View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17325_low_23 (Length: 233)
Name: NF17325_low_23
Description: NF17325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17325_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 12631498 - 12631291
Alignment:
| Q |
18 |
tatacttctaaccatatttagagacagttatatgattccaaatgatcatgattacaacatcatagaaagcaaccatttcttgttgtccaaaccatgcgac |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12631498 |
tatacttctaaccatatttagagacagttatatgattccaaatgatcatgattacaacatcatagaaagcaaccatttcttgttgtccaaaccatgcgac |
12631399 |
T |
|
| Q |
118 |
gaaatctatgtggttggtgaaggtgagacacttaacacaattagtgataagtgtaatgatccttttattgttgagaataatcctcatattcatgaccctg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12631398 |
gaaatctatgtggttggtgaaggtgagacacttaacacaattagtgataagtgtaatgatccttttattgttgagaataatcctcatattcatgaccctg |
12631299 |
T |
|
| Q |
218 |
atgatgtc |
225 |
Q |
| |
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|||||||| |
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| T |
12631298 |
atgatgtc |
12631291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 19 - 225
Target Start/End: Complemental strand, 12618681 - 12618475
Alignment:
| Q |
19 |
atacttctaaccatatttagagacagttatatgattccaaatgatcatgattacaacatcatagaaagcaaccatttcttgttgtccaaaccatgcgacg |
118 |
Q |
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|||||||||||||| | |||||| || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12618681 |
atacttctaaccatttatagagatagctatatgattccaaatgatcatgatcacaacatcatagaaagcaaccatttcttgttgtccaaaccatgcgacg |
12618582 |
T |
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| Q |
119 |
aaatctatgtggttggtgaaggtgagacacttaacacaattagtgataagtgtaatgatccttttattgttgagaataatcctcatattcatgaccctga |
218 |
Q |
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| T |
12618581 |
aaatctatgtagttggtgaaggtgagacacttaacacaattagtgataagtgtaatgatccttttattgttgagaacaatcctcatatacatgaccctga |
12618482 |
T |
|
| Q |
219 |
tgatgtc |
225 |
Q |
| |
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||||||| |
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| T |
12618481 |
tgatgtc |
12618475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 22 - 225
Target Start/End: Complemental strand, 16783588 - 16783385
Alignment:
| Q |
22 |
cttctaaccatatttagagacagttatatgattccaaatgatcatgattacaacatcatagaaagcaaccatttcttgttgtccaaaccatgcgacgaaa |
121 |
Q |
| |
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||||||| |||||||||||| || | ||||||||||||| || ||||| ||||||| ||||| |||||||||||||||| ||||||||||||||||||| |
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| T |
16783588 |
cttctaagcatatttagagatagctctatgattccaaataataatgatcacaacatgatagagagcaaccatttcttgtcttccaaaccatgcgacgaaa |
16783489 |
T |
|
| Q |
122 |
tctatgtggttggtgaaggtgagacacttaacacaattagtgataagtgtaatgatccttttattgttgagaataatcctcatattcatgaccctgatga |
221 |
Q |
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||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||| |||||||| |
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| T |
16783488 |
tctatgtagttggtgaaggtgagacactaaacacaattagtgataagtgtaatgaccctttcattgttgagaataatcctcatatacatgatcctgatga |
16783389 |
T |
|
| Q |
222 |
tgtc |
225 |
Q |
| |
|
|||| |
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|
| T |
16783388 |
tgtc |
16783385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 9e-20; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 116 - 225
Target Start/End: Complemental strand, 19024970 - 19024861
Alignment:
| Q |
116 |
acgaaatctatgtggttggtgaaggtgagacacttaacacaattagtgataagtgtaatgatccttttattgttgagaataatcctcatattcatgaccc |
215 |
Q |
| |
|
|||||||||| ||||| |||||||||||| |||| ||||| |||||||||||| | | |||||||||||| |||||||||||||||| || ||||| |
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| T |
19024970 |
acgaaatctacgtggtatgtgaaggtgagatgcttagcacaaatagtgataagtgcgacggcccttttattgttaagaataatcctcatatacacgaccc |
19024871 |
T |
|
| Q |
216 |
tgatgatgtc |
225 |
Q |
| |
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|||||||||| |
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|
| T |
19024870 |
tgatgatgtc |
19024861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 116 - 225
Target Start/End: Original strand, 20729666 - 20729775
Alignment:
| Q |
116 |
acgaaatctatgtggttggtgaaggtgagacacttaacacaattagtgataagtgtaatgatccttttattgttgagaataatcctcatattcatgaccc |
215 |
Q |
| |
|
|||||||||| ||||| |||||||||||| |||| ||||| |||||||||||| | | |||||||||||| |||||||||||||||| || ||||| |
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|
| T |
20729666 |
acgaaatctacgtggtatgtgaaggtgagatgcttagcacaaatagtgataagtgcgacggcccttttattgttaagaataatcctcatatacacgaccc |
20729765 |
T |
|
| Q |
216 |
tgatgatgtc |
225 |
Q |
| |
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|||||||||| |
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|
| T |
20729766 |
tgatgatgtc |
20729775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 224
Target Start/End: Complemental strand, 42240270 - 42240170
Alignment:
| Q |
124 |
tatgtggttggtgaaggtgagacacttaacacaattagtgataagtgtaatgatccttttattgttgagaataatcctcatattcatgaccctgatgatg |
223 |
Q |
| |
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||||||||| ||||||| ||||| ||| | ||||| ||||| || ||| |||||| |||||||| || | ||||| |||||||||||||| ||||||| |
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| T |
42240270 |
tatgtggttcgtgaaggagagactcttcatacaataagtgaaaaatgtggtgatccatttattgtagaagagaatccacatattcatgacccagatgatg |
42240171 |
T |
|
| Q |
224 |
t |
224 |
Q |
| |
|
| |
|
|
| T |
42240170 |
t |
42240170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 224
Target Start/End: Original strand, 26303227 - 26303309
Alignment:
| Q |
142 |
gagacacttaacacaattagtgataagtgtaatgatccttttattgttgagaataatcctcatattcatgaccctgatgatgt |
224 |
Q |
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||||||||| | ||||| ||||| |||||| |||||||| ||||||||| | ||||| ||||||||||| ||||||||||| |
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| T |
26303227 |
gagacacttcaaacaataagtgaaaagtgtggtgatccttatattgttgaagagaatccacatattcatgatcctgatgatgt |
26303309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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