View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17325_low_1 (Length: 720)

Name: NF17325_low_1
Description: NF17325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17325_low_1
NF17325_low_1
[»] chr3 (5 HSPs)
chr3 (4-554)||(21389152-21389701)
chr3 (187-550)||(11645713-11646074)
chr3 (563-615)||(21387223-21387275)
chr3 (562-600)||(31317374-31317412)
chr3 (566-615)||(52724128-52724177)
[»] chr7 (4 HSPs)
chr7 (79-550)||(14971988-14972444)
chr7 (79-550)||(15401464-15401920)
chr7 (204-296)||(9688249-9688340)
chr7 (468-526)||(9688010-9688068)
[»] chr2 (2 HSPs)
chr2 (206-545)||(19391880-19392214)
chr2 (570-615)||(16533440-16533485)
[»] chr4 (3 HSPs)
chr4 (210-526)||(28801727-28802041)
chr4 (204-296)||(13554626-13554717)
chr4 (468-526)||(13554387-13554445)
[»] chr6 (5 HSPs)
chr6 (197-311)||(24000141-24000254)
chr6 (197-311)||(23998777-23998890)
chr6 (197-311)||(23999459-23999572)
chr6 (197-299)||(23986552-23986653)
chr6 (376-443)||(23986099-23986166)
[»] chr5 (4 HSPs)
chr5 (204-550)||(20065184-20065528)
chr5 (570-615)||(18333610-18333655)
chr5 (562-615)||(24270008-24270061)
chr5 (562-615)||(24346639-24346692)
[»] chr1 (1 HSPs)
chr1 (204-551)||(18578537-18578874)
[»] chr8 (3 HSPs)
chr8 (465-546)||(14757707-14757788)
chr8 (206-348)||(14757464-14757605)
chr8 (560-615)||(5675957-5676012)


Alignment Details
Target: chr3 (Bit Score: 460; Significance: 0; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 4 - 554
Target Start/End: Complemental strand, 21389701 - 21389152
Alignment:
Q  4 cctttgaaaacgtcaaaa-ggatagtaaccaacacaagtaatttaagtaaaataagtggacaattacaagttatagcaacacaagtaacaatcgcaattg 102  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  21389701 cctttgaaaacgtcaaaaaggatagtaaccaacacaagtaatttaagtaaaataagtggacaattacaagttataacaacacaagtaacaatcgcaattg 21389602  T
Q  103 aaaataagtgaacatgcaaatgtaagcacacaagataaggatacgcatgtaagaaacttgaattaatgaaaatagattaaggagaataaataaaaagaag 202  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21389601 aaaacaagtgaacatgcaaatgtaagcacacaagataaggatacgcatgtaagaaacttgaattaatgaaaatagattaaggagaataaataaaaagaag 21389502  T
Q  203 ctcttgcttatttaaagcaagaggtatccaagatatctagtttcctacggatttttgagaaaagacttggatggtagtggttttgtaaaaatgtcagcaa 302  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  21389501 ctcttgcttatttaaagcaagaggtatccaagatacctaatttcctacgga-ttttgagaaaagactcggatggtagtggttttgtaaaaaagtcagcaa 21389403  T
Q  303 gctgattttttgtgtcaacgtactcgaatgttacatccttcttttcaccatgatctctgaggaagtgatgccaaatctcagtatgcttagtctttgaatg 402  Q
    ||||| |||| ||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||    
T  21389402 gctgacttttagtgtcaacgtactcgaacgttacatccttcttttcaacatgatccctgaggaagtgatgtcaaatctcagtatgcttagtctttgaatg 21389303  T
Q  403 taaggctgggtttttggtgagatttatagcactagtgttataacaattagattgaaatgcatcctagttttaaatcatagtcaaggagttgttgtttgat 502  Q
    |||  |||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21389302 taacactggatttttggtgagatttatagcactagcgttataac-attagattgaaatgcatcctagttttaaatcatagtcaaggagttgttgtttgat 21389204  T
Q  503 ccataaaatttgtgagcaacaactcctggctaccacatattcagcctctgcg 554  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  21389203 ccataaaatttgtgagcaacaactcccggctaccacatattcagcctctgcg 21389152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 187 - 550
Target Start/End: Complemental strand, 11646074 - 11645713
Alignment:
Q  187 aataaataaaaagaagctcttgcttatttaaagcaagaggtatccaagatatctagtttcctacggatttttgagaaaagacttggatggtagtggtttt 286  Q
    |||| |||| ||||| ||||||||||||||| ||||||||||||||||||| |||||| |||| |||    ||||||||||||  ||||| || ||||||    
T  11646074 aatatataagaagaaactcttgcttatttaaggcaagaggtatccaagatacctagttccctatgga-ccatgagaaaagactcagatggaagaggtttt 11645976  T
Q  287 gtaaaaatgtcagcaagctgattttttgtgtcaacgtactcgaatgttacatccttcttttcaccatgatctctgaggaagtgatgccaaatctcagtat 386  Q
    |||||||||||| |||| ||| ||||  ||||||| ||| | || |||||||||||||||||| ||||||| ||  |||| ||||||| |||| ||  ||    
T  11645975 gtaaaaatgtcatcaagttgacttttaatgtcaacatacgcaaacgttacatccttcttttcaacatgatccctacggaaatgatgccgaatcacaaaat 11645876  T
Q  387 gcttagtctttgaatgtaaggctgggtttttggtgagatttatagcactagtgttataacaattagattgaaatgcatcctagttttaaatcatagtcaa 486  Q
    | |||||| ||||||||||| ||||||||||||| ||||| ||||||||| |||| | || ||| ||||| ||  || ||||||||||||||||||||||    
T  11645875 gtttagtccttgaatgtaagactgggtttttggtaagattaatagcactaatgttgtcac-atttgattggaacacaacctagttttaaatcatagtcaa 11645777  T
Q  487 ggagttgttgtttgatccataaaatttgtgagcaacaactcctggctaccacatattcagcctc 550  Q
    ||||||||||||| ||| ||||||||||  |||||||||||| | || ||||||||||||||||    
T  11645776 ggagttgttgtttaatctataaaatttgacagcaacaactcccgactgccacatattcagcctc 11645713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 563 - 615
Target Start/End: Complemental strand, 21387275 - 21387223
Alignment:
Q  563 attgagtttggttcgttgacataaatagtgggtggccctatatcgaaaacctg 615  Q
    |||||||||||||||||||||||||||||||||| | | ||| ||||||||||    
T  21387275 attgagtttggttcgttgacataaatagtgggtgactcaatagcgaaaacctg 21387223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 562 - 600
Target Start/End: Complemental strand, 31317412 - 31317374
Alignment:
Q  562 tattgagtttggttcgttgacataaatagtgggtggccc 600  Q
    ||||||||||||||||| ||||||||| |||||||||||    
T  31317412 tattgagtttggttcgtggacataaatggtgggtggccc 31317374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 566 - 615
Target Start/End: Original strand, 52724128 - 52724177
Alignment:
Q  566 gagtttggttcgttgacataaatagtgggtggccctatatcgaaaacctg 615  Q
    ||||||||||| | ||||||||| ||||||||||| ||| ||||||||||    
T  52724128 gagtttggttcatggacataaatggtgggtggcccgatagcgaaaacctg 52724177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 178; Significance: 1e-95; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 79 - 550
Target Start/End: Original strand, 14971988 - 14972444
Alignment:
Q  79 caacacaagtaacaatcgcaattgaaaataagtgaacatgcaaatgtaagcacaca-agataaggatacgcatgtaagaaacttgaattaatgaaaatag 177  Q
    |||||||| | ||||||||||||||||| ||||||||||||||||| |||  || | ||| |||| ||||||||| ||||||||||| || ||||||||     
T  14971988 caacacaatttacaatcgcaattgaaaacaagtgaacatgcaaatgaaagaccaaagagagaaggttacgcatgtgagaaacttgaagtagtgaaaata- 14972086  T
Q  178 attaaggagaataaataaaaagaagctcttgcttatttaaagcaagaggtatccaagatatctagtttcctacggatttttgagaaaagacttggatggt 277  Q
                 ||||| ||||| ||||||||||||||| | ||||||||||||||||| |||||| ||||||||| || |||||||||||||||||||    
T  14972087 -------------aataagaagaaactcttgcttatttaaggaaagaggtatccaagatacctagttccctacggatctt-gagaaaagacttggatggt 14972172  T
Q  278 agtggttttgtaaaaatgtcagcaagctgattttttgtgtcaacgtactcgaatgttacatccttcttttcaccatgatctctgaggaagtgatgccaaa 377  Q
    ||||||||||| ||||| || |||||||||  ||| |||||||| |||||||| |||||||||||||||||| |||| | ||| ||||| ||||| |  |    
T  14972173 agtggttttgtgaaaatatcggcaagctgacctttagtgtcaacatactcgaaagttacatccttcttttcaacatggtttctaaggaaatgatgtcgta 14972272  T
Q  378 tctcagtatgcttagtctttgaatgtaaggctgggtttttggtgagatttatagcactagtgttataacaattagattgaaatgcatcctagttttaaat 477  Q
    ||||| |||  |||||| ||||||||||| || | |||||||||||||| |||||||||||||||| || ||| ||||  ||  || | |||||||||||    
T  14972273 tctcaatatatttagtccttgaatgtaagactagttttttggtgagattaatagcactagtgttatcac-atttgatttgaacacaacttagttttaaat 14972371  T
Q  478 catagtcaaggagttgttgtttgatccataaaatttgtgagcaacaactcctggctaccacatattcagcctc 550  Q
    ||||||||||||| ||||||||||||||||||||||| |||||||| ||||| ||| ||||||||||||||||    
T  14972372 catagtcaaggaggtgttgtttgatccataaaatttgagagcaacagctcctagctgccacatattcagcctc 14972444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 79 - 550
Target Start/End: Original strand, 15401464 - 15401920
Alignment:
Q  79 caacacaagtaacaatcgcaattgaaaataagtgaacatgcaaatgtaagcacaca-agataaggatacgcatgtaagaaacttgaattaatgaaaatag 177  Q
    |||||||| | ||||||||||||||||| ||||||||||||||||| |||  || | ||| |||| ||||||||| ||||||||||| || ||||||||     
T  15401464 caacacaatttacaatcgcaattgaaaacaagtgaacatgcaaatgaaagaccaaagagagaaggttacgcatgtgagaaacttgaagtagtgaaaata- 15401562  T
Q  178 attaaggagaataaataaaaagaagctcttgcttatttaaagcaagaggtatccaagatatctagtttcctacggatttttgagaaaagacttggatggt 277  Q
                 ||||| ||||| ||||||||||||||| | ||||||||||||||||| |||||| ||||||||| || |||||||||||||||||||    
T  15401563 -------------aataagaagaaactcttgcttatttaaggaaagaggtatccaagatacctagttccctacggatctt-gagaaaagacttggatggt 15401648  T
Q  278 agtggttttgtaaaaatgtcagcaagctgattttttgtgtcaacgtactcgaatgttacatccttcttttcaccatgatctctgaggaagtgatgccaaa 377  Q
    ||||||||||| ||||| || |||||||||  ||| |||||||| |||||||| |||||||||||||||||| |||| | ||| ||||| ||||| |  |    
T  15401649 agtggttttgtgaaaatatcggcaagctgacctttagtgtcaacatactcgaaagttacatccttcttttcaacatggtttctaaggaaatgatgtcgta 15401748  T
Q  378 tctcagtatgcttagtctttgaatgtaaggctgggtttttggtgagatttatagcactagtgttataacaattagattgaaatgcatcctagttttaaat 477  Q
    ||||| |||  |||||| ||||||||||| || | |||||||||||||| |||||||||||||||| || ||| ||||  ||  || | |||||||||||    
T  15401749 tctcaatatatttagtccttgaatgtaagactagttttttggtgagattaatagcactagtgttatcac-atttgatttgaacacaacttagttttaaat 15401847  T
Q  478 catagtcaaggagttgttgtttgatccataaaatttgtgagcaacaactcctggctaccacatattcagcctc 550  Q
    ||||||||||||| ||||||||||||||||||||||| |||||||| ||||| ||| ||||||||||||||||    
T  15401848 catagtcaaggaggtgttgtttgatccataaaatttgagagcaacagctcctagctgccacatattcagcctc 15401920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 204 - 296
Target Start/End: Complemental strand, 9688340 - 9688249
Alignment:
Q  204 tcttgcttatttaaagcaagaggtatccaagatatctagtttcctacggatttttgagaaaagacttggatggtagtggttttgtaaaaatgt 296  Q
    |||| |||||||||||||||||||||| | |||| |||  | |||||  | ||||||||||| | | ||||||||||||||||||||||||||    
T  9688340 tctttcttatttaaagcaagaggtatctaggatacctaactccctacata-ttttgagaaaataatcggatggtagtggttttgtaaaaatgt 9688249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 468 - 526
Target Start/End: Complemental strand, 9688068 - 9688010
Alignment:
Q  468 agttttaaatcatagtcaaggagttgttgtttgatccataaaatttgtgagcaacaact 526  Q
    |||||||||||| ||| ||| ||||||||||| |  ||||||||||| |||||||||||    
T  9688068 agttttaaatcaaagttaagtagttgttgttttagtcataaaatttgagagcaacaact 9688010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 101; Significance: 1e-49; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 206 - 545
Target Start/End: Original strand, 19391880 - 19392214
Alignment:
Q  206 ttgcttatttaaagcaagaggtatccaagatatctagtttcctacggatttttgagaaaagacttggatggtagtggttttgtaaaaatgtcagcaagct 305  Q
    ||||||||||||||||||||||||| |||||| |||||  ||||| ||| || ||| ||||| | ||||||||| |||||| |||||||||||||||| |    
T  19391880 ttgcttatttaaagcaagaggtatctaagatacctagtc-cctacagatctt-gaggaaagaatcggatggtagcggttttataaaaatgtcagcaagat 19391977  T
Q  306 gattttttgtgtcaacgtactcgaatgttacatccttcttttcaccatgatctctgaggaagtgatgccaaatctcagtatgcttagtctttgaatgtaa 405  Q
    ||   || |||||||| ||||| ||  ||||||||||||| |||  | |||| || ||||| | ||||| ||||||| | || |||||  ||||||||||    
T  19391978 gacacttagtgtcaacatactcaaaaattacatccttcttatca--acgatccctaaggaaattatgccgaatctcaatgtgtttagttcttgaatgtaa 19392075  T
Q  406 ggctgggtttttggtgagatttatagcactagtgttataacaattagattgaaatgcatcctagttttaaatcatagtcaaggagttgttgtttgatcca 505  Q
      ||||||||||||| ||||| |||| |||||||||||  | |||  |||| ||  || ||||||||||||||||||||||| ||||||||||||| |||    
T  19392076 aactgggtttttggtaagattgatagaactagtgttatcgc-attttattggaacacaacctagttttaaatcatagtcaagtagttgttgtttgagcca 19392174  T
Q  506 taaaatttgtgagcaacaactcctggctaccacatattca 545  Q
    ||||||||||||| ||||||| | |||| | |||||||||    
T  19392175 taaaatttgtgagtaacaactaccggctgctacatattca 19392214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 570 - 615
Target Start/End: Complemental strand, 16533485 - 16533440
Alignment:
Q  570 ttggttcgttgacataaatagtgggtggccctatatcgaaaacctg 615  Q
    ||||||||| ||||||||| ||||||||||| ||| ||||||||||    
T  16533485 ttggttcgtggacataaatggtgggtggcccgatagcgaaaacctg 16533440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 6e-33; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 210 - 526
Target Start/End: Original strand, 28801727 - 28802041
Alignment:
Q  210 ttatttaaagcaagaggtatccaagatatctagtttcctacggatttttgagaaaagacttggatggtagtggttttgtaaaaatgtcagcaagctgatt 309  Q
    |||||||||| |||||||||| | |||| |||||| ||||||||| ||   |||| || | ||||||||| ||||||||| ||||||||||||| |||      
T  28801727 ttatttaaagtaagaggtatctatgatacctagttccctacggatcttac-gaaaggagtcggatggtagaggttttgtagaaatgtcagcaagttgaca 28801825  T
Q  310 ttttgtgtcaacgtactcgaatgttacatccttcttttcaccatgatctctgaggaagtgatgccaaatctcagtatgcttagtctttgaatgtaaggct 409  Q
     || |||||||| |||||||| || || |||||||||||| ||||||| || ||||| ||||    ||| ||| | || |||||  ||||||||||| ||    
T  28801826 cttagtgtcaacatactcgaaagtcacgtccttcttttcaacatgatccctaaggaaatgatattgaatttcaatgtgtttagttcttgaatgtaagtct 28801925  T
Q  410 gggtttttggtgagatttatagcactagtgttataacaattagattgaaatgcatcctagttttaaatcatagtcaaggagttgttgtttgatccataaa 509  Q
    || ||||| |||||||| |||||||||||| | |  || ||| |||| || ||| | |||||||||||| ||||| || |||||||| || | ||||| |    
T  28801926 ggattttttgtgagattgatagcactagtgctttcgcattta-attggaacgcaacttagttttaaatcttagtcgagtagttgttgcttaagccataga 28802024  T
Q  510 atttgtgagcaacaact 526  Q
    ||||||||| |||||||    
T  28802025 atttgtgagaaacaact 28802041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 204 - 296
Target Start/End: Complemental strand, 13554717 - 13554626
Alignment:
Q  204 tcttgcttatttaaagcaagaggtatccaagatatctagtttcctacggatttttgagaaaagacttggatggtagtggttttgtaaaaatgt 296  Q
    |||| |||||||||||||||||||||| | |||| |||  | |||||  | ||||||||||| | | ||||||||||||||||||||||||||    
T  13554717 tctttcttatttaaagcaagaggtatctaggatacctaactccctacata-ttttgagaaaataatcggatggtagtggttttgtaaaaatgt 13554626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 468 - 526
Target Start/End: Complemental strand, 13554445 - 13554387
Alignment:
Q  468 agttttaaatcatagtcaaggagttgttgtttgatccataaaatttgtgagcaacaact 526  Q
    |||||||||||| ||| ||| ||||||||||| |  ||||||||||| |||||||||||    
T  13554445 agttttaaatcaaagttaagtagttgttgttttagtcataaaatttgagagcaacaact 13554387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 9e-32; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 197 - 311
Target Start/End: Complemental strand, 24000254 - 24000141
Alignment:
Q  197 aagaagctcttgcttatttaaagcaagaggtatccaagatatctagtttcctacggatttttgagaaaagacttggatggtagtggttttgtaaaaatgt 296  Q
    ||||||||||||||||||||| ||||||||||||||||||| |||||| ||||| || | ||||||||||||| ||||||||| |||||||||||||| |    
T  24000254 aagaagctcttgcttatttaaggcaagaggtatccaagatacctagttccctacaga-tcttgagaaaagactcggatggtaggggttttgtaaaaatat 24000156  T
Q  297 cagcaagctgatttt 311  Q
    ||||||| |||||||    
T  24000155 cagcaagttgatttt 24000141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 197 - 311
Target Start/End: Complemental strand, 23998890 - 23998777
Alignment:
Q  197 aagaagctcttgcttatttaaagcaagaggtatccaagatatctagtttcctacggatttttgagaaaagacttggatggtagtggttttgtaaaaatgt 296  Q
    ||||||| ||||||||||||| ||||||||||||||||||| |||||| ||||| ||| || ||||||||||| ||||||||| |||||||||||||| |    
T  23998890 aagaagcacttgcttatttaaggcaagaggtatccaagatacctagttccctacagatctt-gagaaaagactcggatggtaggggttttgtaaaaatat 23998792  T
Q  297 cagcaagctgatttt 311  Q
    ||||||| |||||||    
T  23998791 cagcaagttgatttt 23998777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 197 - 311
Target Start/End: Complemental strand, 23999572 - 23999459
Alignment:
Q  197 aagaagctcttgcttatttaaagcaagaggtatccaagatatctagtttcctacggatttttgagaaaagacttggatggtagtggttttgtaaaaatgt 296  Q
    ||||||||||||||||||||| ||||||||||||||||||| |||||| ||||| || | ||||||||||||| |||||||||  ||||||||||||| |    
T  23999572 aagaagctcttgcttatttaaggcaagaggtatccaagatacctagttccctacaga-tcttgagaaaagactcggatggtaggagttttgtaaaaatat 23999474  T
Q  297 cagcaagctgatttt 311  Q
    ||||||| |||||||    
T  23999473 cagcaagttgatttt 23999459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 197 - 299
Target Start/End: Complemental strand, 23986653 - 23986552
Alignment:
Q  197 aagaagctcttgcttatttaaagcaagaggtatccaagatatctagtttcctacggatttttgagaaaagacttggatggtagtggttttgtaaaaatgt 296  Q
    ||||||||||||||||||||| ||||||||||||||||||| |||||| ||||| || | ||||||||||||| ||||||||| |||||||||||||| |    
T  23986653 aagaagctcttgcttatttaaggcaagaggtatccaagatacctagttccctacaga-tcttgagaaaagactcggatggtaggggttttgtaaaaatat 23986555  T
Q  297 cag 299  Q
    |||    
T  23986554 cag 23986552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 376 - 443
Target Start/End: Complemental strand, 23986166 - 23986099
Alignment:
Q  376 aatctcagtatgcttagtctttgaatgtaaggctgggtttttggtgagatttatagcactagtgttat 443  Q
    ||||||| |||| |||||| ||||||||||  | ||||||||||||||||| ||||||||||||||||    
T  23986166 aatctcaatatgtttagtccttgaatgtaaaacagggtttttggtgagattaatagcactagtgttat 23986099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 9e-32; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 204 - 550
Target Start/End: Original strand, 20065184 - 20065528
Alignment:
Q  204 tcttgcttatttaaagcaagaggtatccaagatatctagtttcctacggatttttgagaaaagacttggatggtagtggttttgtaaaaatgtcagcaag 303  Q
    ||||||||||||||||| ||| ||||| ||||||| | ||| |||| | || || ||| ||||| | ||||||||   ||||||||||||||||||||||    
T  20065184 tcttgcttatttaaagctagatgtatctaagatatatggttccctatgaatctt-gaggaaagagtcggatggtatcagttttgtaaaaatgtcagcaag 20065282  T
Q  304 ctgattttttgtgtcaacgtactcgaatgttacatccttcttttcaccatgatctctgaggaagtgatgccaaatctcagtatgcttagtctttgaatgt 403  Q
     |||   ||||||||||| |  || || | |||||||||||||||| ||| ||| || ||||| ||||  | ||||||| |||| |||||  |||||| |    
T  20065283 ttgacactttgtgtcaacatgatcaaaaggtacatccttcttttcaacataatccctaaggaaatgatatcgaatctcaatatgtttagttcttgaatat 20065382  T
Q  404 aaggctgggtttttggtgagatttatagcactagtgttataacaattagattgaaatgcatcctagttttaaatcatagtcaaggagttgttgtttgatc 503  Q
    ||   ||||||||||| ||||||||||||||| || |||| ||| ||| |||| ||  || ||  ||||||||||| |||| || |||||||| || | |    
T  20065383 aaaattgggtttttggcgagatttatagcactggtattattacattta-attggaacacaaccatgttttaaatcacagtcgagcagttgttgcttaagc 20065481  T
Q  504 cataaaatttgtgagcaacaactcctggctaccacatattcagcctc 550  Q
    | |||||||||||||||  |||| | |||  ||||||||||||||||    
T  20065482 cttaaaatttgtgagcatgaacttccggcggccacatattcagcctc 20065528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 570 - 615
Target Start/End: Original strand, 18333610 - 18333655
Alignment:
Q  570 ttggttcgttgacataaatagtgggtggccctatatcgaaaacctg 615  Q
    ||||||||| ||||||||| ||||||||||| ||| ||||||||||    
T  18333610 ttggttcgtggacataaatggtgggtggcccgatagcgaaaacctg 18333655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 562 - 615
Target Start/End: Original strand, 24270008 - 24270061
Alignment:
Q  562 tattgagtttggttcgttgacataaatagtgggtggccctatatcgaaaacctg 615  Q
    ||||||| ||||||||| ||||||||| ||||||||||| ||| || |||||||    
T  24270008 tattgagcttggttcgtggacataaatggtgggtggcccgataacggaaacctg 24270061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 562 - 615
Target Start/End: Original strand, 24346639 - 24346692
Alignment:
Q  562 tattgagtttggttcgttgacataaatagtgggtggccctatatcgaaaacctg 615  Q
    ||||||| ||||||||| ||||||||| ||||||||||| ||| || |||||||    
T  24346639 tattgagcttggttcgtggacataaatggtgggtggcccgataacggaaacctg 24346692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 204 - 551
Target Start/End: Original strand, 18578537 - 18578874
Alignment:
Q  204 tcttgcttatttaaagcaagaggtatccaagatatctagtttcctacggatttttgagaaaagacttggatggtagtggttttgtaaaaatgtcagcaag 303  Q
    |||||||| || |||||||| |||||| ||||||  ||||| |||||  || ||| || ||||| |  |||||||  |||| ||||||| ||||||||||    
T  18578537 tcttgctttttgaaagcaagtggtatctaagatacttagttccctacatatcttt-aggaaagagtcagatggtaaaggttatgtaaaactgtcagcaag 18578635  T
Q  304 ctgattttttgtgtcaacgtactcgaatgttacatccttcttttcaccatgatctctgaggaagtgatgccaaatctcagtatgcttagtctttgaatgt 403  Q
     |||   || |||||||  || || || || || || ||||||||| ||  |||  | ||||| ||||||||||||||| | || |||||  ||||||||    
T  18578636 ttgacacttagtgtcaaaatattcaaaagtcacgtcattcttttcaacaccatccataaggaaatgatgccaaatctcaatgtgtttagttcttgaatgt 18578735  T
Q  404 aaggctgggtttttggtgagatttatagcactagtgttataacaattagattgaaatgcatcctagttttaaatcatagtcaaggagttgttgtttgatc 503  Q
    ||  || ||||||||||||||||||||||||||||||||| ||| ||| |||| ||  || || | ||||||||||||||    ||||      || | |    
T  18578736 aaaactaggtttttggtgagatttatagcactagtgttatcacattta-attggaacacaaccaaattttaaatcatagt---agagt-----cttaagc 18578826  T
Q  504 cataaaatttgtgagcaacaactcctggctaccacatattcagcctct 551  Q
    ||||||||||||||||||||||| || || |||||||||||| |||||    
T  18578827 cataaaatttgtgagcaacaactactagccaccacatattcatcctct 18578874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 465 - 546
Target Start/End: Original strand, 14757707 - 14757788
Alignment:
Q  465 cctagttttaaatcatagtcaaggagttgttgtttgatccataaaatttgtgagcaacaactcctggctaccacatattcag 546  Q
    ||||||||||||| | ||||||| ||||| ||||||||||||||||| || || |||||||| | |||||||||||| ||||    
T  14757707 cctagttttaaattaaagtcaagtagttgatgtttgatccataaaatctgagaacaacaactaccggctaccacatactcag 14757788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 206 - 348
Target Start/End: Original strand, 14757464 - 14757605
Alignment:
Q  206 ttgcttatttaaagcaagaggtatccaagatatctagtttcctacggatttttgagaaaagacttggatggtagtggttttgtaaaaatgtcagcaagct 305  Q
    |||||||||||||||||| |||||||| |||| ||||||  ||||||| |||| |||||||| | |||||| ||||||||  ||||||| |  ||||| |    
T  14757464 ttgcttatttaaagcaagtggtatccatgatacctagttcgctacgga-ttttaagaaaagagtcggatggaagtggtttgctaaaaatatttgcaagtt 14757562  T
Q  306 gattttttgtgtcaacgtactcgaatgttacatccttcttttc 348  Q
    ||  ||| |||||||  ||||| ||  ||||||| ||||||||    
T  14757563 gacatttggtgtcaatatactcaaaaattacatcattcttttc 14757605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 560 - 615
Target Start/End: Original strand, 5675957 - 5676012
Alignment:
Q  560 agtattgagtttggttcgttgacataaatagtgggtggccctatatcgaaaacctg 615  Q
    ||||||| | ||||||||| ||||||||| ||||||| ||| ||||||||||||||    
T  5675957 agtattgggcttggttcgtagacataaatggtgggtgacccaatatcgaaaacctg 5676012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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