View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17325_low_16 (Length: 296)

Name: NF17325_low_16
Description: NF17325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17325_low_16
NF17325_low_16
[»] chr6 (8 HSPs)
chr6 (47-283)||(11207412-11207648)
chr6 (47-283)||(11168668-11168908)
chr6 (61-140)||(2627704-2627783)
chr6 (61-140)||(22978377-22978456)
chr6 (61-140)||(23809947-23810026)
chr6 (55-120)||(8746751-8746816)
chr6 (66-141)||(34218722-34218797)
chr6 (54-107)||(1363154-1363207)
[»] chr1 (2 HSPs)
chr1 (47-283)||(13624071-13624303)
chr1 (47-257)||(52037441-52037652)
[»] chr5 (2 HSPs)
chr5 (54-257)||(1685106-1685311)
chr5 (158-257)||(39954566-39954665)
[»] chr3 (3 HSPs)
chr3 (66-257)||(41053588-41053776)
chr3 (66-122)||(42614306-42614362)
chr3 (66-107)||(9878399-9878440)
[»] chr2 (4 HSPs)
chr2 (66-257)||(44800441-44800627)
chr2 (66-141)||(45003731-45003806)
chr2 (66-117)||(25123500-25123551)
chr2 (54-107)||(15084357-15084410)
[»] chr7 (6 HSPs)
chr7 (158-257)||(37477961-37478060)
chr7 (47-117)||(25731051-25731121)
chr7 (54-111)||(33097893-33097950)
chr7 (54-107)||(21895079-21895132)
chr7 (69-110)||(25350167-25350208)
chr7 (69-110)||(25355861-25355902)
[»] chr4 (4 HSPs)
chr4 (47-141)||(1694788-1694882)
chr4 (66-141)||(5482931-5483006)
chr4 (57-111)||(1967484-1967538)
chr4 (54-130)||(36678788-36678862)
[»] chr8 (3 HSPs)
chr8 (66-141)||(2680305-2680380)
chr8 (55-120)||(24847957-24848022)
chr8 (55-118)||(28940772-28940835)


Alignment Details
Target: chr6 (Bit Score: 160; Significance: 3e-85; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 47 - 283
Target Start/End: Complemental strand, 11207648 - 11207412
Alignment:
Q  47 aaaatttctctaaaagagggatgttcaaattacggaacattcttattcttcgtaattttgagaacgaaggtcgcgtccttcgcacgggttgaatacnnnn 146  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||        
T  11207648 aaaatttctctaaaagagggatgttcaaattacggaacattcttattcttcgtaattttgagaacgaaggtcgcgtccttcgcacgaattgaatactgtt 11207549  T
Q  147 nnnnnnnnnnnaatccttactacatgtttaaataagtcaaatgaaactgatttcttaagataaaatccaagtgtactaagccaatcccaaaatgttaccg 246  Q
               ||||||||||| |||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  11207548 ttttcttttttaatccttactatatgtttgaataagttaaatgaaactgatttcttaagataaactccaagtgtactaagccaatcccaaaatgttaccg 11207449  T
Q  247 cattaaataagaaacacagccaaatagtgcacatatt 283  Q
    || ||||||| ||||||||||||||||||||||||||    
T  11207448 cactaaataaaaaacacagccaaatagtgcacatatt 11207412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 47 - 283
Target Start/End: Complemental strand, 11168908 - 11168668
Alignment:
Q  47 aaaatttctctaaaagagggatgttcaaattacggaacattcttattcttcgtaattttgagaacgaaggtcgcgtccttcgcacgggttgaatacnnnn 146  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||        
T  11168908 aaaatttctctaaaagagggatgttcaaattacggaacattcttattcttcgtaattttgagaacgaaggtcgcgttcttcgcacgggttgaatactgtt 11168809  T
Q  147 nnnnnnnnnnn----aatccttactacatgtttaaataagtcaaatgaaactgatttcttaagataaaatccaagtgtactaagccaatcccaaaatgtt 242  Q
                   |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  11168808 tttatttttatttttaatccttactacatgtttgaataagtcaaatgaaactgatttcttaagataaaatccaagtgtcctaagccaatcccaaaatgtt 11168709  T
Q  243 accgcattaaataagaaacacagccaaatagtgcacatatt 283  Q
    |||||| || |||||||||||||||||||||||||||||||    
T  11168708 accgcactagataagaaacacagccaaatagtgcacatatt 11168668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 61 - 140
Target Start/End: Original strand, 2627704 - 2627783
Alignment:
Q  61 agagggatgttcaaattacggaacattcttattcttcgtaattttgagaacgaaggtcgcgtccttcgcacgggttgaat 140  Q
    |||| ||||||||||||||  ||||||  |||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  2627704 agagagatgttcaaattacataacattgctattcttcgtaaatttgagaacgaaggtcgcgtgcttcgcacgggttgaat 2627783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 61 - 140
Target Start/End: Original strand, 22978377 - 22978456
Alignment:
Q  61 agagggatgttcaaattacggaacattcttattcttcgtaattttgagaacgaaggtcgcgtccttcgcacgggttgaat 140  Q
    |||| ||||||||||||||  |||||| || |||||||||| ||||||||||||||||| || |||||||||||||||||    
T  22978377 agagagatgttcaaattacataacattgttgttcttcgtaaatttgagaacgaaggtcgtgtgcttcgcacgggttgaat 22978456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 61 - 140
Target Start/End: Complemental strand, 23810026 - 23809947
Alignment:
Q  61 agagggatgttcaaattacggaacattcttattcttcgtaattttgagaacgaaggtcgcgtccttcgcacgggttgaat 140  Q
    |||| ||||||||||||||  |||||| || |||||||||| ||||||||||||||||| || |||||||||||||||||    
T  23810026 agagagatgttcaaattacataacattgttgttcttcgtaaatttgagaacgaaggtcgtgtgcttcgcacgggttgaat 23809947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 55 - 120
Target Start/End: Original strand, 8746751 - 8746816
Alignment:
Q  55 tctaaaagagggatgttcaaattacggaacattcttattcttcgtaattttgagaacgaaggtcgc 120  Q
    |||||| ||||||||||||||||| |||||||| | ||||||||||| ||||||||| ||||||||    
T  8746751 tctaaaggagggatgttcaaattatggaacattgtcattcttcgtaaatttgagaacaaaggtcgc 8746816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 66 - 141
Target Start/End: Complemental strand, 34218797 - 34218722
Alignment:
Q  66 gatgttcaaattacggaacattcttattcttcgtaattttgagaacgaaggtcgcgtccttcgcacgggttgaata 141  Q
    |||||||||||||||||| ||| | ||||||| ||| || || |||||||||||| | |||||||| |||||||||    
T  34218797 gatgttcaaattacggaatattgtaattcttcataaattcgaaaacgaaggtcgcatgcttcgcacaggttgaata 34218722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 1363207 - 1363154
Alignment:
Q  54 ctctaaaagagggatgttcaaattacggaacattcttattcttcgtaattttga 107  Q
    ||||||| |||  ||||||||||||||||||||| ||||||||||||| |||||    
T  1363207 ctctaaaggagatatgttcaaattacggaacattgttattcttcgtaaatttga 1363154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 151; Significance: 6e-80; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 47 - 283
Target Start/End: Complemental strand, 13624303 - 13624071
Alignment:
Q  47 aaaatttctctaaaagagggatgttcaaattacggaacattcttattcttcgtaattttgagaacgaaggtcgcgtccttcgcacgggttgaatacnnnn 146  Q
    |||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  13624303 aaaatttctctaaaggagagatgttcaaattacggaacattcctattcttcgtaattttgagaacgaaggtcgcgtccttcgcacgggttgaatactgtt 13624204  T
Q  147 nnnnnnnnnnnaatccttactacatgtttaaataagtcaaatgaaactgatttcttaagataaaatccaagtgtactaagccaatcccaaaatgttaccg 246  Q
               ||||||||||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  13624203 tttttta----aatccttactatatgtttgaataagtcaaatgaaactgatttcctaagataaaatccaagtgtactaagccaatcccaaaatgttaccg 13624108  T
Q  247 cattaaataagaaacacagccaaatagtgcacatatt 283  Q
    || |||||||| ||||||||||||||||||| |||||    
T  13624107 cactaaataaggaacacagccaaatagtgcaaatatt 13624071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 47 - 257
Target Start/End: Original strand, 52037441 - 52037652
Alignment:
Q  47 aaaatttctctaaaagagggatgttcaaattacggaacattcttattcttcgtaattttgagaacgaaggtcgcgtccttcgcacgggttgaatacnnnn 146  Q
    |||||| ||||||| ||| ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  52037441 aaaattcctctaaaggagagatgttcaaattacggaacattgctattcttcgtaattttgagaacgaaggtcgcgtccttcgcacgggttgaatactgtt 52037540  T
Q  147 nnnnnnnnnnnaa-tccttactacatgtttaaataagtcaaatgaaactgatttcttaagataaaatccaagtgtactaagccaatcccaaaatgttacc 245  Q
               || ||||||||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||     
T  52037541 tttttttttaaaaatccttactatatgtttgaataagtcaaatgaaactgatttcctaagataaaatccaagtgtactaagccaatcccaaaatgttacg 52037640  T
Q  246 gcattaaataag 257  Q
    ||| ||||||||    
T  52037641 gcactaaataag 52037652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 114; Significance: 8e-58; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 54 - 257
Target Start/End: Original strand, 1685106 - 1685311
Alignment:
Q  54 ctctaaaagagggatgttcaaattacggaacattcttattcttcgtaattttgagaacgaaggtcgcgtccttcgcacgggttgaatacnnnnnnnnnnn 153  Q
    ||||||| ||| ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||               
T  1685106 ctctaaaggagagatgttcaaattacggaacattgctattcttcgtaattttgagaacgaaggtcgcgtccttcgcacgggttgaatactgttttttttt 1685205  T
Q  154 nnnnaa--tccttactacatgtttaaataagtcaaatgaaactgatttcttaagataaaatccaagtgtactaagccaatcccaaaatgttaccgcatta 251  Q
        ||  ||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||    
T  1685206 taaaaaaatccttactatatgtttgaataagtcaaatgaaactgatttcctaagataaaatccaagtgtactaagccaatcccaaaatgttacggcacta 1685305  T
Q  252 aataag 257  Q
    ||||||    
T  1685306 aataag 1685311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 158 - 257
Target Start/End: Complemental strand, 39954665 - 39954566
Alignment:
Q  158 aatccttactacatgtttaaataagtcaaatgaaactgatttcttaagataaaatccaagtgtactaagccaatcccaaaatgttaccgcattaaataag 257  Q
    |||| ||| ||||||||| |||||| ||||||||||  ||||   || |||||||| |||||||||||| |||||| |||||||||| ||| ||||||||    
T  39954665 aatcattaatacatgtttgaataagacaaatgaaaccaatttaccaatataaaatctaagtgtactaagtcaatcctaaaatgttacagcactaaataag 39954566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 102; Significance: 1e-50; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 66 - 257
Target Start/End: Complemental strand, 41053776 - 41053588
Alignment:
Q  66 gatgttcaaattacggaacattcttattcttcgtaattttgagaacgaaggtcgcgtccttcgcacgggttgaatacnnnnnnnnnnnnnnnaatcctta 165  Q
    |||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||               ||||||||    
T  41053776 gatgttcaaattacggaacattgttattctttgtaattttaagaacgaaggtcgcgtccttcgcacgggttgaatactgtttttttgga---aatcctta 41053680  T
Q  166 ctacatgtttaaataagtcaaatgaaactgatttcttaagataaaatccaagtgtactaagccaatcccaaaatgttaccgcattaaataag 257  Q
    ||| |||| | |||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  41053679 ctatatgtctgaataagacaaatgaaaccgatttcctaagataaaatccaagtgtactaagccaatcccaaaatgttaccgcactaaataag 41053588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 66 - 122
Target Start/End: Original strand, 42614306 - 42614362
Alignment:
Q  66 gatgttcaaattacggaacattcttattcttcgtaattttgagaacgaaggtcgcgt 122  Q
    ||||||||||||||| |||||| |||||||||| || ||||||||||||||||||||    
T  42614306 gatgttcaaattacgaaacattgttattcttcgaaaatttgagaacgaaggtcgcgt 42614362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 107
Target Start/End: Original strand, 9878399 - 9878440
Alignment:
Q  66 gatgttcaaattacggaacattcttattcttcgtaattttga 107  Q
    |||||||||||| ||||||||| ||||||||||||| |||||    
T  9878399 gatgttcaaatttcggaacattgttattcttcgtaaatttga 9878440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 6e-34; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 66 - 257
Target Start/End: Complemental strand, 44800627 - 44800441
Alignment:
Q  66 gatgttcaaattacggaacattcttattcttcgtaattttgagaacgaaggtcgcgtccttcgcacgggttgaatacnnnnnnnnnnnnnnnaatcctta 165  Q
    ||||||||||||||| ||||||  |||||||||||| ||||||||||||||| ||||||||||||||| |||| |||               ||||||||    
T  44800627 gatgttcaaattacgaaacattgctattcttcgtaaatttgagaacgaaggttgcgtccttcgcacggattgagtactgttttttta-----aatcctta 44800533  T
Q  166 ctacatgtttaaataagtcaaatgaaactgatttcttaagataaaatccaagtgtactaagccaatcccaaaatgttaccgcattaaataag 257  Q
    |||  ||||| |||||| |||||||||| |||||  ||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||    
T  44800532 ctatctgtttgaataagacaaatgaaaccgatttactaagataaaatccaagtgtactaagtcaattccaaaatgttaccgcactaaataag 44800441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 66 - 141
Target Start/End: Original strand, 45003731 - 45003806
Alignment:
Q  66 gatgttcaaattacggaacattcttattcttcgtaattttgagaacgaaggtcgcgtccttcgcacgggttgaata 141  Q
    |||||||||||||||||| ||| |  |||||| ||| |||||||||||||||| | | ||||||||||||||||||    
T  45003731 gatgttcaaattacggaatattgtcgttcttcataaatttgagaacgaaggtcacatgcttcgcacgggttgaata 45003806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 66 - 117
Target Start/End: Original strand, 25123500 - 25123551
Alignment:
Q  66 gatgttcaaattacggaacattcttattcttcgtaattttgagaacgaaggt 117  Q
    |||||||||||||||||||||| | |||||||||||  ||||||||||||||    
T  25123500 gatgttcaaattacggaacattgtcattcttcgtaaacttgagaacgaaggt 25123551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 15084357 - 15084410
Alignment:
Q  54 ctctaaaagagggatgttcaaattacggaacattcttattcttcgtaattttga 107  Q
    ||||||| |||  |||||||||||||||||||||  |||||||||||| |||||    
T  15084357 ctctaaaggagatatgttcaaattacggaacattgctattcttcgtaaatttga 15084410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 9e-33; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 158 - 257
Target Start/End: Original strand, 37477961 - 37478060
Alignment:
Q  158 aatccttactacatgtttaaataagtcaaatgaaactgatttcttaagataaaatccaagtgtactaagccaatcccaaaatgttaccgcattaaataag 257  Q
    ||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||| ||| ||||||||    
T  37477961 aatccttactatatgtttgaataagtcaaatgaaactgatttcctaagataaaatccaaatgtactaagtcaatcccaaaatgttactgcagtaaataag 37478060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 117
Target Start/End: Complemental strand, 25731121 - 25731051
Alignment:
Q  47 aaaatttctctaaaagagggatgttcaaattacggaacattcttattcttcgtaattttgagaacgaaggt 117  Q
    |||||| ||||||| ||| |||||||||||||||  ||||| | | ||||||||| |||||||||||||||    
T  25731121 aaaattgctctaaaggagagatgttcaaattacgcgacattgtcagtcttcgtaaatttgagaacgaaggt 25731051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 54 - 111
Target Start/End: Original strand, 33097893 - 33097950
Alignment:
Q  54 ctctaaaagagggatgttcaaattacggaacattcttattcttcgtaattttgagaac 111  Q
    ||||||| ||| |||||||||||||||||||||| | ||||||||||| ||| |||||    
T  33097893 ctctaaaggagagatgttcaaattacggaacattgtcattcttcgtaaatttaagaac 33097950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 21895132 - 21895079
Alignment:
Q  54 ctctaaaagagggatgttcaaattacggaacattcttattcttcgtaattttga 107  Q
    ||||||| |||  |||||||||||||||||||||  |||||||||||| |||||    
T  21895132 ctctaaaggagatatgttcaaattacggaacattactattcttcgtaaatttga 21895079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 110
Target Start/End: Original strand, 25350167 - 25350208
Alignment:
Q  69 gttcaaattacggaacattcttattcttcgtaattttgagaa 110  Q
    ||||||||||||||||||| | ||||||||||| ||||||||    
T  25350167 gttcaaattacggaacattgtcattcttcgtaaatttgagaa 25350208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 110
Target Start/End: Original strand, 25355861 - 25355902
Alignment:
Q  69 gttcaaattacggaacattcttattcttcgtaattttgagaa 110  Q
    ||||||||||||||||||| | ||||||||||| ||||||||    
T  25355861 gttcaaattacggaacattgtcattcttcgtaaatttgagaa 25355902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 47 - 141
Target Start/End: Complemental strand, 1694882 - 1694788
Alignment:
Q  47 aaaatttctctaaaagagggatgttcaaattacggaacattcttattcttcgtaattttgagaacgaaggtcgcgtccttcgcacgggttgaata 141  Q
    |||||| ||||||| |||  |||||||||| ||||||||||  |||||||||||| |||||||||||||||| | | |||| ||| |||||||||    
T  1694882 aaaattgctctaaaggagatatgttcaaatcacggaacattgctattcttcgtaaatttgagaacgaaggtcccatgcttcacactggttgaata 1694788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 66 - 141
Target Start/End: Complemental strand, 5483006 - 5482931
Alignment:
Q  66 gatgttcaaattacggaacattcttattcttcgtaattttgagaacgaaggtcgcgtccttcgcacgggttgaata 141  Q
    |||||||||||||||||| ||| |  |||||| ||| |||||||||||||||| | | ||||||||||||||||||    
T  5483006 gatgttcaaattacggaatattgtcgttcttcataaatttgagaacgaaggtcacatgcttcgcacgggttgaata 5482931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 111
Target Start/End: Original strand, 1967484 - 1967538
Alignment:
Q  57 taaaagagggatgttcaaattacggaacattcttattcttcgtaattttgagaac 111  Q
    ||||||||  ||||||||||||||||||||| | ||||||||||| || ||||||    
T  1967484 taaaagagaaatgttcaaattacggaacattgtcattcttcgtaaattagagaac 1967538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 130
Target Start/End: Original strand, 36678788 - 36678862
Alignment:
Q  54 ctctaaaagagggatgttcaaattacggaacattcttattcttcgtaattttgagaacgaaggtcgcgtccttcgca 130  Q
    |||||||||||  ||||| |||||||  ||||||  |||| ||||||| ||||||||||||||||| || |||||||    
T  36678788 ctctaaaagag--atgtttaaattacaaaacattgctatttttcgtaaatttgagaacgaaggtcgtgtgcttcgca 36678862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 66 - 141
Target Start/End: Original strand, 2680305 - 2680380
Alignment:
Q  66 gatgttcaaattacggaacattcttattcttcgtaattttgagaacgaaggtcgcgtccttcgcacgggttgaata 141  Q
    |||||||||||||||||| ||| |  |||||| ||| |||||||||||||||| | | ||||||||||||||||||    
T  2680305 gatgttcaaattacggaatattgtcgttcttcataaatttgagaacgaaggtcacatgcttcgcacgggttgaata 2680380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 55 - 120
Target Start/End: Original strand, 24847957 - 24848022
Alignment:
Q  55 tctaaaagagggatgttcaaattacggaacattcttattcttcgtaattttgagaacgaaggtcgc 120  Q
    |||||| ||| |||||||||||||   |||||| | ||||||||||| ||||||||||||||||||    
T  24847957 tctaaaggagagatgttcaaattataaaacattgtcattcttcgtaaatttgagaacgaaggtcgc 24848022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 55 - 118
Target Start/End: Original strand, 28940772 - 28940835
Alignment:
Q  55 tctaaaagagggatgttcaaattacggaacattcttattcttcgtaattttgagaacgaaggtc 118  Q
    |||||| ||| |||||||||||||| ||||||| | |||||||||||  |||||||| ||||||    
T  28940772 tctaaaggagagatgttcaaattacagaacattgtcattcttcgtaaacttgagaacaaaggtc 28940835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University