgccggacataatggcatga |
16469535 |
T |
|
| Q |
612 |
aaatatttagaatttgcatctccttcctgaagccataatgtt |
653 |
Q |
| |
|
|||| |||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
16469536 |
aaatgtttagagttttcatctccttcctgaagccataatgtt |
16469577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 10 - 400
Target Start/End: Complemental strand, 1307240 - 1306846
Alignment:
| Q |
10 |
tcatcaaccacctcattagctactaaaataccatcaagtatttgccaattttttacaaacgttgactgagtatctgagattaccgttcccataacctgac |
109 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||||||| ||||| | || ||||||||||| |||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
1307240 |
tcatccaccacctcattagctactagaataccatcaagaatttggcgatcttttacaaacgctgactgagtatccgagattaccgttcccattacctgat |
1307141 |
T |
|
| Q |
110 |
gcaaacggtttgccaacaacttcgccaaa-ttttatataagcatcccaccaaagcaatgggtcaaaaatcattcagctgatgcggttg-tcaatcttggg |
207 |
Q |
| |
|
||||||||||||| | ||||||||||||| |||| ||||| || ||||||| ||||||||| | ||||||||| || ||||||| |||||||| || |
|
|
| T |
1307140 |
gcaaacggtttgctagcaacttcgccaaaattttgtataaacagcccaccagagcaatggggcgaaaatcattaagacgatgcggacaatcaatctttgg |
1307041 |
T |
|
| Q |
208 |
aataagagcaatgaaagtgctatttattcctttcgaga--cgaccattgcgatgaaattccaacacaaaccgcataatgtcacctttcaattccggccaa |
305 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
1307040 |
aataagagcgatgaaggtgctatttattccttttgagagacgaccgttgcgatgaaattccaacacaaaccgcataatgtcacctttcaaatccggccaa |
1306941 |
T |
|
| Q |
306 |
aagtctttagtaaaacccattggaatgtcatccagacccggactcttatacccatcgcaatcccacactgccaccttaacttcagtctcattaaa |
400 |
Q |
| |
|
|| || ||| |||| |||| |||||| ||||| ||||||||||||| || ||||| ||||||||||| || ||||||||||||||||| |||| |
|
|
| T |
1306940 |
aattccttaataaatcccaaaggaatgccatccggacccggactcttgtaaccatcacaatcccacaccgcagccttaacttcagtctcagtaaa |
1306846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 656 - 774
Target Start/End: Original strand, 16520836 - 16520954
Alignment:
| Q |
656 |
cgattgttgccacgaaatactagcatttgccctggataaagaatgtaaatcagctgacatcgcatgtaaatccgccacttcctccacagacagttcgtcc |
755 |
Q |
| |
|
||||||||||||||||||||| || |||||| |||||||||| |||||||||| ||||||| ||||||| ||| | |||||| | |||| || ||| |
|
|
| T |
16520836 |
cgattgttgccacgaaatacttgcgtttgccttggataaagagtgtaaatcagttgacatctcatgtaagtccattatatcctcctcggacaagtcatcc |
16520935 |
T |
|
| Q |
756 |
acctctcccctagcctcca |
774 |
Q |
| |
|
||||| ||||||||||||| |
|
|
| T |
16520936 |
acctcacccctagcctcca |
16520954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 80
Target Start/End: Original strand, 25351790 - 25351860
Alignment:
| Q |
10 |
tcatcaaccacctcattagctactaaaataccatcaagtatttgccaattttttacaaacgttgactgagt |
80 |
Q |
| |
|
||||| |||||||||||||||| ||||| |||||||| ||||| | |||||||||||||| || |||||| |
|
|
| T |
25351790 |
tcatcgaccacctcattagctatcaaaatgccatcaaggatttgtctattttttacaaacgctgtctgagt |
25351860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 70
Target Start/End: Complemental strand, 17576290 - 17576230
Alignment:
| Q |
10 |
tcatcaaccacctcattagctactaaaataccatcaagtatttgccaattttttacaaacg |
70 |
Q |
| |
|
|||||||||||||||||||||| | ||| |||||||| ||||||| |||||| ||||||| |
|
|
| T |
17576290 |
tcatcaaccacctcattagctatcagaatgccatcaagaatttgcctatttttaacaaacg |
17576230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 594 - 700
Target Start/End: Complemental strand, 17711581 - 17711475
Alignment:
| Q |
594 |
cctgacataatagcatgaaaatatttagaatttgcatctccttcctgaagccataatgtttgcgattgttgccacgaaatactagcatttgccctggata |
693 |
Q |
| |
|
||||||||||| |||||||||||||| | ||| ||||| ||||| ||||||||||| | |||| |||||| ||||| |||| || ||||| |||| |
|
|
| T |
17711581 |
cctgacataatcgcatgaaaatattttgtattggcatccccttctcgaagccataataaacgagattattgccaagaaatgctagtgttagccctcgata |
17711482 |
T |
|
| Q |
694 |
aagaatg |
700 |
Q |
| |
|
||||||| |
|
|
| T |
17711481 |
aagaatg |
17711475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 211; Significance: 1e-115; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 10 - 774
Target Start/End: Complemental strand, 19308160 - 19307392
Alignment:
| Q |
10 |
tcatcaaccacctcattagctactaaaataccatcaagtatttgccaattttttacaaacgttgactgagtatctgagattaccgttcccataacctgac |
109 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||||||| ||||| | || ||||||||||||||| || || |||||||||| || |||||| || | | |
|
|
| T |
19308160 |
tcatccaccacctcattagctactagaataccatcaaggatttgtcgatcttttacaaacgttgattgtgtgtctgagattatcgatcccattacattcc |
19308061 |
T |
|
| Q |
110 |
gcaaacggtttgccaacaacttcgccaaa-ttttatataagcatcccaccaaagcaatgggtcaaaaatcattcagctgatgcgg-ttgtcaatcttggg |
207 |
Q |
| |
|
| |||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||| | ||||||||| | | || || ||||||||||| || |
|
|
| T |
19308060 |
gtaaacggtttgccaacaacttggccaaaattttatatagacatcccaccaaagcaatggggcgaaaatcatttggacggtgggggttgtcaatctttgg |
19307961 |
T |
|
| Q |
208 |
aataagagcaatgaaagtgctatttattcctttcgaga--cgaccattgcgatgaaattccaacacaaaccgcataatgtcacctttcaattccggccaa |
305 |
Q |
| |
|
||| |||||||||||||| |||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||| ||||||||||| ||| |||| |
|
|
| T |
19307960 |
aatgagagcaatgaaagtactatttattcctttagagaaacgaccgttgcgatgaaattccaacacaaaccgcataatatcacctttcaaatcctgccag |
19307861 |
T |
|
| Q |
306 |
aagtctttagtaaaacccattggaatgtcatccagacccggactcttatacccatcgcaatcccacactgccaccttaacttcagtctcattaaaatgat |
405 |
Q |
| |
|
||||||||| ||||||||| |||| | || ||||||| ||||| || ||||| |||||||||||||| ||||||||||| | ||| |||| || |
|
|
| T |
19307860 |
aagtctttaataaaacccaaaggaacaccgtctggacccgggctcttgtaaccatcacaatcccacactgctaccttaacttccgcctctgtaaacggac |
19307761 |
T |
|
| Q |
406 |
aaatcaaactatttcctttcaaaacagataatctcccaaaattcatatcatccaccctaggcctattaat-gtcatgcgcctggtaaagattttgaaaat |
504 |
Q |
| |
|
|||| | ||| |||| ||| || ||||| | |||||||||| ||||||||||||||||||| | | || | |||| ||| ||| || |||| |
|
|
| T |
19307760 |
gtatcagagcattaccttccaacacggataaatgacgaaaattcataccatccaccctaggcctattcagaggcaa-cacctgataatgatgctggaaat |
19307662 |
T |
|
| Q |
505 |
gactgaaaactgcttccctgacttcagaaactccctccacaacatttccttcaactaaagtaaaagagagggcattttttcgacgttttcctgacataat |
604 |
Q |
| |
|
|| | | ||||||| |||||||||| || || |||||||||| || ||||||||||||| || | |||| || |||| ||||||| | | |||||||| |
|
|
| T |
19307661 |
gattaagaactgctgccctgacttcggatacaccctccacaatatgtccttcaactaaaatagaggagatggtatttcgtcgacgtctatcagacataat |
19307562 |
T |
|
| Q |
605 |
agcatgaaaatatttagaatttgcatctccttcctgaagccataatgtttgcgattgttgccacgaaatactagcatttgccctggataaagaatgtaaa |
704 |
Q |
| |
|
|||||||||||||||||||| || |||||||| ||||||||| | | |||||||||||||||| |||||||||||| ||||||| |||||||||||| |
|
|
| T |
19307561 |
tgcatgaaaatatttagaattcgcgtctccttctcgaagccatagtaatcgcgattgttgccacgagatactagcatttaccctggacaaagaatgtaaa |
19307462 |
T |
|
| Q |
705 |
tcagctgacatcgcatgtaaatccgccacttcctccacagacagttcgtccacctctcccctagcctcca |
774 |
Q |
| |
|
|| |||||| |||||||||||| || |||||| | |||| |||| |||||| |||||| |||||| |
|
|
| T |
19307461 |
tccattgacatatcatgtaaatccgtcaaatcctcctcggacaagtcgttcacctcacccctatcctcca |
19307392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 121 - 243
Target Start/End: Original strand, 17998452 - 17998576
Alignment:
| Q |
121 |
gccaacaacttcgccaaa-ttttatataagcatcccaccaaagcaatgggtcaaaaatcattcagctgatg-cggttgtcaatcttgggaataagagcaa |
218 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||| |||||| | ||||| |||| |||||||||||| | || ||||||||||||| |||||||| ||| |
|
|
| T |
17998452 |
gccaacaacttcgccaaaattttataaaagcaacccaccgaggcaataggtcgaaaatcattcagacgttgagggttgtcaatcttaggaataagggcat |
17998551 |
T |
|
| Q |
219 |
tgaaagtgctatttattcctttcga |
243 |
Q |
| |
|
||||||||||||||||| ||||||| |
|
|
| T |
17998552 |
tgaaagtgctatttatttctttcga |
17998576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 184
Target Start/End: Original strand, 14539158 - 14539222
Alignment:
| Q |
121 |
gccaacaacttcgccaaa-ttttatataagcatcccaccaaagcaatgggtcaaaaatcattcag |
184 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||| |||||||| ||||| |||| |||||||||||| |
|
|
| T |
14539158 |
gccaacaacttcgccaaaattttatacaagcaacccaccaaggcaataggtctaaaatcattcag |
14539222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 195 - 240
Target Start/End: Complemental strand, 20508357 - 20508312
Alignment:
| Q |
195 |
tgtcaatcttgggaataagagcaatgaaagtgctatttattccttt |
240 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
20508357 |
tgtcaatcttaggaataagagcaatgaacgtgctatttatcccttt |
20508312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 240
Target Start/End: Complemental strand, 40433166 - 40433132
Alignment:
| Q |
206 |
ggaataagagcaatgaaagtgctatttattccttt |
240 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |
|
|
| T |
40433166 |
ggaataagagcaatgaaagtactatttattccttt |
40433132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 594 - 671
Target Start/End: Original strand, 17998932 - 17999009
Alignment:
| Q |
594 |
cctgacataatagcatgaaaatatttagaatttgcatctccttcctgaagccataatgtttgcgattgttgccacgaa |
671 |
Q |
| |
|
|||||||| ||||||||||||||||| || || | ||||| ||| ||||||||||| | |||||||||||||||| |
|
|
| T |
17998932 |
cctgacatgatagcatgaaaatatttggagttggtgtctccctcccgaagccataatagtctcgattgttgccacgaa |
17999009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 136 - 240
Target Start/End: Complemental strand, 14606859 - 14606754
Alignment:
| Q |
136 |
aaattttatataagcatcccaccaaagcaatgggtcaaaaatcattcagctgatg-cggttgtcaatcttgggaataagagcaatgaaagtgctatttat |
234 |
Q |
| |
|
|||||||||| ||||| ||||| | ||||||||||| |||||||||||| || || |||| |||||| | ||||| |||||||||||||| ||||| || |
|
|
| T |
14606859 |
aaattttatacaagcaccccactagagcaatgggtcgaaaatcattcaggtgttgagggttatcaatcataggaatcagagcaatgaaagtactattgat |
14606760 |
T |
|
| Q |
235 |
tccttt |
240 |
Q |
| |
|
|||||| |
|
|
| T |
14606759 |
tccttt |
14606754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 594 - 650
Target Start/End: Complemental strand, 14606398 - 14606342
Alignment:
| Q |
594 |
cctgacataatagcatgaaaatatttagaatttgcatctccttcctgaagccataat |
650 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||||| | ||| ||||||||||| |
|
|
| T |
14606398 |
cctgacatgatagcatgaaagtatttagaatttgcatcccattcgcgaagccataat |
14606342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 597 - 700
Target Start/End: Original strand, 32644029 - 32644132
Alignment:
| Q |
597 |
gacataatagcatgaaaatatttagaatttgcatctccttcctgaagccataatgtttgcgattgttgccacgaaatactagcatttgccctggataaag |
696 |
Q |
| |
|
|||||||| |||||||||||||| ||||| ||||| ||||| |||||||||||| | ||||||||||| ||||| || ||||| ||||| || |||| |
|
|
| T |
32644029 |
gacataatcgcatgaaaatattttgaattggcatccccttcacgaagccataatgaccgagattgttgccaagaaatgctcgcattagccctcgaaaaag |
32644128 |
T |
|
| Q |
697 |
aatg |
700 |
Q |
| |
|
|||| |
|
|
| T |
32644129 |
aatg |
32644132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 597 - 700
Target Start/End: Complemental strand, 36190781 - 36190678
Alignment:
| Q |
597 |
gacataatagcatgaaaatatttagaatttgcatctccttcctgaagccataatgtttgcgattgttgccacgaaatactagcatttgccctggataaag |
696 |
Q |
| |
|
|||||||| |||||||||||||| | ||| ||||| ||||| ||||||||||| | ||||||||||| ||||| ||||| || ||||| ||||||| |
|
|
| T |
36190781 |
gacataatcgcatgaaaatattttgtattggcatccccttctcgaagccataataaacgagattgttgccaagaaatgctagcgttagccctcgataaag |
36190682 |
T |
|
| Q |
697 |
aatg |
700 |
Q |
| |
|
|||| |
|
|
| T |
36190681 |
aatg |
36190678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 594 - 646
Target Start/End: Original strand, 48436118 - 48436170
Alignment:
| Q |
594 |
cctgacataatagcatgaaaatatttagaatttgcatctccttcctgaagcca |
646 |
Q |
| |
|
|||||||||||||||||| ||||||| | ||||||||| |||||| ||||||| |
|
|
| T |
48436118 |
cctgacataatagcatgataatatttgggatttgcatccccttcccgaagcca |
48436170 |
T |
|
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Target: scaffold1350 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: scaffold1350
Description:
Target: scaffold1350; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 70
Target Start/End: Original strand, 1113 - 1173
Alignment:
| Q |
10 |
tcatcaaccacctcattagctactaaaataccatcaagtatttgccaattttttacaaacg |
70 |
Q |
| |
|
||||| ||||||||||| |||| |||||||||||||| ||||||| |||||| ||||||| |
|
|
| T |
1113 |
tcatccaccacctcattggctatcaaaataccatcaagaatttgcctatttttaacaaacg |
1173 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000006; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 70
Target Start/End: Complemental strand, 25856012 - 25855952
Alignment:
| Q |
10 |
tcatcaaccacctcattagctactaaaataccatcaagtatttgccaattttttacaaacg |
70 |
Q |
| |
|
|||||||||||||||||||||| | ||| |||||||| ||||||| |||||| ||||||| |
|
|
| T |
25856012 |
tcatcaaccacctcattagctatcagaatgccatcaagaatttgcctatttttaacaaacg |
25855952 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 70
Target Start/End: Complemental strand, 33384779 - 33384719
Alignment:
| Q |
10 |
tcatcaaccacctcattagctactaaaataccatcaagtatttgccaattttttacaaacg |
70 |
Q |
| |
|
|||||||||||||||||||||| | ||| |||||||| ||||||| |||||| ||||||| |
|
|
| T |
33384779 |
tcatcaaccacctcattagctatcagaattccatcaagaatttgcctatttttaacaaacg |
33384719 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 240
Target Start/End: Original strand, 12833655 - 12833700
Alignment:
| Q |
195 |
tgtcaatcttgggaataagagcaatgaaagtgctatttattccttt |
240 |
Q |
| |
|
|||||| ||| ||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
12833655 |
tgtcaaccttaggaataagagcaatgaacgtgctatttatcccttt |
12833700 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 240
Target Start/End: Original strand, 12865633 - 12865678
Alignment:
| Q |
195 |
tgtcaatcttgggaataagagcaatgaaagtgctatttattccttt |
240 |
Q |
| |
|
|||||| ||| ||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
12865633 |
tgtcaaccttaggaataagagcaatgaacgtgctatttatcccttt |
12865678 |
T |
|
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