View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17325_high_4 (Length: 433)
Name: NF17325_high_4
Description: NF17325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17325_high_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 386; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 10 - 415
Target Start/End: Original strand, 1357824 - 1358229
Alignment:
| Q |
10 |
aagaaaatctcaatgaattagctcttgggattgagaattctaaattacctttcttttgggttttgagagatttgaaaaatggttttgctgagttaccaaa |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
1357824 |
aagaaaatctcaatgaattagctcttgggattgagaattctaaattacctttcttttgggttttgagagatttgaaaaatggttttgttgagttaccaaa |
1357923 |
T |
|
| Q |
110 |
tgggtttgaggataggacaaaagatcatggtatagtgtggaaaagttgggccccacaacctaagatcttaggtcatggttcagttggtggttgtttgact |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1357924 |
tgggtttgaggataggacaaaagatcatggtatagtgtggaaaagttgggccccacaacctaagatcttaggtcatggttcagttggtggttgtttgact |
1358023 |
T |
|
| Q |
210 |
cattgtggttcaggttcaatgatagaaaatctttattttggacatgttcttgttatgttgccttttttattggatcaagctttgtattcaagagtaatgc |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1358024 |
cattgtggttcaggttcaatgatagaaaatctttattttggacatgttcttgttatgttgccttttttattggatcaagctttgtattcaagagtaatgc |
1358123 |
T |
|
| Q |
310 |
aagagaagaaagttggaattgagatagtgaggaatgaggaagatgggtcatttacaaggaattcagttgctaaggcattgagacttactatggttgatga |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
1358124 |
aagagaagaaagttggaattgagatagtgaggaatgaagaagatggatcatttacaaggaattcagttgctaaggcattgagatttaccatggttgatga |
1358223 |
T |
|
| Q |
410 |
agaggg |
415 |
Q |
| |
|
|||||| |
|
|
| T |
1358224 |
agaggg |
1358229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 126 - 303
Target Start/End: Original strand, 20492824 - 20493001
Alignment:
| Q |
126 |
acaaaagatcatggtatagtgtggaaaagttgggccccacaacctaagatcttaggtcatggttcagttggtggttgtttgactcattgtggttcaggtt |
225 |
Q |
| |
|
|||||||| |||| || || ||||||| ||||| ||||| | |||||||||| |||||| ||| ||||||| ||| ||| ||||||||||||||||| |
|
|
| T |
20492824 |
acaaaagaatatggaatcgtttggaaaacatgggcaccacagctaaagatcttagctcatggatcaattggtggatgtatgagtcattgtggttcaggtt |
20492923 |
T |
|
| Q |
226 |
caatgatagaaaatctttattttggacatgttcttgttatgttgccttttttattggatcaagctttgtattcaagag |
303 |
Q |
| |
|
|| | || || || ||| ||||||| ||||| ||||| | ||||||| |||| | |||||| ||||| |||||||| |
|
|
| T |
20492924 |
cagtcattgagaagcttcattttgggcatgtacttgtgacattgccttatttaattgatcaatgtttgttttcaagag |
20493001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 262
Target Start/End: Original strand, 1355197 - 1355289
Alignment:
| Q |
170 |
taagatcttaggtcatggttcagttggtggttgtttgactcattgtggttcaggttcaatgatagaaaatctttattttggacatgttcttgt |
262 |
Q |
| |
|
||||||||||| |||||| || ||||||| ||| ||| |||||||||||| ||||| | || ||||| || ||||||| ||||||||||| |
|
|
| T |
1355197 |
taagatcttagctcatggagcaattggtggatgtatgagtcattgtggttctggttctgttattgaaaaggttcattttggccatgttcttgt |
1355289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 114 - 262
Target Start/End: Original strand, 29954677 - 29954825
Alignment:
| Q |
114 |
tttgaggataggacaaaagatcatggtatagtgtggaaaagttgggccccacaacctaagatcttaggtcatggttcagttggtggttgtttgactcatt |
213 |
Q |
| |
|
|||||||| || |||||||| ||| || || ||||||| ||||| || |||| ||||||||||| |||||| ||| ||||||| ||| ||| ||||| |
|
|
| T |
29954677 |
tttgaggaaagaacaaaagaatgtggaatcgtttggaaaacatgggcacctcaacttaagatcttagctcatggatcaattggtggatgtatgagtcatt |
29954776 |
T |
|
| Q |
214 |
gtggttcaggttcaatgatagaaaatctttattttggacatgttcttgt |
262 |
Q |
| |
|
|||||||||||||| | || || || ||| ||||||| ||||| ||||| |
|
|
| T |
29954777 |
gtggttcaggttcagtcattgagaagcttcattttgggcatgtccttgt |
29954825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 114 - 262
Target Start/End: Original strand, 11531990 - 11532138
Alignment:
| Q |
114 |
tttgaggataggacaaaagatcatggtatagtgtggaaaagttgggccccacaacctaagatcttaggtcatggttcagttggtggttgtttgactcatt |
213 |
Q |
| |
|
|||||||| || |||||||| | ||| || || ||||||| ||||| ||||||| ||||||||||| ||||| ||| | ||||| ||| ||| ||| | |
|
|
| T |
11531990 |
tttgaggaaagaacaaaagaacgtggaattgtttggaaaacatgggcaccacaacttaagatcttagcacatggatcaatcggtggatgtatgagtcact |
11532089 |
T |
|
| Q |
214 |
gtggttcaggttcaatgatagaaaatctttattttggacatgttcttgt |
262 |
Q |
| |
|
|||||||||||||| | || || || ||| ||||||| |||| |||||| |
|
|
| T |
11532090 |
gtggttcaggttcagtcattgagaagcttcattttgggcatgctcttgt |
11532138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 262
Target Start/End: Original strand, 14589156 - 14589248
Alignment:
| Q |
170 |
taagatcttaggtcatggttcagttggtggttgtttgactcattgtggttcaggttcaatgatagaaaatctttattttggacatgttcttgt |
262 |
Q |
| |
|
|||||||||| |||||| ||| ||||||||||| |||||||||||||| || ||||| | | |||| |||||| |||| ||||||||||| |
|
|
| T |
14589156 |
taagatcttaactcatggatcaattggtggttgtatgactcattgtggtccaagttcagtctttgaaatgctttatcttgggcatgttcttgt |
14589248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 303
Target Start/End: Original strand, 12846750 - 12846844
Alignment:
| Q |
209 |
tcattgtggttcaggttcaatgatagaaaatctttattttggacatgttcttgttatgttgccttttttattggatcaagctttgtattcaagag |
303 |
Q |
| |
|
||||||||||||||||||| | || || || || ||||||||||||||||||||| ||||||| ||| | |||||| ||||| |||||||| |
|
|
| T |
12846750 |
tcattgtggttcaggttcagtcattgagaagctccattttggacatgttcttgttacattgccttatttgctagatcaatgtttgttttcaagag |
12846844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University