View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17325_low_21 (Length: 240)

Name: NF17325_low_21
Description: NF17325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17325_low_21
NF17325_low_21
[»] chr6 (4 HSPs)
chr6 (103-224)||(22846476-22846597)
chr6 (1-102)||(22840441-22840542)
chr6 (103-224)||(12310702-12310822)
chr6 (190-223)||(23220135-23220168)
[»] scaffold0080 (1 HSPs)
scaffold0080 (103-224)||(25309-25429)
[»] chr8 (2 HSPs)
chr8 (103-224)||(37655342-37655462)
chr8 (190-224)||(22312102-22312136)
[»] chr4 (6 HSPs)
chr4 (103-224)||(41258049-41258166)
chr4 (103-224)||(42707060-42707179)
chr4 (127-224)||(50223860-50223957)
chr4 (127-221)||(47470038-47470132)
chr4 (190-224)||(15043312-15043346)
chr4 (190-224)||(15111078-15111112)
[»] chr1 (4 HSPs)
chr1 (103-204)||(21193516-21193616)
chr1 (103-224)||(37235658-37235776)
chr1 (107-166)||(41213423-41213481)
chr1 (121-224)||(22145087-22145190)
[»] scaffold0021 (3 HSPs)
scaffold0021 (104-224)||(23777-23895)
scaffold0021 (103-224)||(19513-19632)
scaffold0021 (103-224)||(29089-29208)
[»] scaffold0004 (1 HSPs)
scaffold0004 (127-224)||(25929-26026)
[»] chr5 (4 HSPs)
chr5 (106-224)||(21615367-21615483)
chr5 (106-224)||(19860589-19860704)
chr5 (190-224)||(3672369-3672403)
chr5 (188-224)||(24227164-24227200)
[»] chr7 (4 HSPs)
chr7 (103-224)||(9058329-9058441)
chr7 (127-221)||(9322765-9322859)
chr7 (190-224)||(8565276-8565310)
chr7 (190-224)||(21676732-21676766)
[»] scaffold0292 (1 HSPs)
scaffold0292 (103-174)||(8726-8796)
[»] chr3 (3 HSPs)
chr3 (127-222)||(41659985-41660080)
chr3 (190-224)||(12951424-12951458)
chr3 (190-224)||(38377514-38377548)
[»] scaffold0331 (1 HSPs)
scaffold0331 (190-224)||(17821-17855)
[»] scaffold0174 (1 HSPs)
scaffold0174 (190-224)||(21792-21826)
[»] scaffold0057 (1 HSPs)
scaffold0057 (190-224)||(4373-4407)
[»] chr2 (3 HSPs)
chr2 (190-224)||(19435162-19435196)
chr2 (190-224)||(20271821-20271855)
chr2 (142-215)||(24272444-24272517)


Alignment Details
Target: chr6 (Bit Score: 118; Significance: 2e-60; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 103 - 224
Target Start/End: Original strand, 22846476 - 22846597
Alignment:
Q  103 aataaatcaattcaagtaatcatataattaatcaagagtaattaattcccatatacacattcataccataatttcaaagtctcacaatatgtattcatca 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  22846476 aataaatcaattcaagtaatcatataattaatcaagagtaattaattcccatatacacattcataccataatttcaaagtctcataatatgtattcatca 22846575  T
Q  203 aacacacttatcaccaacaatc 224  Q
    ||||||||||||||||||||||    
T  22846576 aacacacttatcaccaacaatc 22846597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 22840441 - 22840542
Alignment:
Q  1 ttataaacggatatattcactaaggttcctcatattcatttatctgtcaatacaaccgcacagtgtgtgcaacaccgctaccatcgaaacagaatctcga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22840441 ttataaacggatatattcactaaggttcctcatattcatttatctgtcaatacaaccgcacagtgtgtgcaacaccgctaccatcgaaacagaatctcga 22840540  T
Q  101 ct 102  Q
    ||    
T  22840541 ct 22840542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 103 - 224
Target Start/End: Complemental strand, 12310822 - 12310702
Alignment:
Q  103 aataaatcaattcaagtaatcatataattaatcaagagtaattaattcccatatacacattcataccataatttcaaagtctcacaatatgtattcatca 202  Q
    ||||| |||||||||||| |||||||||||||||||||||||||||| || ||||||||||||| |||||||| |||| ||||| |||||||||||||||    
T  12310822 aataagtcaattcaagta-tcatataattaatcaagagtaattaatttccctatacacattcatgccataattccaaaatctcataatatgtattcatca 12310724  T
Q  203 aacacacttatcaccaacaatc 224  Q
    ||||||||||||| ||||||||    
T  12310723 aacacacttatcatcaacaatc 12310702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 223
Target Start/End: Original strand, 23220135 - 23220168
Alignment:
Q  190 tatgtattcatcaaacacacttatcaccaacaat 223  Q
    |||||||||||||||||||||||||| |||||||    
T  23220135 tatgtattcatcaaacacacttatcatcaacaat 23220168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0080 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: scaffold0080
Description:

Target: scaffold0080; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 103 - 224
Target Start/End: Complemental strand, 25429 - 25309
Alignment:
Q  103 aataaatcaattcaagtaatcatataattaatcaagagtaattaattcccatatacacattcataccataatttcaaagtctcacaatatgtattcatca 202  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||| ||||  ||| |||||||||||||||||||||    
T  25429 aataaatcaattcaagta-tcatataattaatcaagagtaattaatttccatatacacattcattccaaaattcaaaaatctcacaatatgtattcatca 25331  T
Q  203 aacacacttatcaccaacaatc 224  Q
    |||||| |||||| ||||||||    
T  25330 aacacatttatcatcaacaatc 25309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 103 - 224
Target Start/End: Complemental strand, 37655462 - 37655342
Alignment:
Q  103 aataaatcaattcaagtaatcatataattaatcaagagtaattaattcccatatacacattcataccataatttcaaagtctcacaatatgtattcatca 202  Q
    |||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||| |||||  || |||| |||| |||||||||||||||||||||    
T  37655462 aataaatcaattcaagta-tcatataattaatcaagagtaataaatttccatatacacgttcatttcaaaattccaaaatctcacaatatgtattcatca 37655364  T
Q  203 aacacacttatcaccaacaatc 224  Q
    || |||||||||| ||||||||    
T  37655363 aagacacttatcatcaacaatc 37655342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 224
Target Start/End: Original strand, 22312102 - 22312136
Alignment:
Q  190 tatgtattcatcaaacacacttatcaccaacaatc 224  Q
    |||||||||||||||||||||||||| ||||||||    
T  22312102 tatgtattcatcaaacacacttatcatcaacaatc 22312136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 103 - 224
Target Start/End: Complemental strand, 41258166 - 41258049
Alignment:
Q  103 aataaatcaattcaagtaatcatataattaatcaagagtaattaattcccatatacacattcataccataatttcaaagtctcacaatatgtattcatca 202  Q
    |||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||| ||||||||||  ||||| |||    
T  41258166 aataaatcaatt-aagta-tcatataattaatcaagagtaattaatttccatatacacattcatgccataattccaaaatctcacaata--tattcgtca 41258071  T
Q  203 aacacacttatcaccaacaatc 224  Q
    ||||||||||||| ||||||||    
T  41258070 aacacacttatcatcaacaatc 41258049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 103 - 224
Target Start/End: Original strand, 42707060 - 42707179
Alignment:
Q  103 aataaatcaattcaagtaatcatataattaatcaagagtaattaattcccatatacacattcataccataatttcaaagtctcacaatatgtattcatca 202  Q
    ||||| |||||||||||| ||| ||||||||||| |||||| ||| | |||| ||||||| | | | |||||| |||  |||||||||||||||||||||    
T  42707060 aataattcaattcaagta-tcacataattaatcacgagtaaataagttccatgtacacatacttgctataattccaat-tctcacaatatgtattcatca 42707157  T
Q  203 aacacacttatcaccaacaatc 224  Q
    ||||||||||||| ||| ||||    
T  42707158 aacacacttatcatcaataatc 42707179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 127 - 224
Target Start/End: Complemental strand, 50223957 - 50223860
Alignment:
Q  127 taattaatcaagagtaattaattcccatatacacattcataccataatttcaaagtctcacaa-tatgtattcatcaaacacacttatcaccaacaatc 224  Q
    |||||||||| ||| |||| ||| |||||||||||||||| | | |||| |||| | |||||| |||||||||||||||||||||||||| ||||||||    
T  50223957 taattaatcatgagcaatttatttccatatacacattcatgcaacaattccaaa-tatcacaagtatgtattcatcaaacacacttatcatcaacaatc 50223860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 221
Target Start/End: Complemental strand, 47470132 - 47470038
Alignment:
Q  127 taattaatcaagagtaattaattcccatatacacattcataccataatttcaaagtctcacaa-tatgtattcatcaaacacacttatcaccaaca 221  Q
    ||||||| || ||| |||||||| |||||||||||||||| | | |||| |||| | |||||| |||| |||||||||||||||| |||| |||||    
T  47470132 taattaaacatgagcaattaatttccatatacacattcatgcaacaattccaaa-tatcacaagtatgcattcatcaaacacactgatcatcaaca 47470038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 224
Target Start/End: Original strand, 15043312 - 15043346
Alignment:
Q  190 tatgtattcatcaaacacacttatcaccaacaatc 224  Q
    |||||||||||||||||||||||||| ||||||||    
T  15043312 tatgtattcatcaaacacacttatcatcaacaatc 15043346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 224
Target Start/End: Complemental strand, 15111112 - 15111078
Alignment:
Q  190 tatgtattcatcaaacacacttatcaccaacaatc 224  Q
    |||||||||||||||||||||||||| ||||||||    
T  15111112 tatgtattcatcaaacacacttatcatcaacaatc 15111078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 6e-27; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 103 - 204
Target Start/End: Original strand, 21193516 - 21193616
Alignment:
Q  103 aataaatcaattcaagtaatcatataattaatcaagagtaattaattcccatatacacattcataccataatttcaaagtctcacaatatgtattcatca 202  Q
    |||||||||||||| ||| |||||| ||||||||||||||||||||| |||||| ||||||||| |||||||| |||| ||||||| |||||||||||||    
T  21193516 aataaatcaattcaggta-tcatatcattaatcaagagtaattaatttccatatccacattcatgccataattccaaaatctcacagtatgtattcatca 21193614  T
Q  203 aa 204  Q
    ||    
T  21193615 aa 21193616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 103 - 224
Target Start/End: Complemental strand, 37235776 - 37235658
Alignment:
Q  103 aataaatcaattcaagtaatcatataattaatcaagagtaattaattcccatatacacattcataccataatttcaaagtctcacaatatgtattcatca 202  Q
    ||||||||||||||||||| ||| | ||||||||||||||||||||| ||||||||||||||||  || |||| |||| ||| |||| ||||||| ||||    
T  37235776 aataaatcaattcaagtaa-catttcattaatcaagagtaattaatttccatatacacattcat-tcaaaattccaaa-tcttacaacatgtatttatca 37235680  T
Q  203 aacacacttatcaccaacaatc 224  Q
    ||||||||||||| ||||||||    
T  37235679 aacacacttatcatcaacaatc 37235658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 166
Target Start/End: Complemental strand, 41213481 - 41213423
Alignment:
Q  107 aatcaattcaagtaatcatataattaatcaagagtaattaattcccatatacacattcat 166  Q
    |||||| ||||||| ||| ||||||||||||||| |||||||| ||||||||||||||||    
T  41213481 aatcaaatcaagta-tcaaataattaatcaagagcaattaatttccatatacacattcat 41213423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 224
Target Start/End: Complemental strand, 22145190 - 22145087
Alignment:
Q  121 atcatataattaatcaagagtaattaattcccatatacacattcataccataatttcaaagtctca-caatatgtattcatcaaacacacttatcaccaa 219  Q
    ||||||||||||||||||||| | ||| | ||||||| ||| |||||||| |||| || | |||||  |||| ||||| | |||||||| |||||| |||    
T  22145190 atcatataattaatcaagagtcaataacttccatatatacactcataccacaattccaca-tctcataaataagtatttaacaaacacatttatcatcaa 22145092  T
Q  220 caatc 224  Q
    |||||    
T  22145091 caatc 22145087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 57; Significance: 6e-24; HSPs: 3)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 104 - 224
Target Start/End: Complemental strand, 23895 - 23777
Alignment:
Q  104 ataaatcaattcaagtaatcatataattaatcaagagtaattaattcccatatacacattcataccataatttcaaagtctcacaatatgtattcatcaa 203  Q
    |||| |||||||||||| ||| |||||||||||||||| | ||||| |||||||||||||| | | |||||| |||  ||||||||||||||||||||||    
T  23895 ataattcaattcaagta-tcacataattaatcaagagttaataatttccatatacacattcttgctataattccaat-tctcacaatatgtattcatcaa 23798  T
Q  204 acacacttatcaccaacaatc 224  Q
    |||||| ||||| ||||||||    
T  23797 acacacgtatcatcaacaatc 23777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 103 - 224
Target Start/End: Complemental strand, 19632 - 19513
Alignment:
Q  103 aataaatcaattcaagtaatcatataattaatcaagagtaattaattcccatatacacattcataccataatttcaaagtctcacaatatgtattcatca 202  Q
    ||||| |||||||||||| ||| |||||||||||||||||| ||||| |||||| ||||||| | | |||||| |||  |||||||||||||||||||||    
T  19632 aataattcaattcaagta-tcacataattaatcaagagtaaataatttccatatgcacattcttgctataattccaat-tctcacaatatgtattcatca 19535  T
Q  203 aacacacttatcaccaacaatc 224  Q
    |||| || ||||| ||||||||    
T  19534 aacaaacctatcatcaacaatc 19513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 103 - 224
Target Start/End: Complemental strand, 29208 - 29089
Alignment:
Q  103 aataaatcaattcaagtaatcatataattaatcaagagtaattaattcccatatacacattcataccataatttcaaagtctcacaatatgtattcatca 202  Q
    ||||| |||||||||||| ||| |||||||||||||||||| ||||| |||||| ||||||| | | |||||| |||  |||||||||||||||||||||    
T  29208 aataattcaattcaagta-tcacataattaatcaagagtaaataatttccatatgcacattcttgctataattccaat-tctcacaatatgtattcatca 29111  T
Q  203 aacacacttatcaccaacaatc 224  Q
    |||| || ||||| ||||||||    
T  29110 aacaaacctatcatcaacaatc 29089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 127 - 224
Target Start/End: Original strand, 25929 - 26026
Alignment:
Q  127 taattaatcaagagtaattaattcccatatacacattcataccataatttcaaagtctcacaa-tatgtattcatcaaacacacttatcaccaacaatc 224  Q
    |||||||||||||| |||||||| |||||||||||||||| | | |||| |||| |||||||| |||||||||||||||||||| ||||| ||||||||    
T  25929 taattaatcaagagcaattaatttccatatacacattcatgcaacaattccaaa-tctcacaagtatgtattcatcaaacacacctatcaacaacaatc 26026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 106 - 224
Target Start/End: Original strand, 21615367 - 21615483
Alignment:
Q  106 aaatcaattcaagtaatcatataattaatcaagagtaattaattcccatatacacattcataccataatttcaaagtctcacaatatgtattcatcaaac 205  Q
    ||||||||||| |||| ||| | ||||||||||| ||||||||| |||||||||||||||| | | |||| |||| ||| |||| ||||||| |||||||    
T  21615367 aaatcaattcatgtaa-catttcattaatcaagaataattaatttccatatacacattcattcaaaaattccaaa-tcttacaacatgtatttatcaaac 21615464  T
Q  206 acacttatcaccaacaatc 224  Q
    |||||||||| ||||||||    
T  21615465 acacttatcatcaacaatc 21615483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 106 - 224
Target Start/End: Original strand, 19860589 - 19860704
Alignment:
Q  106 aaatcaattcaagtaatcatataattaatcaagagtaattaattcccatatacacattcataccataatttcaaagtctcacaatatgtattcatcaaac 205  Q
    |||||||||||||||| ||| | ||||||||||| |||||| || |||||||||||||||| | | |||| |||| ||| |||| ||||||| |||||||    
T  19860589 aaatcaattcaagtaa-catttcattaatcaagaataattagtttccatatacacattcatgcaa-aattccaaa-tctgacaacatgtatttatcaaac 19860685  T
Q  206 acacttatcaccaacaatc 224  Q
    |||||||||| ||||||||    
T  19860686 acacttatcatcaacaatc 19860704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 224
Target Start/End: Original strand, 3672369 - 3672403
Alignment:
Q  190 tatgtattcatcaaacacacttatcaccaacaatc 224  Q
    |||||||||||||||||||||||||| ||||||||    
T  3672369 tatgtattcatcaaacacacttatcatcaacaatc 3672403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 224
Target Start/End: Complemental strand, 24227200 - 24227164
Alignment:
Q  188 aatatgtattcatcaaacacacttatcaccaacaatc 224  Q
    ||||||||||||||||||||||||||||  |||||||    
T  24227200 aatatgtattcatcaaacacacttatcattaacaatc 24227164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 103 - 224
Target Start/End: Complemental strand, 9058441 - 9058329
Alignment:
Q  103 aataaatcaattcaagtaatcatataattaatcaagagtaattaattcccatatacacattcataccataatttcaaagtctcacaatatgtattcatca 202  Q
    |||||||||||||||| | |||| | ||||||||||||||||||||  |||||||||||||||| ||| |||        ||||||||||||||| ||||    
T  9058441 aataaatcaattcaagca-tcatttcattaatcaagagtaattaatatccatatacacattcattccaaaat--------ctcacaatatgtatttatca 9058351  T
Q  203 aacacacttatcaccaacaatc 224  Q
    ||||||||||||| ||||||||    
T  9058350 aacacacttatcatcaacaatc 9058329  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 127 - 221
Target Start/End: Complemental strand, 9322859 - 9322765
Alignment:
Q  127 taattaatcaagagtaattaattcccatatacacattcataccataatttcaaagtctcacaa-tatgtattcatcaaacacacttatcaccaaca 221  Q
    |||||||| | ||| |||||||| |||||||||||||||| | | |||| ||| || |||||| |||||||||||||||||||||||||| |||||    
T  9322859 taattaattatgagcaattaatttccatatacacattcatgcaacaattccaa-gtatcacaagtatgtattcatcaaacacacttatcatcaaca 9322765  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 224
Target Start/End: Complemental strand, 8565310 - 8565276
Alignment:
Q  190 tatgtattcatcaaacacacttatcaccaacaatc 224  Q
    |||||||||||||||||||||||||| ||||||||    
T  8565310 tatgtattcatcaaacacacttatcatcaacaatc 8565276  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 224
Target Start/End: Complemental strand, 21676766 - 21676732
Alignment:
Q  190 tatgtattcatcaaacacacttatcaccaacaatc 224  Q
    |||||||||||||||||||||||||| ||||||||    
T  21676766 tatgtattcatcaaacacacttatcaacaacaatc 21676732  T

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Target: scaffold0292 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0292
Description:

Target: scaffold0292; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 103 - 174
Target Start/End: Complemental strand, 8796 - 8726
Alignment:
Q  103 aataaatcaattcaagtaatcatataattaatcaagagtaattaattcccatatacacattcataccataat 174  Q
    |||||||||||||||||| ||| ||||||||||| |||||||||| | |||||||||||||| | |||||||    
T  8796 aataaatcaattcaagta-tcacataattaatcaggagtaattaacttccatatacacattcttgccataat 8726  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 222
Target Start/End: Original strand, 41659985 - 41660080
Alignment:
Q  127 taattaatcaagagtaattaattcccatatacacattcataccataatttcaaagtctcacaa-tatgtattcatcaaacacacttatcaccaacaa 222  Q
    |||||||||| ||| ||||||||  |||||||||| |||| | | ||||||||  |||||||| || |||||||||||| |||||||||| ||||||    
T  41659985 taattaatcatgagcaattaattttcatatacacaatcatgcaacaatttcaat-tctcacaaataagtattcatcaaatacacttatcatcaacaa 41660080  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 224
Target Start/End: Original strand, 12951424 - 12951458
Alignment:
Q  190 tatgtattcatcaaacacacttatcaccaacaatc 224  Q
    |||||||||||||||||||||||||| ||||||||    
T  12951424 tatgtattcatcaaacacacttatcatcaacaatc 12951458  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 224
Target Start/End: Complemental strand, 38377548 - 38377514
Alignment:
Q  190 tatgtattcatcaaacacacttatcaccaacaatc 224  Q
    |||||||||||||||||||||||||| ||||||||    
T  38377548 tatgtattcatcaaacacacttatcatcaacaatc 38377514  T

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Target: scaffold0331 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0331
Description:

Target: scaffold0331; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 224
Target Start/End: Original strand, 17821 - 17855
Alignment:
Q  190 tatgtattcatcaaacacacttatcaccaacaatc 224  Q
    |||||||||||||||||||||||||| ||||||||    
T  17821 tatgtattcatcaaacacacttatcatcaacaatc 17855  T

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Target: scaffold0174 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 224
Target Start/End: Complemental strand, 21826 - 21792
Alignment:
Q  190 tatgtattcatcaaacacacttatcaccaacaatc 224  Q
    |||||||||||||||||||||||||| ||||||||    
T  21826 tatgtattcatcaaacacacttatcatcaacaatc 21792  T

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Target: scaffold0057 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 224
Target Start/End: Original strand, 4373 - 4407
Alignment:
Q  190 tatgtattcatcaaacacacttatcaccaacaatc 224  Q
    |||||||||||||||||||||||||| ||||||||    
T  4373 tatgtattcatcaaacacacttatcatcaacaatc 4407  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 224
Target Start/End: Complemental strand, 19435196 - 19435162
Alignment:
Q  190 tatgtattcatcaaacacacttatcaccaacaatc 224  Q
    |||||||||||||||||||||||||| ||||||||    
T  19435196 tatgtattcatcaaacacacttatcatcaacaatc 19435162  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 224
Target Start/End: Original strand, 20271821 - 20271855
Alignment:
Q  190 tatgtattcatcaaacacacttatcaccaacaatc 224  Q
    |||||||||||||||||||||||||| ||||||||    
T  20271821 tatgtattcatcaaacacacttatcatcaacaatc 20271855  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 215
Target Start/End: Original strand, 24272444 - 24272517
Alignment:
Q  142 aattaattcccatatacacattcataccataatttcaaagtctcacaata-tgtattcatcaaacacacttatca 215  Q
    |||||||| ||||||||||| |||||| | |||| |||| |||||||||  ||||||||||||| ||||||||||    
T  24272444 aattaatttccatatacacaatcatacaacaattccaaa-tctcacaattctgtattcatcaaatacacttatca 24272517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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