View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17324_low_13 (Length: 275)
Name: NF17324_low_13
Description: NF17324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17324_low_13 |
 | |
|
| [»] scaffold0525 (1 HSPs) |
| | |
|
| [»] scaffold0001 (1 HSPs) |
| | |
|
| [»] scaffold1412 (2 HSPs) |
| | |
|
| [»] scaffold0263 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 20 - 270
Target Start/End: Complemental strand, 24039254 - 24039001
Alignment:
| Q |
20 |
acgcttaaccaccatctggtagaagccaatcatcaacaaagccttaaaaggcacaacgcttaaccatcaagagttctcaataactcaagacagaagcaca |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24039254 |
acgcttaaccaccatctggtagaagccaatcatcaacaaagccttaaaaggcacaacgcttaaccatcaagagttctcaataactcaagacagaagcaca |
24039155 |
T |
|
| Q |
120 |
acaagaagaa---aacgacgcttaaccatccttggacagaagcacaacgacgcttaaccatttatgacagaagcttatcaacatagcttaaccgtcatga |
216 |
Q |
| |
|
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
24039154 |
agaagaagaagaaaacgacgcttaaccatccttggacagaagcacaacgacgcttaaccatttatgacagaagcttatcaacatagcttaaccatcatga |
24039055 |
T |
|
| Q |
217 |
acagaagcacaagacaagaagagtaaggatatccaaaatcaatgatgatgtcca |
270 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
24039054 |
acagaagcacaagacaagaagagtaaggatatccaaaatcaatgatgatatcca |
24039001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 20 - 270
Target Start/End: Original strand, 31269804 - 31270057
Alignment:
| Q |
20 |
acgcttaaccaccatctggtagaagccaatcatcaacaaagccttaaaaggcacaacgcttaaccatcaagagttctcaataactcaagacagaagcaca |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31269804 |
acgcttaaccaccatctggtagaagccaatcatcaacaaagccttaaaaggcacaacgcttaaccatcaagagttctcaataactcaagacagaagcaca |
31269903 |
T |
|
| Q |
120 |
acaaga---agaaaacgacgcttaaccatccttggacagaagcacaacgacgcttaaccatttatgacagaagcttatcaacatagcttaaccgtcatga |
216 |
Q |
| |
|
| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
31269904 |
aaaagaagaagaaaacgacgcttaaccatccttggacagaagcacaacgacgcttaaccattaatgacaaaagcttatcaacatagcttaaccatcatga |
31270003 |
T |
|
| Q |
217 |
acagaagcacaagacaagaagagtaaggatatccaaaatcaatgatgatgtcca |
270 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
31270004 |
acagaagcacaagacaagaagagtaaggatatccaaaatcaatgatgatatcca |
31270057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 36316585 - 36316655
Alignment:
| Q |
20 |
acgcttaaccaccatctggtagaagccaatcatcaacaaagccttaaaaggcacaacgcttaaccatcaag |
90 |
Q |
| |
|
|||||||||||||||||||||||||| || | |||||||||| ||||||||||||||||||| |||| |
|
|
| T |
36316585 |
acgcttaaccaccatctggtagaagcaaacaaccaacaaagccaattaaggcacaacgcttaaccaccaag |
36316655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 20 - 270
Target Start/End: Complemental strand, 41832401 - 41832148
Alignment:
| Q |
20 |
acgcttaaccaccatctggtagaagccaatcatcaacaaagccttaaaaggcacaacgcttaaccatcaagagttctcaataactcaagacagaagcaca |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
41832401 |
acgcttaaccaccatctggtagaagccaatcatcaacaaagccttaaaaggcacaacgcttaaccatcaagagttctcaataactcaagacaggagcaca |
41832302 |
T |
|
| Q |
120 |
acaagaagaa---aacgacgcttaaccatccttggacagaagcacaacgacgcttaaccatttatgacagaagcttatcaacatagcttaaccgtcatga |
216 |
Q |
| |
|
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
41832301 |
agaagaagaagaaaacgacgcttaaccatccttggacagaagcacaacgacgcttaaccatttatgacagaagcttatcaacatagcttaaccatcatga |
41832202 |
T |
|
| Q |
217 |
acagaagcacaagacaagaagagtaaggatatccaaaatcaatgatgatgtcca |
270 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
41832201 |
acagaagcacaagacaagaagagtaaggatatccaaaatcaatgatgatatcca |
41832148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 20 - 270
Target Start/End: Complemental strand, 34512617 - 34512364
Alignment:
| Q |
20 |
acgcttaaccaccatctggtagaagccaatcatcaacaaagccttaaaaggcacaacgcttaaccatcaagagttctcaataactcaagacagaagcaca |
119 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||| ||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
34512617 |
acgcttaaccaccatccggtagaagccaatattca-caaagccataaaaggcataacgcttaaccatcaagagttttcaataactcaagacagaagcaca |
34512519 |
T |
|
| Q |
120 |
acaagaagaa-------aacgacgcttaaccatccttggacagaagcacaacgacgcttaaccatttatgacagaagcttatcaacatagcttaaccgtc |
212 |
Q |
| |
|
| |||||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||| || |
|
|
| T |
34512518 |
agaagaagaagaagaaaaacgacgcttaaccatccttggacagaagcacaacg---cttaaccattcatgacagaagcttattaacatagcttaaccatc |
34512422 |
T |
|
| Q |
213 |
atgaacagaagcacaagacaagaagagtaaggatatccaaaatcaatgatgatgtcca |
270 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||||||||||||||||||||| |||| |
|
|
| T |
34512421 |
atgaacagaagcacaagacaagaaaaacaaggatatccaaaatcaatgatgatatcca |
34512364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 120
Target Start/End: Complemental strand, 7737076 - 7736977
Alignment:
| Q |
20 |
acgcttaaccaccatctggtagaagccaatcatcaacaaagccttaaaaggcacaacgcttaaccatcaagagttctcaataactcaagacagaagcaca |
119 |
Q |
| |
|
||||||||| ||||| | |||||||||| |||| |||||||| | |||||||||| ||||||||||||||||| ||||| |||||||| ||||||||| |
|
|
| T |
7737076 |
acgcttaactgccatccgatagaagccaa-catccacaaagccattgaaggcacaacacttaaccatcaagagttttcaatcactcaagatagaagcaca |
7736978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 206 - 270
Target Start/End: Complemental strand, 7734919 - 7734856
Alignment:
| Q |
206 |
aaccgtcatgaacagaagcacaagacaagaagagtaaggatatccaaaatcaatgatgatgtcca |
270 |
Q |
| |
|
|||| |||||||||||||||||||||||||| | || |||||||||||||||||||||| |||| |
|
|
| T |
7734919 |
aaccatcatgaacagaagcacaagacaagaa-aacaatgatatccaaaatcaatgatgatatcca |
7734856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 20 - 270
Target Start/End: Original strand, 9906160 - 9906413
Alignment:
| Q |
20 |
acgcttaaccaccatctggtagaagccaatcatcaacaaagccttaaaaggcacaacgcttaaccatcaagagttctcaataactcaagacagaagcaca |
119 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
9906160 |
acgcttaaccaccatccggtagaagccaatcaacaacaaagccttaaaaggcacaacgcttaaccatcaagagttctcaataactcaagacaggagcaca |
9906259 |
T |
|
| Q |
120 |
acaaga---agaaaacgacgcttaaccatccttggacagaagcacaacgacgcttaaccatttatgacagaagcttatcaacatagcttaaccgtcatga |
216 |
Q |
| |
|
| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
9906260 |
agaagaagaagaaaacgacgcttaaccatccttggacagaagcacaacgacgcttaaccatttatgacagaagcttatcaacatagcttaaccatcatga |
9906359 |
T |
|
| Q |
217 |
acagaagcacaagacaagaagagtaaggatatccaaaatcaatgatgatgtcca |
270 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
9906360 |
acagaagcacaagacaagaagagtaaggatatccaaaatcaatgatgatatcca |
9906413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 151 - 270
Target Start/End: Original strand, 18703500 - 18703619
Alignment:
| Q |
151 |
gacagaagcacaacgacgcttaaccatttatgacagaagcttatcaacatagcttaaccgtcatgaacagaagcacaagacaagaagagtaaggatatcc |
250 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
18703500 |
gacagaagcacaacgacgcttaaccattcatgacagaagcttatcaacatagcttaaccatcatgaacagaaacacaagacaagaagagtaaagatatcc |
18703599 |
T |
|
| Q |
251 |
aaaatcaatgatgatgtcca |
270 |
Q |
| |
|
||||||||||||||| |||| |
|
|
| T |
18703600 |
aaaatcaatgatgatatcca |
18703619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 18703412 - 18703513
Alignment:
| Q |
20 |
acgcttaaccaccatctggtagaagccaatcatcaacaaagccttaaaaggcacaacgcttaaccatcaagagttctcaataactcaagacagaagcaca |
119 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18703412 |
acgcttaaccaccatccggtagaagccaatcatcaacagagccttaaaaggcacaacgcttaaccatcaagagttctcaataactcaagacagaagcaca |
18703511 |
T |
|
| Q |
120 |
ac |
121 |
Q |
| |
|
|| |
|
|
| T |
18703512 |
ac |
18703513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 128 - 237
Target Start/End: Original strand, 35267955 - 35268063
Alignment:
| Q |
128 |
aaaacgacgcttaaccatccttggacagaagcacaacgacgcttaaccatttatgacagaagcttatcaacatagcttaaccgtcatgaacagaagcaca |
227 |
Q |
| |
|
||||||||| ||||||||| ||||| ||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
35267955 |
aaaacgacgattaaccatc-ttggatagaagcacaacaacgcttaaccattcatgacagaagcttatcaacatggcttaaccatcatgaacagaagcaca |
35268053 |
T |
|
| Q |
228 |
agacaagaag |
237 |
Q |
| |
|
| |||||||| |
|
|
| T |
35268054 |
acacaagaag |
35268063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 20 - 270
Target Start/End: Original strand, 7275487 - 7275740
Alignment:
| Q |
20 |
acgcttaaccaccatctggtagaagccaatcatcaacaaagccttaaaaggcacaacgcttaaccatcaagagttctcaataactcaagacagaagcaca |
119 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7275487 |
acgcttaaccaccatccggtagaagccaatcatcaacaaagccttaaaaggcacaatgcttaaccatcaagagttctcaataactcaagacagaagcaca |
7275586 |
T |
|
| Q |
120 |
acaagaagaa---aacgacgcttaaccatccttggacagaagcacaacgacgcttaaccatttatgacagaagcttatcaacatagcttaaccgtcatga |
216 |
Q |
| |
|
| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |
|
|
| T |
7275587 |
agaagaagaagaaaatgacgcttaaccatccttggacagaagcacaacgacgcttaaccattcatgacagaagcttatcaacatagcttaaccatcatga |
7275686 |
T |
|
| Q |
217 |
acagaagcacaagacaagaagagtaaggatatccaaaatcaatgatgatgtcca |
270 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
7275687 |
acagaagcacaagacaagaagagtaaggatatctaaaatcaatgatgatctcca |
7275740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 20 - 270
Target Start/End: Complemental strand, 26175212 - 26174961
Alignment:
| Q |
20 |
acgcttaaccaccatctggtagaagccaatcatcaacaaagccttaaaaggcacaacgcttaaccatcaagagttctcaataactcaagacagaagcaca |
119 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
26175212 |
acgcttaaccaccatccggtagaagc-aatcatcaacaaagccaattaaggcaccacgcttaaccatcaagagttttcaataactcaagacagaagcaca |
26175114 |
T |
|
| Q |
120 |
acaagaaga----aaacgacgcttaaccatccttggacagaagcacaacgacgcttaaccatttatgacagaagcttatcaacatagcttaaccgtcatg |
215 |
Q |
| |
|
| ||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||| ||| | || ||||| |
|
|
| T |
26175113 |
agaagaagaagagaaacgacacttaaccatccttggacagaagcaca---acgcttaaccattcatgacgaaagcttatcaacatggctgatccatcatg |
26175017 |
T |
|
| Q |
216 |
aacagaagcacaagacaag-aagagtaaggatatccaaaatcaatgatgatgtcca |
270 |
Q |
| |
|
||||||||||||| ||||| || | ||||||||||||||||||||||||| |||| |
|
|
| T |
26175016 |
aacagaagcacaaaacaagaaaaaacaaggatatccaaaatcaatgatgatatcca |
26174961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 20 - 270
Target Start/End: Complemental strand, 21256416 - 21256162
Alignment:
| Q |
20 |
acgcttaaccaccatctggtagaagccaatcatcaacaaagccttaaaa-ggcacaacgcttaaccatcaagagttctcaataactcaagacagaagcac |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
21256416 |
acgcttaaccaccatctggtagaagccaatcatcaacaaagccttaaaaaggcacaacgcttaaccatcaagagttctcaataactaaagacaaaagcac |
21256317 |
T |
|
| Q |
119 |
aacaagaagaa---aacgacgcttaaccatccttggacagaagcacaacgacgcttaaccatttatgacagaagcttatcaacatagcttaaccgtcatg |
215 |
Q |
| |
|
|| |||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
21256316 |
aagaagaagaagaaaacgatgcttaaacatccttggacagaagcacaacgacgcttaaccatttatgacagaagcttatcaacatagcttaaccatcatg |
21256217 |
T |
|
| Q |
216 |
aacagaagcacaagacaagaagagtaaggatatccaaaatcaatgatgatgtcca |
270 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
21256216 |
aacagaagcacaagacaagaagagtaaggatatccaaaatcaatgatgatatcca |
21256162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 20 - 270
Target Start/End: Original strand, 35304959 - 35305212
Alignment:
| Q |
20 |
acgcttaaccaccatctggtagaagccaatcatcaacaaagccttaaaaggcacaacgcttaaccatcaagagttctcaataactcaagacagaagcaca |
119 |
Q |
| |
|
|||||||||||||||| ||||||||| || || | |||||||| |||||||||||||||||||||||||||||| ||||| |||||||| ||||||||| |
|
|
| T |
35304959 |
acgcttaaccaccatccggtagaagcaaa-caaccacaaagccataaaaggcacaacgcttaaccatcaagagtagtcaattactcaagatagaagcaca |
35305057 |
T |
|
| Q |
120 |
acaagaagaa----aacgacgcttaaccatccttggacagaagcacaacgacgcttaaccatttatgacagaagcttatcaacatagcttaaccgtcatg |
215 |
Q |
| |
|
| ||||| || ||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||| ||||| ||||||||| ||||||| ||||| |
|
|
| T |
35305058 |
agaagaaaaagaaaaacgacgcttaaccatccttggacagaagcacaacaacgcttaactattcatgacggaagcatatcaacatgtcttaaccatcatg |
35305157 |
T |
|
| Q |
216 |
aacagaagcacaagacaagaagagtaaggatatccaaaatcaatgatgatgtcca |
270 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
35305158 |
aacagaagcacaagacaagaaatacaaggatatccaaaatcaatgatgatatcca |
35305212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 23 - 177
Target Start/End: Original strand, 41949711 - 41949870
Alignment:
| Q |
23 |
cttaaccaccatctggtagaagccaatcatcaacaaagccttaaaaggcacaacgcttaaccatcaagagttctcaataactcaagacagaagcac---- |
118 |
Q |
| |
|
||||||||||||| |||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41949711 |
cttaaccaccatccggtagaagccaa-catcgacaaagccataaaaggcacaacgcttaaccatcaagagttctcaataactcaagacagaagcacaaga |
41949809 |
T |
|
| Q |
119 |
--aacaagaagaaaacgacgcttaaccatccttggacagaagcacaacgacgcttaaccat |
177 |
Q |
| |
|
|| |||||||||||||||| |||||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
41949810 |
agaagaagaagaaaacgacgcctaaccatccttggacaaaagcacaacaacgcttaaccat |
41949870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 134 - 190
Target Start/End: Original strand, 41949893 - 41949949
Alignment:
| Q |
134 |
acgcttaaccatccttggacagaagcacaacgacgcttaaccatttatgacagaagc |
190 |
Q |
| |
|
|||||||||||||| |||| ||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
41949893 |
acgcttaaccatccgtggatagaagcacaacaacgcttaaccatccatgacagaagc |
41949949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0525 (Bit Score: 183; Significance: 5e-99; HSPs: 1)
Name: scaffold0525
Description:
Target: scaffold0525; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 45 - 270
Target Start/End: Original strand, 6290 - 6518
Alignment:
| Q |
45 |
ccaatcatcaacaaagccttaaaaggcacaacgcttaaccatcaagagttctcaataactcaagacagaagcacaacaaga---agaaaacgacgcttaa |
141 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||| |||||| | |
|
|
| T |
6290 |
ccaatcatcaacaaagccttaaaaggcacaacgcttaaccatcaagagttctcaataactcaagacagaagtacaagaagaagaagaaaacaacgcttga |
6389 |
T |
|
| Q |
142 |
ccatccttggacagaagcacaacgacgcttaaccatttatgacagaagcttatcaacatagcttaaccgtcatgaacagaagcacaagacaagaagagta |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
6390 |
ccatccttggacagaagcacaacgacgcttaaccattcatgacaaaagcttatcaacatagcttaaccatcatgaacagaagcacaagacaagaagagta |
6489 |
T |
|
| Q |
242 |
aggatatccaaaatcaatgatgatgtcca |
270 |
Q |
| |
|
|||||||||||||||||||||||| |||| |
|
|
| T |
6490 |
aggatatccaaaatcaatgatgatatcca |
6518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 20 - 270
Target Start/End: Original strand, 144988 - 145236
Alignment:
| Q |
20 |
acgcttaaccaccatctggtagaagccaatcatcaacaaagccttaaaaggcacaacgcttaaccatcaagagttctcaataactcaagacagaagcaca |
119 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||| | | |
|
|
| T |
144988 |
acgcttaaccaccatccggtagaagccaat-atccacaaagccataaaaggcacaacgcttaaccatcaagagttttccataactcaagacagaagaaga |
145086 |
T |
|
| Q |
120 |
acaagaagaaaa--cgacgcttaaccatccttggacagaagcacaacgacgcttaaccatttatgacagaagcttatcaacatagcttaaccgtcatgaa |
217 |
Q |
| |
|
| |||||||||| |||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
145087 |
agaagaagaaaaaacgacgcttaaccatccttggacagaagcacaatg---cttaaccattcatgacagaagcttatcaacatagcttaaccatcatgaa |
145183 |
T |
|
| Q |
218 |
cagaagcacaagacaagaagagtaaggatatccaaaatcaatgatgatgtcca |
270 |
Q |
| |
|
||||||||||||||||||| | |||||||||||| | |||||||||| |||| |
|
|
| T |
145184 |
cagaagcacaagacaagaaaaacaaggatatccaacaacaatgatgatatcca |
145236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 97; Significance: 1e-47; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 20 - 233
Target Start/End: Complemental strand, 10745390 - 10745186
Alignment:
| Q |
20 |
acgcttaaccaccatctggtagaagccaatcatcaacaaagccttaaaaggcacaacgcttaaccatcaagagttctcaataactcaagacagaagcaca |
119 |
Q |
| |
|
|||||||||||||||||||||||||| || || |||||||| | |||||| ||||| |||||| ||||||| |||||||| |||||||||||||||||| |
|
|
| T |
10745390 |
acgcttaaccaccatctggtagaagc-aagcaccaacaaagtcataaaagacacaaaccttaactatcaagaattctcaatcactcaagacagaagcaca |
10745292 |
T |
|
| Q |
120 |
acaagaagaaaacgacgcttaaccatccttggacagaagcacaacgacgcttaaccatttatgacagaagcttatcaacatagcttaaccgtcatgaaca |
219 |
Q |
| |
|
| || ||||||||||| ||||||||| ||||||||||| || |||||||||| ||||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
10745291 |
ataa--------cgacgcttaacaatccttggatagaagcacaacaacacttaaccattcatgacagaagcttatcaacatggcttaaccatcatgaaca |
10745200 |
T |
|
| Q |
220 |
gaagcacaagacaa |
233 |
Q |
| |
|
||| ||||| |||| |
|
|
| T |
10745199 |
gaatcacaatacaa |
10745186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 128 - 270
Target Start/End: Original strand, 42657257 - 42657395
Alignment:
| Q |
128 |
aaaacgacgcttaaccatccttggacagaagcacaacgacgcttaaccatttatgacagaagcttatcaacatagcttaaccgtcatgaacagaagcaca |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||| ||||||||||||| ||| |
|
|
| T |
42657257 |
aaaacgacgcttaaccatccttggacagaagcacaacg---cttaaccattcatgacagaagcctatcaacatagcttaaccatcatgaacagaagtaca |
42657353 |
T |
|
| Q |
228 |
agacaagaagagtaaggatatccaaaatcaatgatgatgtcca |
270 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||||| |||| |
|
|
| T |
42657354 |
agacaagaa-aacaaggatatccaaaatcaatgatgatatcca |
42657395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 20 - 129
Target Start/End: Original strand, 42656486 - 42656594
Alignment:
| Q |
20 |
acgcttaaccaccatctggtagaagccaatcatcaacaaagccttaaaaggcacaacgcttaaccatcaagagttctcaataactcaagacagaagcaca |
119 |
Q |
| |
|
|||||||||||||||| |||||||||||| || | |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42656486 |
acgcttaaccaccatccggtagaagccaa-caaccacaaagccataaaaggcacaacacttaaccatcaagagttctcaataactcaagacagaagcaca |
42656584 |
T |
|
| Q |
120 |
acaagaagaa |
129 |
Q |
| |
|
| |||||||| |
|
|
| T |
42656585 |
agaagaagaa |
42656594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 20 - 177
Target Start/End: Complemental strand, 4607232 - 4607071
Alignment:
| Q |
20 |
acgcttaaccaccatctggtagaagccaatcatcaacaaagccttaaaaggcacaacgcttaaccatcaagagttctcaataactcaagacagaagcac- |
118 |
Q |
| |
|
|||||||| ||||||| |||||||||||| |||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
4607232 |
acgcttaaacaccatccggtagaagccaa-catcgacaaagccaattagggcacaacgcttaaccatcaagagttctcaataactcaagacagaaacaca |
4607134 |
T |
|
| Q |
119 |
-----aacaagaagaaaacgacgcttaaccatccttggacagaagcacaacgacgcttaaccat |
177 |
Q |
| |
|
|| |||||||||| ||||||||||||||| | ||||||||||| || | |||||||||| |
|
|
| T |
4607133 |
agaagaagaagaagaaaatgacgcttaaccatccat-gacagaagcaccacaaagcttaaccat |
4607071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 134 - 190
Target Start/End: Complemental strand, 4607048 - 4606992
Alignment:
| Q |
134 |
acgcttaaccatccttggacagaagcacaacgacgcttaaccatttatgacagaagc |
190 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||||||||||| |||| |||||| |
|
|
| T |
4607048 |
acgcttaaccatccttggccagaagcacaacaacgcttaaccatccatgatagaagc |
4606992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1412 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: scaffold1412
Description:
Target: scaffold1412; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 128 - 270
Target Start/End: Original strand, 238 - 377
Alignment:
| Q |
128 |
aaaacgacgcttaaccatccttggacagaagcacaacgacgcttaaccatttatgacagaagcttatcaacatagcttaaccgtcatgaacagaagcaca |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
238 |
aaaacgacgcttaaccatccttggacagaagcacaatg---cttaaccattcatgacagaagcttatcaacatagcttaaccatcatgaacagaagcaca |
334 |
T |
|
| Q |
228 |
agacaagaagagtaaggatatccaaaatcaatgatgatgtcca |
270 |
Q |
| |
|
||||||||| | |||||||||||| | |||||||||| |||| |
|
|
| T |
335 |
agacaagaaaaacaaggatatccaacaacaatgatgatatcca |
377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1412; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 20 - 129
Target Start/End: Original strand, 90 - 198
Alignment:
| Q |
20 |
acgcttaaccaccatctggtagaagccaatcatcaacaaagccttaaaaggcacaacgcttaaccatcaagagttctcaataactcaagacagaagcaca |
119 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
90 |
acgcttaaccaccatccggtagaagccaat-atccacaaagccataaaaggcacaacgcttaaccatcaagagttttccataactcaagacagaagcaca |
188 |
T |
|
| Q |
120 |
acaagaagaa |
129 |
Q |
| |
|
| |||||||| |
|
|
| T |
189 |
agaagaagaa |
198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 128 - 265
Target Start/End: Original strand, 6823510 - 6823644
Alignment:
| Q |
128 |
aaaacgacgcttaaccatccttggacagaagcacaacgacgcttaaccatttatgacagaagcttatcaacatagcttaaccgtcatgaacagaagcaca |
227 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
6823510 |
aaaacgacgcttaacaatccttggacagaagcacaacg---cttaaccattcatgccagaagcttatcaacatagcttaaccatcatgaacagaagcaca |
6823606 |
T |
|
| Q |
228 |
agacaagaagagtaaggatatccaaaatcaatgatgat |
265 |
Q |
| |
|
||||||||| | |||||||||||| | |||||||||| |
|
|
| T |
6823607 |
agacaagaaaaacaaggatatccaacaacaatgatgat |
6823644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 20 - 129
Target Start/End: Original strand, 6823362 - 6823470
Alignment:
| Q |
20 |
acgcttaaccaccatctggtagaagccaatcatcaacaaagccttaaaaggcacaacgcttaaccatcaagagttctcaataactcaagacagaagcaca |
119 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
6823362 |
acgcttaaccaccatccggtagaagccaat-atccacaaagccataaaaggcacaacgcttaaccatcaagagttttccataactcaagacagaagcaca |
6823460 |
T |
|
| Q |
120 |
acaagaagaa |
129 |
Q |
| |
|
| |||||||| |
|
|
| T |
6823461 |
agaagaagaa |
6823470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 20 - 233
Target Start/End: Complemental strand, 11814912 - 11814703
Alignment:
| Q |
20 |
acgcttaaccaccatctggtagaagccaatcatcaacaaagccttaaaaggcacaacgcttaaccatcaagagttctcaataactcaagacaga-agcac |
118 |
Q |
| |
|
||||||||||||||| |||||||||| || || |||||||| |||||| |||||||||||||||||||||||||| ||| |||||||| ||| || || |
|
|
| T |
11814912 |
acgcttaaccaccatatggtagaagc-aagcaagcacaaagccataaaagacacaacgcttaaccatcaagagttct-aatgactcaaga-agacagaac |
11814816 |
T |
|
| Q |
119 |
aacaagaagaaaacgacgcttaaccatccttggacagaagcacaacgacgcttaaccatttatgacagaagcttatcaacatagcttaaccgtcatgaac |
218 |
Q |
| |
|
|||| || |||||||||||||||||| ||||||||||||||||| |||| ||||||| ||||| |||| ||||||||| |||||||| |||||||| |
|
|
| T |
11814815 |
cacaaaaa--aaacgacgcttaaccatctttggacagaagcacaacaacgccaaaccattcatgacgaaagcctatcaacatggcttaaccatcatgaac |
11814718 |
T |
|
| Q |
219 |
agaagcacaagacaa |
233 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
11814717 |
agaagcacaagacaa |
11814703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 20 - 120
Target Start/End: Complemental strand, 5444487 - 5444388
Alignment:
| Q |
20 |
acgcttaaccaccatctggtagaagccaatcatcaacaaagccttaaaaggcacaacgcttaaccatcaagagttctcaataactcaagacagaagcaca |
119 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||| ||||||||| |
|
|
| T |
5444487 |
acgcttaaccaccatccggtagaagccaa-catcaacaaagccataaaaggcacaacgcttaaccatcaagagtgttcaatcactcaagatagaagcaca |
5444389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 154 - 270
Target Start/End: Complemental strand, 5444397 - 5444282
Alignment:
| Q |
154 |
agaagcacaacgacgcttaaccatttatgacagaagcttatcaacatagcttaaccgtcatgaacagaagcacaagacaagaagagtaaggatatccaaa |
253 |
Q |
| |
|
|||||||||| ||||||||||||| ||||| ||||| ||||||||| ||| | || ||||||||||||||| |||||||||| | ||||||||||||| |
|
|
| T |
5444397 |
agaagcacaataacgcttaaccattcatgacggaagcgtatcaacatggctgatccatcatgaacagaagcagaagacaagaa-aacaaggatatccaaa |
5444299 |
T |
|
| Q |
254 |
atcaatgatgatgtcca |
270 |
Q |
| |
|
|||||||||||| |||| |
|
|
| T |
5444298 |
atcaatgatgatatcca |
5444282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 151 - 236
Target Start/End: Original strand, 55850254 - 55850339
Alignment:
| Q |
151 |
gacagaagcacaacgacgcttaaccatttatgacagaagcttatcaacatagcttaaccgtcatgaacagaagcacaagacaagaa |
236 |
Q |
| |
|
||||||||| |||| ||||||||||||| |||| ||||| ||||||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
55850254 |
gacagaagctcaacaacgcttaaccattcatgatggaagcatatcaacatgtcttaaccatcatgaacagaagcacaagacaagaa |
55850339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0263 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0263
Description:
Target: scaffold0263; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 20 - 129
Target Start/End: Complemental strand, 22693 - 22585
Alignment:
| Q |
20 |
acgcttaaccaccatctggtagaagccaatcatcaacaaagccttaaaaggcacaacgcttaaccatcaagagttctcaataactcaagacagaagcaca |
119 |
Q |
| |
|
|||||||||||||||| ||| |||||||| |||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22693 |
acgcttaaccaccatccggtggaagccaa-catcgacaaagccataaaagacacaacgcttaaccatcaagagttctcaataactcaagacagaagcaca |
22595 |
T |
|
| Q |
120 |
acaagaagaa |
129 |
Q |
| |
|
| |||||||| |
|
|
| T |
22594 |
agaagaagaa |
22585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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