View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17324_low_17 (Length: 241)
Name: NF17324_low_17
Description: NF17324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17324_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 164; Significance: 9e-88; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 15 - 225
Target Start/End: Complemental strand, 13635387 - 13635178
Alignment:
| Q |
15 |
tatgcaacttctaaaaacatatgcagcgaaagagtttaccatgaactgtctcacgaattagcttcacgacgtgacctatggtgctaaaatctccannnnn |
114 |
Q |
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| T |
13635387 |
tatgcaacttctaaaaacatatgcagcaaaagagtttaccatgaactgtctcacgaattagcttcacgacgtgaccc--ggtgctaaaatctccattttt |
13635290 |
T |
|
| Q |
115 |
nn-aatattaatgaaaccttcatgtttgccttgtgccctattttcttgttaatttagccaaaaaatttgttctacaaaatatacaaatatacaaatgcat |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13635289 |
tttaatattaatgaaaccttcatgtttgccttgtgccctattttcttgttaatttagccaaaaaatttgttctacaaaatatacaaatatacaaatgcat |
13635190 |
T |
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| Q |
214 |
ccttcaactcac |
225 |
Q |
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|||||||||||| |
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| T |
13635189 |
ccttcaactcac |
13635178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 15 - 225
Target Start/End: Complemental strand, 13735800 - 13735591
Alignment:
| Q |
15 |
tatgcaacttctaaaaacatatgcagcgaaagagtttaccatgaactgtctcacgaattagcttcacgacgtgacctatggtgctaaaatctccannnnn |
114 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
13735800 |
tatgcaacttctaaaaacatatgcagcaaaagagtttaccatgaactgtctcacgaattagcttcacgacgtgaccc--ggtgctaaaatctccattttt |
13735703 |
T |
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| Q |
115 |
nn-aatattaatgaaaccttcatgtttgccttgtgccctattttcttgttaatttagccaaaaaatttgttctacaaaatatacaaatatacaaatgcat |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13735702 |
tttaatattaatgaaaccttcatgtttgccttgtgccctattttcttgttaatttagccaaaaaatttgttctacaaaatatacaaatatacaaatgcat |
13735603 |
T |
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| Q |
214 |
ccttcaactcac |
225 |
Q |
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|||||||||||| |
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| T |
13735602 |
ccttcaactcac |
13735591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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