View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17324_low_5 (Length: 493)
Name: NF17324_low_5
Description: NF17324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17324_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 425; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 10 - 478
Target Start/End: Original strand, 22278120 - 22278588
Alignment:
| Q |
10 |
gacatcatcacgaatcctcacgatatctttccaccaactcgaccctcccagactcccctccttcacccacccactttatacttcgtacctcgccacagac |
109 |
Q |
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| T |
22278120 |
gacatcatcacgaatcctcacgatatccttccaccaactcgaccctcccagacccccctccttcacccacccactttatacttcgtacctcgccacagac |
22278219 |
T |
|
| Q |
110 |
gtacaatacaacaatcaccctgatccaccaacatcattttcccaacagtgcaacattaaactcacttaaccacctcacccccatacctccttcctcctta |
209 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22278220 |
gtacaatacaacaatccccctgatccaccaacatcattttcccaacagtgcaacattaaactcacttaaccacctcacccccatacctccttcctcctta |
22278319 |
T |
|
| Q |
210 |
ctcaaacaaacataatctgaataaacccagaaagtttacctatattcctcacccccaccccaaaaaagacaacataaaatagaattgatagcggaaatga |
309 |
Q |
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||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
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| T |
22278320 |
ctcaaacaaacataatctgaataaacctagaaaatttacctatattcctcacccccaccccaaaaaagacaacataaaatagaatcgatagaggaaatga |
22278419 |
T |
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| Q |
310 |
tacctgaagaggctttgaagaagtaaatagcataaacatgaagagatgatggtacatacttcaacgcacaatttcatctttaatttctagccaaaagtct |
409 |
Q |
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||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
22278420 |
tacctgaagaggctttgaagaagtagatagcataaacatgaaaagatgatggtacatacttcaacgcacaatttcatcttttatttctagccaaaagtct |
22278519 |
T |
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| Q |
410 |
ttgaaaaaactaaaatttataccatccagaccagaactcttaaaacagtcccagatctccactttaact |
478 |
Q |
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| T |
22278520 |
ttgaaaaaactaaaatttataccatccggaccagaactcttaaaacagtcccagatctccactttaact |
22278588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 132 - 208
Target Start/End: Original strand, 7287299 - 7287375
Alignment:
| Q |
132 |
atccaccaacatcattttcccaacagtgcaacattaaactcacttaaccacctcacccccatacctccttcctcctt |
208 |
Q |
| |
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|||| |||||| |||||||| || | || || |||||| |||| ||||| || |||||||| ||||||||||||||| |
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| T |
7287299 |
atccgccaacaccattttcctaataatgaaatattaaattcacataaccgccgcacccccaaacctccttcctcctt |
7287375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 132 - 208
Target Start/End: Original strand, 7287967 - 7288043
Alignment:
| Q |
132 |
atccaccaacatcattttcccaacagtgcaacattaaactcacttaaccacctcacccccatacctccttcctcctt |
208 |
Q |
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| T |
7287967 |
atccgccaacaccattttcctaataatgaaatattaaattcacataaccgccgcacccccaaacctccttcctcctt |
7288043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 355
Target Start/End: Complemental strand, 21089945 - 21089887
Alignment:
| Q |
297 |
atagcggaaatgatacctgaagaggctttgaagaagtaaatagcataaacatgaagaga |
355 |
Q |
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| T |
21089945 |
atagaggaaatgatacctgaagggaatttgaagaaggaaatagcataaataggaagaga |
21089887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 349
Target Start/End: Original strand, 17829460 - 17829525
Alignment:
| Q |
284 |
taaaatagaattgatagcggaaatgatacctgaagaggctttgaagaagtaaatagcataaacatg |
349 |
Q |
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| T |
17829460 |
taaaaaagaatcgatagaggagatgatacctgagggagctttgaagaagaaaatagcataatcatg |
17829525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 303 - 355
Target Start/End: Original strand, 380706 - 380758
Alignment:
| Q |
303 |
gaaatgatacctgaagaggctttgaagaagtaaatagcataaacatgaagaga |
355 |
Q |
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|||||||||||||| || |||||||||||| ||| |||||| ||||| ||||| |
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| T |
380706 |
gaaatgatacctgatgaagctttgaagaaggaaagagcatagacatgcagaga |
380758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 332
Target Start/End: Complemental strand, 41352634 - 41352565
Alignment:
| Q |
263 |
cccaccccaaaaaagacaacataaaatagaattgatagcggaaatgatacctgaagaggctttgaagaag |
332 |
Q |
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| T |
41352634 |
cccaccctaaaagaaacgacataaaatagaatcaatagaggaaatgatatctgacggggctttgaagaag |
41352565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 204
Target Start/End: Complemental strand, 51072196 - 51072127
Alignment:
| Q |
135 |
caccaacatcattttcccaacagtgcaacattaaactcacttaaccacctcacccccatacctccttcct |
204 |
Q |
| |
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|||||||| ||||| || ||||| |||||||||||||| || | || ||| ||||||| ||||||||||| |
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| T |
51072196 |
caccaacaccatttccctaacagagcaacattaaactccctcatcctcctgacccccaaacctccttcct |
51072127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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