View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17325_low_24 (Length: 232)
Name: NF17325_low_24
Description: NF17325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17325_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 130 - 216
Target Start/End: Complemental strand, 1354549 - 1354463
Alignment:
| Q |
130 |
ctattcttcctcttcaaacttatatataattaatgaatatagaaaattcaaacatttgatttaaaacctcgtgcgcttgcaaaatat |
216 |
Q |
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| T |
1354549 |
ctattcttcctcttcaaacttatatataattaatgaatatagaaaattcaaacatttgatttaaaacctcgtgcgcttgcaaaatat |
1354463 |
T |
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Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 15 - 91
Target Start/End: Complemental strand, 1354664 - 1354588
Alignment:
| Q |
15 |
tatgaacataaatagaccatgccaaatgtatgcttaaaacaaacttagcaggccagaaacggtattccaatgttgac |
91 |
Q |
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| T |
1354664 |
tatgaacataaatagaccatgccaaatgtatgcataaaacaaacttagcaggccagaaacggtattccaatgttgac |
1354588 |
T |
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