View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17325_low_22 (Length: 236)
Name: NF17325_low_22
Description: NF17325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17325_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 16 - 201
Target Start/End: Original strand, 39874355 - 39874540
Alignment:
| Q |
16 |
tctccatagttttgggaagacagatatggttcagtgggttcagaagagtacaactgcaaacctttcctgatgtgttccttcaaaacatacaatgcaggat |
115 |
Q |
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| T |
39874355 |
tctccatagttttgggaagacagatatggttcagtgggttcagaagagtacaactgcaaaccttttctgatgtgttccttcaaaacatacaatgcaggat |
39874454 |
T |
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| Q |
116 |
ttgactgtaatacacaacatcagtaaaaatcaatcaagtatgaaagatagtaaaaatattacatagtacaggcacaagagcttatc |
201 |
Q |
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| T |
39874455 |
ttgactgtaatacacaacatcagtaaaaatcaatcaagtatgaaagatagtaaaaatattacatagtacaggcacaagagcttatc |
39874540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 16 - 201
Target Start/End: Original strand, 44777499 - 44777680
Alignment:
| Q |
16 |
tctccatagttttgggaagacagatatggttcagtgggttcagaagagtacaactgcaaacctttcctgatgtgttccttcaaaacatacaatgcaggat |
115 |
Q |
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|||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |
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| T |
44777499 |
tctccatagttttgggaagacaaatatggttcagtgggctcagaagagtacaactgcaaacctttcctgatgcgttccctcaaaacatacaatgcaggat |
44777598 |
T |
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| Q |
116 |
ttgactgtaatacac--aacatcagtaaaaatcaatcaagtatgaaagatagtaaaaatattacatagtacaggcacaagagcttatc |
201 |
Q |
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| T |
44777599 |
ttgactgtattacacaaaacattagtgcaa------caattgtgttagatagtaaaaaaattacatagtacaggcacaagagcttatc |
44777680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 16 - 117
Target Start/End: Complemental strand, 2900265 - 2900164
Alignment:
| Q |
16 |
tctccatagttttgggaagacagatatggttcagtgggttcagaagagtacaactgcaaacctttcctgatgtgttccttcaaaacatacaatgcaggat |
115 |
Q |
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|||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||| |
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| T |
2900265 |
tctccataattttgggaagacaaatatggttcagtgggctcagaagagtacaactgcagacctttcctgattcgttccctcaaaacatacaatgcaggat |
2900166 |
T |
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| Q |
116 |
tt |
117 |
Q |
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|| |
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| T |
2900165 |
tt |
2900164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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