View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17325_low_3 (Length: 482)
Name: NF17325_low_3
Description: NF17325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17325_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 16 - 467
Target Start/End: Original strand, 41743863 - 41744317
Alignment:
| Q |
16 |
atgcgaccgtgatttaaaaccttaattagtcttaaatttattaattttcacaatcatcttttctatttctatgtatatat---aactataatgtgaacaa |
112 |
Q |
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| T |
41743863 |
atgctaccgtgatttaaaaccttaattagtcttaaatttattaattttcacaatcatcttttctatttctatgtatatattataactctaatgtgaacaa |
41743962 |
T |
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| Q |
113 |
tgcatattccattatttcagtctatgaatcagagttggcaccagatgaatacaaagaaaatgcaagacaacatccaagagcgaatccagtaatatccgag |
212 |
Q |
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| T |
41743963 |
tgcatattccattatttcagtctatgaatcagagttggcaccagatgaatacaaagaaaatgcaagacaacatccaagagcgaatccagtaatatccgag |
41744062 |
T |
|
| Q |
213 |
aagcgcgttttgaagatagtgaaaccaggagagcaagatcaagaaaatgcacttagtcctatcaagtccccaacaacaagaacaacatttcctcaacttg |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41744063 |
aagcgcgttttgaagatagtgaaaccaggagagcaagatcaagaaaatgcacttagtcctatcaagtccccaacaacaagaacaacatttcctcaacttg |
41744162 |
T |
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| Q |
313 |
caccaataactacaaatagttcaaatcagaacatgacaatgactaatcagaaaccgacactatccaacgttgaagaatcaaatgcatcatctcattctgc |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
41744163 |
caccaataactacaaatagttcaaatcagaacatgacaatgactaatcagaaaccaacactatccaacgttgaaggatcaaatgcatcatctcattctgc |
41744262 |
T |
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| Q |
413 |
accctcaaaatatggtgttggttctataacccctgttgctcctcttagttcatca |
467 |
Q |
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| T |
41744263 |
accctcaaaatatggtgtttgttctataacccctgttgctcctcttagttcatca |
41744317 |
T |
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