View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17325_low_10 (Length: 337)
Name: NF17325_low_10
Description: NF17325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17325_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 312; Significance: 1e-176; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 18 - 329
Target Start/End: Complemental strand, 12631602 - 12631291
Alignment:
| Q |
18 |
gatcatattatggctattttcaactcaagaaagggagcagtttcaagttcaaaagccatagctgatgcagcttcatggtattgtgctattcttcttgcag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12631602 |
gatcatattatggctattttcaactcaagaaagggagcagtttcaagttcaaaagccatagctgatgcagcttcatggtattgtgctattcttcttgcag |
12631503 |
T |
|
| Q |
118 |
aacttatacttctaaccatatttagagacagttatatgattccaaatgatcatgattacaacatcatagaaagcaaccatttcttgttgtccaaaccatg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12631502 |
aacttatacttctaaccatatttagagacagttatatgattccaaatgatcatgattacaacatcatagaaagcaaccatttcttgttgtccaaaccatg |
12631403 |
T |
|
| Q |
218 |
cgacgaaatctatgtggttggtgaaggtgagacacttaacacaattagtgataagtgtaatgatccttttattgttgagaataatcctcatattcatgac |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12631402 |
cgacgaaatctatgtggttggtgaaggtgagacacttaacacaattagtgataagtgtaatgatccttttattgttgagaataatcctcatattcatgac |
12631303 |
T |
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| Q |
318 |
cctgatgatgtc |
329 |
Q |
| |
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|||||||||||| |
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| T |
12631302 |
cctgatgatgtc |
12631291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 35 - 329
Target Start/End: Complemental strand, 12618769 - 12618475
Alignment:
| Q |
35 |
tttcaactcaagaaagggagcagtttcaagttcaaaagccatagctgatgcagcttcatggtattgtgctattcttcttgcagaacttatacttctaacc |
134 |
Q |
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| T |
12618769 |
tttcaactcaagaaagggacgaaaattaagctcaaaagccatagctgatgcaacttcatggtattgttctattgttcttgtagcactcatacttctaacc |
12618670 |
T |
|
| Q |
135 |
atatttagagacagttatatgattccaaatgatcatgattacaacatcatagaaagcaaccatttcttgttgtccaaaccatgcgacgaaatctatgtgg |
234 |
Q |
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|| | |||||| || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
12618669 |
atttatagagatagctatatgattccaaatgatcatgatcacaacatcatagaaagcaaccatttcttgttgtccaaaccatgcgacgaaatctatgtag |
12618570 |
T |
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| Q |
235 |
ttggtgaaggtgagacacttaacacaattagtgataagtgtaatgatccttttattgttgagaataatcctcatattcatgaccctgatgatgtc |
329 |
Q |
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| T |
12618569 |
ttggtgaaggtgagacacttaacacaattagtgataagtgtaatgatccttttattgttgagaacaatcctcatatacatgaccctgatgatgtc |
12618475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 27 - 329
Target Start/End: Complemental strand, 16783687 - 16783385
Alignment:
| Q |
27 |
atggctattttcaactcaagaaagggagcagtttcaagttcaaaagccatagctgatgcagcttcatggtattgtgctattcttcttgcagaacttatac |
126 |
Q |
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||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||| || || || | |
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| T |
16783687 |
atggctactttcaactcaagaaagggagcaattttaagttcaaaagccatagctgaagcagcttcatggtattgtgctatttttcttgtagccctcattc |
16783588 |
T |
|
| Q |
127 |
ttctaaccatatttagagacagttatatgattccaaatgatcatgattacaacatcatagaaagcaaccatttcttgttgtccaaaccatgcgacgaaat |
226 |
Q |
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|||||| |||||||||||| || | ||||||||||||| || ||||| ||||||| ||||| |||||||||||||||| |||||||||||||||||||| |
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| T |
16783587 |
ttctaagcatatttagagatagctctatgattccaaataataatgatcacaacatgatagagagcaaccatttcttgtcttccaaaccatgcgacgaaat |
16783488 |
T |
|
| Q |
227 |
ctatgtggttggtgaaggtgagacacttaacacaattagtgataagtgtaatgatccttttattgttgagaataatcctcatattcatgaccctgatgat |
326 |
Q |
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|||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||| ||||||||| |
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| T |
16783487 |
ctatgtagttggtgaaggtgagacactaaacacaattagtgataagtgtaatgaccctttcattgttgagaataatcctcatatacatgatcctgatgat |
16783388 |
T |
|
| Q |
327 |
gtc |
329 |
Q |
| |
|
||| |
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|
| T |
16783387 |
gtc |
16783385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 16789574 - 16789660
Alignment:
| Q |
18 |
gatcatattatggctattttcaactcaagaaagggagcagtttcaagttcaaaagccatagctgatgcagcttcatggtattgtgct |
104 |
Q |
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|||||||||||||||| ||||||||||| ||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
16789574 |
gatcatattatggctactttcaactcaataaagggaccaatttcaagtttaaaagccatagctgatgcagcttcatggtattgtgct |
16789660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 220 - 329
Target Start/End: Complemental strand, 19024970 - 19024861
Alignment:
| Q |
220 |
acgaaatctatgtggttggtgaaggtgagacacttaacacaattagtgataagtgtaatgatccttttattgttgagaataatcctcatattcatgaccc |
319 |
Q |
| |
|
|||||||||| ||||| |||||||||||| |||| ||||| |||||||||||| | | |||||||||||| |||||||||||||||| || ||||| |
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| T |
19024970 |
acgaaatctacgtggtatgtgaaggtgagatgcttagcacaaatagtgataagtgcgacggcccttttattgttaagaataatcctcatatacacgaccc |
19024871 |
T |
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| Q |
320 |
tgatgatgtc |
329 |
Q |
| |
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|||||||||| |
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| T |
19024870 |
tgatgatgtc |
19024861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 220 - 329
Target Start/End: Original strand, 20729666 - 20729775
Alignment:
| Q |
220 |
acgaaatctatgtggttggtgaaggtgagacacttaacacaattagtgataagtgtaatgatccttttattgttgagaataatcctcatattcatgaccc |
319 |
Q |
| |
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|||||||||| ||||| |||||||||||| |||| ||||| |||||||||||| | | |||||||||||| |||||||||||||||| || ||||| |
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| T |
20729666 |
acgaaatctacgtggtatgtgaaggtgagatgcttagcacaaatagtgataagtgcgacggcccttttattgttaagaataatcctcatatacacgaccc |
20729765 |
T |
|
| Q |
320 |
tgatgatgtc |
329 |
Q |
| |
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|||||||||| |
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| T |
20729766 |
tgatgatgtc |
20729775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 62 - 108
Target Start/End: Complemental strand, 19025077 - 19025031
Alignment:
| Q |
62 |
aagttcaaaagccatagctgatgcagcttcatggtattgtgctattc |
108 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||||||||||||| |
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| T |
19025077 |
aagttcaaaagccatagttggtgcagcttcatggtattgtgctattc |
19025031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 62 - 108
Target Start/End: Original strand, 20729559 - 20729605
Alignment:
| Q |
62 |
aagttcaaaagccatagctgatgcagcttcatggtattgtgctattc |
108 |
Q |
| |
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||||||||||||||||| || |||||||||||||||||||||||||| |
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| T |
20729559 |
aagttcaaaagccatagttggtgcagcttcatggtattgtgctattc |
20729605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 328
Target Start/End: Complemental strand, 42240270 - 42240170
Alignment:
| Q |
228 |
tatgtggttggtgaaggtgagacacttaacacaattagtgataagtgtaatgatccttttattgttgagaataatcctcatattcatgaccctgatgatg |
327 |
Q |
| |
|
||||||||| ||||||| ||||| ||| | ||||| ||||| || ||| |||||| |||||||| || | ||||| |||||||||||||| ||||||| |
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|
| T |
42240270 |
tatgtggttcgtgaaggagagactcttcatacaataagtgaaaaatgtggtgatccatttattgtagaagagaatccacatattcatgacccagatgatg |
42240171 |
T |
|
| Q |
328 |
t |
328 |
Q |
| |
|
| |
|
|
| T |
42240170 |
t |
42240170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 328
Target Start/End: Original strand, 26303227 - 26303309
Alignment:
| Q |
246 |
gagacacttaacacaattagtgataagtgtaatgatccttttattgttgagaataatcctcatattcatgaccctgatgatgt |
328 |
Q |
| |
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||||||||| | ||||| ||||| |||||| |||||||| ||||||||| | ||||| ||||||||||| ||||||||||| |
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| T |
26303227 |
gagacacttcaaacaataagtgaaaagtgtggtgatccttatattgttgaagagaatccacatattcatgatcctgatgatgt |
26303309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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