View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17325_high_8 (Length: 309)
Name: NF17325_high_8
Description: NF17325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17325_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 17 - 296
Target Start/End: Original strand, 19469774 - 19470053
Alignment:
| Q |
17 |
gttcaaccagaagaagctgagggttatgctttgtacaagactatgattttggtcaaggactgctgttttcgcacagtggagtttgagtgataatgaaggg |
116 |
Q |
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| T |
19469774 |
gttcaaccagaagaagctgagggttatgctttgtataagactatgattttggtcaaggactgctgttttcgcacagtggaatttcagtgataatgaaggg |
19469873 |
T |
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| Q |
117 |
ttagtgaagaagatcattagtgctggtgaagaacctggaacttatctagggaatattattagatgttttcacgttaagtaaaacttttaataagtgtgat |
216 |
Q |
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| T |
19469874 |
ttagtgaagaagatcattagtgctgctgaagaacctggaacttatctagagaatattattagatgttttcaggttaagtaaaacttttaacaagtgtgct |
19469973 |
T |
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| Q |
217 |
ttcctcttttaccaagagacaatgaaatttggtggcccatgagttggctcatttggctcttcaggttcctgataggattt |
296 |
Q |
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| T |
19469974 |
ttcctcttttaccaagagacaatgaaatttggtggcccatgagttggctcatttggctcttcaggttcctgataggattt |
19470053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 17 - 206
Target Start/End: Complemental strand, 47865544 - 47865355
Alignment:
| Q |
17 |
gttcaaccagaagaagctgagggttatgctttgtacaagactatgattttggtcaaggactgctgttttcgcacagtggagtttgagtgataatgaaggg |
116 |
Q |
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| T |
47865544 |
gttcaaccagaagaagctgagggttatgctttgtacaagactatgattttggtcaaggactgctgttttcgcacagtggagtttgagtgataatgaaggg |
47865445 |
T |
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| Q |
117 |
ttagtgaagaagatcattagtgctggtgaagaacctggaacttatctagggaatattattagatgttttcacgttaagtaaaacttttaa |
206 |
Q |
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| T |
47865444 |
ttagtgaagaagatcattagtgctggtgaagaacctggaacttatctagggaatattattagatgttttcacgttaagtaaaacttttaa |
47865355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 198 - 296
Target Start/End: Complemental strand, 47864488 - 47864390
Alignment:
| Q |
198 |
aacttttaataagtgtgatttcctcttttaccaagagacaatgaaatttggtggcccatgagttggctcatttggctcttcaggttcctgataggattt |
296 |
Q |
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| T |
47864488 |
aacttttaataagtgtgatttcctcttttaccaagagacaatgaaatttggtggcccatgagttggctcatttggctcttcaggttcctgataggattt |
47864390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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