View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17324_low_3 (Length: 611)
Name: NF17324_low_3
Description: NF17324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17324_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 177 - 602
Target Start/End: Complemental strand, 31092528 - 31092102
Alignment:
| Q |
177 |
aaaaaagatttttg-gtctcggtttagctggtgttaagatgaactctacaatgtgccacacattttgggaaacttgaaagnnnnnnnntataataaagct |
275 |
Q |
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| T |
31092528 |
aaaaaagatttttttgtctcggcttagctggtgttaagatgaactctacaatgtgccacacattttgggaaacttgaaagaaaaaaaatataataaagct |
31092429 |
T |
|
| Q |
276 |
aacaacaatcttgtataaatattgtaccagaaaa-cctgaaccataaattttagctctcactaaaaagtgtaataccaattaacaaaactgaatcataga |
374 |
Q |
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| T |
31092428 |
aacaacaatcttgtataaatattgtaccagaaaaacccgaaccataaattttagctctcactaaaaagtgtaataccaattaacaaaactgaatcataga |
31092329 |
T |
|
| Q |
375 |
agtaaatattcatttacatgtcacatttacattgtctttgtagaatcctgaaactgaataaaataccatttgtaaataattctcttgtctaactaatgcc |
474 |
Q |
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| T |
31092328 |
agtaaatattcatttacatgtcacatttacattgtctttgtagaatcctgaaactgaataaaataccatttgtaaataattctcttgcctaactaatgcc |
31092229 |
T |
|
| Q |
475 |
actagacagtgatttcatttgttttacaaaccagtttttgaaaaatcaattgaagaaaatatgcttgctagnnnnnnnnncctaattgattggtatattt |
574 |
Q |
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| T |
31092228 |
actagacagtgatttcatttgttttacaaaccagtttttgaaaaatcaattgaagaaaatatgcttgctag-aaaaaaaacctaattgattggtatattt |
31092130 |
T |
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| Q |
575 |
tagaggtgtttagaaataaaatgatgat |
602 |
Q |
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| T |
31092129 |
tagaggtgtttagaaataaaatgatgat |
31092102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 19 - 167
Target Start/End: Complemental strand, 31092704 - 31092556
Alignment:
| Q |
19 |
tttaatggtatcatggttgtgatttacacatgtttgcctttcttttatgtctttcccacttcacttctccttgatttcattgagtatttttgtatacttt |
118 |
Q |
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| T |
31092704 |
tttaatggtatcatggttgtgatttacacatgtttgcgtttcttttatgtctttcccacttaacttctccttgatttcattgagtatttttgtatacttt |
31092605 |
T |
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| Q |
119 |
atggttatcataaataaattctggtgatgaatttccagtactgaaggtg |
167 |
Q |
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| T |
31092604 |
atggttatcataaataaattctggggatgaatttccagtactgaaggtg |
31092556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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