View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17325_low_18 (Length: 281)
Name: NF17325_low_18
Description: NF17325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17325_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 32 - 263
Target Start/End: Complemental strand, 32913018 - 32912787
Alignment:
| Q |
32 |
taacaaagctatcaactttcatagcaaaaacttaccaaatccatcaacgagcaacacatactgatatataagatccatgcatacatatgaagctatattt |
131 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32913018 |
taacaaagctatcaactttcgtagcaaaaacttaccaaatccatcaacgagcaacacatactgatatataagatccatgcatacatatgaagctatattt |
32912919 |
T |
|
| Q |
132 |
ttcttagcaagaaatggataagtggatttggcatcctcaaagtttaatgcacaagctttcttagcttcactcacgagatccacaggacgaattttgaaat |
231 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32912918 |
ttcttagcaagaaatggataagtggatttggcatcctcaaagtttaatgcacaagctttcttagcttcactcacgagatccacaggacgaattttgaaat |
32912819 |
T |
|
| Q |
232 |
taggtgtctttggattaaccataccaacctaa |
263 |
Q |
| |
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||||||||||||||| |||||||||||||||| |
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| T |
32912818 |
taggtgtctttggatcaaccataccaacctaa |
32912787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 59 - 222
Target Start/End: Complemental strand, 32924972 - 32924809
Alignment:
| Q |
59 |
aaacttaccaaatccatcaacgagcaacacatactgatatataagatccatgcatacatatgaagctatatttttcttagcaagaaatggataagtggat |
158 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| | |||||| ||||||||| ||| |
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| T |
32924972 |
aaacttaccaaatccatcaacgagcaacacgtactgatatataagatccatgcatacatattctactatattgaaatccacaagaagtggataagttgat |
32924873 |
T |
|
| Q |
159 |
ttggcatcctcaaagtttaatgcacaagctttcttagcttcactcacgagatccacaggacgaa |
222 |
Q |
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| T |
32924872 |
ttggcctcctcaagatttaatgtacaagctttcttagcttcagtctcaagatccacaggacgaa |
32924809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 59 - 263
Target Start/End: Complemental strand, 32935973 - 32935772
Alignment:
| Q |
59 |
aaacttaccaaatccatcaacgagcaacacatactgatatataagatccatgcatacatatgaagctatatttttcttagcaagaaatggataagtggat |
158 |
Q |
| |
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|||| |||||||||||| |||||||||||||| ||| |||| |||||||| |||||||||| | | | | |||| | ||| ||||||||||||| |
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| T |
32935973 |
aaacctaccaaatccatgaacgagcaacacatgctggtataagagatccatacatacatatgga-cgttttgcttct--gtaagtcgtggataagtggat |
32935877 |
T |
|
| Q |
159 |
ttggcatcctcaaagtttaatgcacaagctttcttagcttcactcacgagatccacaggacgaattttgaaattaggtgtctttggattaaccataccaa |
258 |
Q |
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||| |||||||||||||||||||||||||| ||||||||| | ||| ||| | ||| ||| | || |||||||| | ||||| | ||||||||||| |
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| T |
32935876 |
ttgacatcctcaaagtttaatgcacaagctcgtttagcttcaatttcgaaatctattggatgaagtatggaattaggtttatttggctcaaccataccaa |
32935777 |
T |
|
| Q |
259 |
cctaa |
263 |
Q |
| |
|
||||| |
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|
| T |
32935776 |
cctaa |
32935772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 57 - 200
Target Start/End: Complemental strand, 32927796 - 32927656
Alignment:
| Q |
57 |
aaaaacttaccaaatccatcaacgagcaacacatactgatatataagatccatgcatacatat-gaagctatatttttcttagcaagaaatggataagtg |
155 |
Q |
| |
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|||||| ||||||||||| |||||||||||||| ||| |||| |||||||||||||||||| || || |||| || | |||| ||| |||||| |
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| T |
32927796 |
aaaaacctaccaaatccacaaacgagcaacacatgctggtataagagatccatgcatacatatggacgc----ttttcctccgtaagacgtgggtaagtg |
32927701 |
T |
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| Q |
156 |
gatttggcatcctcaaagtttaatgcacaagctttcttagcttca |
200 |
Q |
| |
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||||| |||||||||||||||||| ||||||| |||||||||| |
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| T |
32927700 |
tatttgacatcctcaaagtttaatgtacaagctcgcttagcttca |
32927656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 58 - 263
Target Start/End: Complemental strand, 11825294 - 11825089
Alignment:
| Q |
58 |
aaaacttaccaaatccatcaacgagcaacacatactgatatataagatccatgcatacatatgaagctatatttttcttagcaagaaatggataagtgga |
157 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
11825294 |
aaaacttaccaaatccatcaacgagcaacacatactgatatataagatccatgcatacatatgaagctatatttttcttagcaagaaatggataactgga |
11825195 |
T |
|
| Q |
158 |
tttggcatcctcaaagtttaatgcacaagctttcttagcttcactcacgagatccacaggacgaattttgaaattaggtgtctttggattaaccatacca |
257 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||| | ||||||| |||||||||| |
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| T |
11825194 |
tttggcatcctcaaaatttaatgcacaagctttcttagcttcactctcgaaatccacaggtcgaattttgaaattaggtttatttggatcaaccatacca |
11825095 |
T |
|
| Q |
258 |
acctaa |
263 |
Q |
| |
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|||||| |
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|
| T |
11825094 |
acctaa |
11825089 |
T |
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