View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17324_low_14 (Length: 247)
Name: NF17324_low_14
Description: NF17324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17324_low_14 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 9 - 247
Target Start/End: Complemental strand, 10256237 - 10255999
Alignment:
| Q |
9 |
cagagacaagagaactatgtcttcatccctacgacaccgacaacttggtgatgtcactctctttcacaaacaatccatgaaaaccataaggcaccctcct |
108 |
Q |
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| T |
10256237 |
cagagacaaaagaactatgtcttcatccctacgacaccgacaacttggtgatgtcactctctttcacaaacaatccatgaaaaccataaggcaccctcct |
10256138 |
T |
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| Q |
109 |
tggcaacttcacttccgccacaatctcaaactccggcgacttagcatccatcaccaaaaacttagactctcccttcttctcatcatgaacataactcact |
208 |
Q |
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| T |
10256137 |
tggcaacttcacttccgccacaatctcaaactccggcgacttagcatccatcaccaaaaacttagactctccctttttctcatcatgcacataactcact |
10256038 |
T |
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| Q |
209 |
aaataaccatcatcctcttcatcaccatcctccctcgcc |
247 |
Q |
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|||||||||||||||||||| |||||||||||||||||| |
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| T |
10256037 |
aaataaccatcatcctcttcttcaccatcctccctcgcc |
10255999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 44 - 243
Target Start/End: Original strand, 10238406 - 10238605
Alignment:
| Q |
44 |
accgacaacttggtgatgtcactctctttcacaaacaatccatgaaaaccataaggcaccctccttggcaacttcacttccgccacaatctcaaactccg |
143 |
Q |
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| T |
10238406 |
accgacaacctcgtgatgtcactctctttcacaaacaatccatgaaaaccataaggcaccctccttggcaacttcacttccgccacaatctcaaactccg |
10238505 |
T |
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| Q |
144 |
gcgacttagcatccatcaccaaaaacttagactctcccttcttctcatcatgaacataactcactaaataaccatcatcctcttcatcaccatcctccct |
243 |
Q |
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| T |
10238506 |
gagacttagcatccatcaccaaaaaccttgactctcccttcttctcatcatgcacataactcactaaataaccatcatcctcttcctcaccatcttccct |
10238605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 34 - 235
Target Start/End: Original strand, 10229616 - 10229817
Alignment:
| Q |
34 |
tccctacgacaccgacaacttggtgatgtcactctctttcacaaacaatccatgaaaaccataaggcaccctccttggcaacttcacttccgccacaatc |
133 |
Q |
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|||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||| |
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| T |
10229616 |
tccctacgacaccgacaacttggttatgtcactttgcttcacaaacaatccatgaaaaccatagggcaccctcctcggcaacttcacctccgccacaatc |
10229715 |
T |
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| Q |
134 |
tcaaactccggcgacttagcatccatcaccaaaaacttagactctcccttcttctcatcatgaacataactcactaaataaccatcatcctcttcatcac |
233 |
Q |
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|||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
10229716 |
tcaaactctggcgacttcgcatccatcaccaaaaacttagattctcccttcttctcatcatgcacataactcactaaataaccatcatcctcttcctcac |
10229815 |
T |
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| Q |
234 |
ca |
235 |
Q |
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|| |
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| T |
10229816 |
ca |
10229817 |
T |
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