View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17325_high_2 (Length: 527)
Name: NF17325_high_2
Description: NF17325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17325_high_2 |
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| [»] scaffold0197 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: scaffold0197 (Bit Score: 445; Significance: 0; HSPs: 1)
Name: scaffold0197
Description:
Target: scaffold0197; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 18 - 527
Target Start/End: Complemental strand, 22996 - 22489
Alignment:
| Q |
18 |
gtgttttctttcttgattgcttgtagggaaaggcttgttttagctggtgtttgtaattcaccaagtgggtctagtttcaatttgtgggaggttgatgaaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22996 |
gtgttttctttcttgattgcttgtagggaaaggcttgttttagctggtgtttgtaattcaccaagtgggtctagtttcaatttgtgggaggttgatgaaa |
22897 |
T |
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| Q |
118 |
aaagtatggagatttgtgagattggtgttatgcctcatgatttgctttctagtttgtttgatggtgatgaggatgatagatttgctagcttgaagtgtgt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22896 |
aaagtatggagatttgtgagattggtgttatgcctcatgatttgctttctagtttgtttgatggtgatgaggatgatagatttgctagcttgaagtgtgt |
22797 |
T |
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| Q |
218 |
tgggttgggtgatcttatatatgttttcaatgaggattatcataggatgtacccggcttgtgtctgtgagattcgcagtcacggtggtggtgagaatggt |
317 |
Q |
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| T |
22796 |
tgggttgggtgatcttatatatgttttcaatgaggattatcataggatgtacccggcttgtgtctgtgagattcgcagtcgcggtggtggtgagaatagt |
22697 |
T |
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| Q |
318 |
aattgtatttggaggagagtgcctcaattgccatcactgatgaataggtttcacaaagttgttagcttttgttcaactgtttcactgcatagtattcttg |
417 |
Q |
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|| ||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
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| T |
22696 |
aagtgttattggaggagggtgcctcagttgccatcactgatgaataggtttcacaaagttgttagcttttgttcaacagtttcactagatagtattcttg |
22597 |
T |
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| Q |
418 |
gtgaaggtcaaaaccatggacttcattgagatcgatctc-gcggatgtttctcgactactaggtatccactcaacactgaatttggttgtgttctgtttt |
516 |
Q |
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| T |
22596 |
gtgaaggtc---accatggacttcattgagatcgatctctgcggatgtttctcgactactaggtatccactcaacgctgaatttggttgtgttctgtttt |
22500 |
T |
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| Q |
517 |
gaatgtgattg |
527 |
Q |
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| T |
22499 |
gaatgtgattg |
22489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 445; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 18 - 527
Target Start/End: Complemental strand, 21309381 - 21308874
Alignment:
| Q |
18 |
gtgttttctttcttgattgcttgtagggaaaggcttgttttagctggtgtttgtaattcaccaagtgggtctagtttcaatttgtgggaggttgatgaaa |
117 |
Q |
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| T |
21309381 |
gtgttttctttcttgattgcttgtagggaaaggcttgttttagctggtgtttgtaattcaccaagtgggtctagtttcaatttgtgggaggttgatgaaa |
21309282 |
T |
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| Q |
118 |
aaagtatggagatttgtgagattggtgttatgcctcatgatttgctttctagtttgtttgatggtgatgaggatgatagatttgctagcttgaagtgtgt |
217 |
Q |
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| T |
21309281 |
aaagtatggagatttgtgagattggtgttatgcctcatgatttgctttctagtttgtttgatggtgatgaggatgatagatttgctagcttgaagtgtgt |
21309182 |
T |
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| Q |
218 |
tgggttgggtgatcttatatatgttttcaatgaggattatcataggatgtacccggcttgtgtctgtgagattcgcagtcacggtggtggtgagaatggt |
317 |
Q |
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| T |
21309181 |
tgggttgggtgatcttatatatgttttcaatgaggattatcataggatgtacccggcttgtgtctgtgagattcgcagtcgcggtggtggtgagaatagt |
21309082 |
T |
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| Q |
318 |
aattgtatttggaggagagtgcctcaattgccatcactgatgaataggtttcacaaagttgttagcttttgttcaactgtttcactgcatagtattcttg |
417 |
Q |
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| T |
21309081 |
aagtgttattggaggagggtgcctcagttgccatcactgatgaataggtttcacaaagttgttagcttttgttcaacagtttcactagatagtattcttg |
21308982 |
T |
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| Q |
418 |
gtgaaggtcaaaaccatggacttcattgagatcgatctc-gcggatgtttctcgactactaggtatccactcaacactgaatttggttgtgttctgtttt |
516 |
Q |
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| T |
21308981 |
gtgaaggtc---accatggacttcattgagatcgatctctgcggatgtttctcgactactaggtatccactcaacgctgaatttggttgtgttctgtttt |
21308885 |
T |
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| Q |
517 |
gaatgtgattg |
527 |
Q |
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| T |
21308884 |
gaatgtgattg |
21308874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 475 - 525
Target Start/End: Original strand, 36069992 - 36070042
Alignment:
| Q |
475 |
ctaggtatccactcaacactgaatttggttgtgttctgttttgaatgtgat |
525 |
Q |
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| T |
36069992 |
ctaggcatccactcaacagtgaatttggctgtgttctattttgaatgtgat |
36070042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 344 - 414
Target Start/End: Original strand, 36069911 - 36069982
Alignment:
| Q |
344 |
attgccatcactgatgaataggtttcacaaag-ttgttagcttttgttcaactgtttcactgcatagtattc |
414 |
Q |
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| T |
36069911 |
attgccatcactcatgaataggtttctcaaagttttttagctttccttcaattgtttcattgcataatattc |
36069982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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