View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17325_low_4 (Length: 462)

Name: NF17325_low_4
Description: NF17325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17325_low_4
NF17325_low_4
[»] chr4 (2 HSPs)
chr4 (1-443)||(10406240-10406694)
chr4 (190-319)||(43859954-43860083)
[»] chr1 (4 HSPs)
chr1 (109-445)||(37501895-37502233)
chr1 (109-437)||(33928766-33929100)
chr1 (109-187)||(7504460-7504538)
chr1 (109-237)||(12975719-12975848)
[»] chr5 (1 HSPs)
chr5 (109-353)||(3548883-3549129)
[»] chr3 (3 HSPs)
chr3 (215-440)||(34545760-34545986)
chr3 (237-435)||(32925537-32925737)
chr3 (195-413)||(28681747-28681959)
[»] chr7 (1 HSPs)
chr7 (197-282)||(18702884-18702970)
[»] chr2 (1 HSPs)
chr2 (270-438)||(36284302-36284473)
[»] chr8 (4 HSPs)
chr8 (205-368)||(43190156-43190320)
chr8 (309-445)||(42347014-42347147)
chr8 (237-278)||(32331704-32331745)
chr8 (109-181)||(32331762-32331834)


Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 443
Target Start/End: Complemental strand, 10406694 - 10406240
Alignment:
Q  1 tggaaataccacactccttatccaaatacgtatgaatgagttccaacaggattgcatattaatgaagtttcaacactttctttgacacta---------- 90  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||              
T  10406694 tggaaataccacactccttatccaaatacatatgaatgagttccaagaggattgcatattgatgaagtttcgacactttctttgacactaaatgcactac 10406595  T
Q  91 -tgaagagagtcnnnnnnncaaaccagtttcttataaccaacctctcatcaaagtttaatttcaatcataaatacatgaatttatgcatgcaaaata-tg 188  Q
     |||||||||||       ||||||||||||||||||||||||||||| |||||||||||  ||||||||||  ||||||||||||||||||||||| ||    
T  10406594 atgaagagagtcagaaaaacaaaccagtttcttataaccaacctctcagcaaagtttaatcccaatcataaaggcatgaatttatgcatgcaaaatactg 10406495  T
Q  189 tacaaccccacactgccatataagaaaaattgaaagtttcactcaaaatcctaaccaatccaccttatcttgctttacctgggttagttaaagcattgtc 288  Q
    | |||||  ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  10406494 ttcaacctgacactgccatagaaggaaaattgaaagtttcactcaaaatcctaaccaatccaccatatcttgctttatctgggttagttaaagcattgtc 10406395  T
Q  289 atctatattaagagtcattgtatcattatcaccatgctgccagcatacttcatgaatggacctaattaatgcggttgaaatagtattctcgaatattcgt 388  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10406394 atctacattaagagtcattgtatcattatcaccatgctgccagcatacttcatgaatggacctaattaatgcggttgaaatagtattctcgaatattcgt 10406295  T
Q  389 tgtgaaacttacaattgtgcataaacagttgaaaatgtagttgagactattggtt 443  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  10406294 tgtgaaacttacaattgtgcataaacatttgaaaatgtagttgagactattggtt 10406240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 190 - 319
Target Start/End: Original strand, 43859954 - 43860083
Alignment:
Q  190 acaaccccacactgccatataagaaaaattgaaagtttcactcaaaat-cctaaccaatccaccttatcttgctttacctgggttagttaaagcattgtc 288  Q
    |||| |||||||| ||| |||||| |||||||||||| |  ||||||| ||||| ||||||||| ||  ||||||| || ||||||||||||||  || |    
T  43859954 acaaacccacactaccacataagacaaattgaaagttgccttcaaaattcctaatcaatccaccatagtttgctttccc-gggttagttaaagcgctgcc 43860052  T
Q  289 atctatattaagagtcattgtatcattatca 319  Q
    ||||| ||||| |  ||||||||||||||||    
T  43860053 atctacattaaaaaccattgtatcattatca 43860083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 99; Significance: 1e-48; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 109 - 445
Target Start/End: Complemental strand, 37502233 - 37501895
Alignment:
Q  109 caaaccagtttcttataaccaacctctcatcaaagtttaatttcaatcataaatacatgaatttatgcatgcaaaatat-gtacaaccccacactgccat 207  Q
    ||||||| |||||||||| || |||| |||||||| ||||| ||||||||||   |||||||||   |||||||||||| |  ||||||| |||| ||||    
T  37502233 caaaccaatttcttataatcagcctcccatcaaagcttaatctcaatcataagggcatgaatttcaacatgcaaaatattgggcaaccccgcactaccat 37502134  T
Q  208 ataagaaaaattgaaagtttcactcaaaatc-ctaaccaatccaccttatcttgctttacctgggttagttaaagcattgtcatctatattaagagtcat 306  Q
    | ||   ||||||||| ||||  |||||||  ||||| |||||||  |||| | |||||| ||||||||| ||||  |||||||||| |||||||  |||    
T  37502133 aaaatgcaaattgaaattttccttcaaaatttctaacgaatccactatatcctactttacttgggttagtcaaagtgttgtcatctacattaagaaccat 37502034  T
Q  307 tgtatcattatcaccatgctgccagcatacttcatgaatggacctaattaatgcggttgaaatagtattctcgaatattcgttgtgaaacttacaattgt 406  Q
    |||||||||||||||||||| | | |||||||||||| ||| ||||| |||||||||| ||||| |||| | ||||   ||||||||||||| ||||||     
T  37502033 tgtatcattatcaccatgctactaacatacttcatgagtgggcctaactaatgcggttaaaataatattgttgaatgcccgttgtgaaacttgcaattgc 37501934  T
Q  407 gcataaacagttgaaaatgtagttgagactattggttgg 445  Q
     |||||||| |||||| | ||||||||||||||| ||||    
T  37501933 acataaacaattgaaactatagttgagactattgattgg 37501895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 109 - 437
Target Start/End: Complemental strand, 33929100 - 33928766
Alignment:
Q  109 caaaccagtttcttataaccaacctctcatcaaagtttaatttcaatcataaatacatgaatttatgcatgcaaaatat-gtacaaccccacactgccat 207  Q
    ||||| ||||| ||||||||| | || || ||||| |||||  |||||||||   | ||||||| |||||||| ||||| | ||||||||| ||| ||||    
T  33929100 caaactagttttttataaccagcttcccaacaaagcttaatcccaatcataagggcttgaatttctgcatgcagaatattggacaaccccaaactaccat 33929001  T
Q  208 ataagaaaaattgaaagtttcactcaaaat-cctaaccaat----ccaccttatcttgctttacctgggttagttaaagcattgtcatctatattaagag 302  Q
    | |||  ||||||||| |||  |||||||| |||||| |||    ||||| |||| ||||||||||||||||||||||||  || |||| | |||||||     
T  33929000 agaaggcaaattgaaaattttcctcaaaattcctaactaatatatccaccatatcctgctttacctgggttagttaaagcgctgccatccacattaagaa 33928901  T
Q  303 tcattgtatcattatcaccatgctgccagcatacttcatgaatggacctaattaatgcggttgaaatagtattctcgaatattcgttgtgaaacttacaa 402  Q
     ||||||||||||||||||||| ||||| |||||||||||| ||| ||||| ||||||||||||||||||||| ||||||   |  |||||||||| |||    
T  33928900 ccattgtatcattatcaccatgttgccaacatacttcatgagtgggcctaactaatgcggttgaaatagtattgtcgaatgccctctgtgaaacttgcaa 33928801  T
Q  403 ttgtgcataaacagttgaaaatgtagttgagacta 437  Q
    ||| | |||||| |  |||| ||||||||||||||    
T  33928800 ttgcgtataaactgcagaaattgtagttgagacta 33928766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 187
Target Start/End: Complemental strand, 7504538 - 7504460
Alignment:
Q  109 caaaccagtttcttataaccaacctctcatcaaagtttaatttcaatcataaatacatgaatttatgcatgcaaaatat 187  Q
    ||||||| ||||||||||| | |||| |||||||| |||||  |||||||||   ||||||||| |||| |||||||||    
T  7504538 caaaccaatttcttataactagcctcccatcaaagcttaatcccaatcataagggcatgaatttttgcacgcaaaatat 7504460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 237
Target Start/End: Original strand, 12975719 - 12975848
Alignment:
Q  109 caaaccagtttcttataaccaacctctcatcaaagtttaatttcaatcataaatacatgaatttatgcatgcaaaata-tgtacaaccccacactgccat 207  Q
    ||||| ||||||||||||||| | || || ||||| |||||  |||||||||   ||||||||| |||||||| |||| || ||||| ||||||| ||||    
T  12975719 caaactagtttcttataaccagcttcccaacaaagcttaatcccaatcataagggcatgaatttctgcatgcagaatattggacaactccacactaccat 12975818  T
Q  208 ataagaaaaattgaaagtttcactcaaaat 237  Q
    | ||   ||||||||| |||  ||||||||    
T  12975819 agaaagcaaattgaaatttttcctcaaaat 12975848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 109 - 353
Target Start/End: Complemental strand, 3549129 - 3548883
Alignment:
Q  109 caaaccagtttcttataaccaacctctcatcaaagtttaatttcaatcataaatacatgaatttatgcatgcaaaatat-gtacaaccccacactgccat 207  Q
    ||||| ||||||||||||| | |||| || ||||| |||||  |||||||||  |||||||||| |||||||||||||| | |||| |  ||||| ||||    
T  3549129 caaactagtttcttataacgagcctcccagcaaagcttaatcccaatcataagaacatgaatttctgcatgcaaaatattggacaatcaaacactaccat 3549030  T
Q  208 ataagaaaaattgaaagtttcactcaaaat-cctaaccaatccaccttatcttgctttacctgggttagttaaagcattgtcatctatattaagagtcat 306  Q
    | |||  ||||||||| |||| |||||||| ||||||||||||||| ||||||||||||||| ||||||||||| | ||| |||||| |||||||  |||    
T  3549029 agaaggcaaattgaaattttccctcaaaattcctaaccaatccaccatatcttgctttacctaggttagttaaaacgttgccatctacattaagaaccat 3548930  T
Q  307 tgtatcattatcaccatgctgccagcatacttcatgaatggacctaa 353  Q
    |||| ||||||  ||||| ||||| |||||||||||| ||| |||||    
T  3548929 tgtaccattatttccatgttgccaacatacttcatgagtgggcctaa 3548883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 215 - 440
Target Start/End: Original strand, 34545760 - 34545986
Alignment:
Q  215 aaattgaaagtttcactcaaaat-cctaaccaatccaccttatcttgctttacctgggttagttaaagcattgtcatctatattaagagtcattgtatca 313  Q
    |||||| || |||| |||||||| ||||||||||||||| |||| || ||||||| |||||||||||||  |  ||||||  || | |  || || ||||    
T  34545760 aaattgcaattttccctcaaaattcctaaccaatccaccatatcatgttttacctaggttagttaaagcgctaccatctacgttgaaaaccagtgaatca 34545859  T
Q  314 ttatcaccatgctgccagcatacttcatgaatggacctaattaatgcggttgaaatagtattctcgaatattcgttgtgaaacttacaattgtgcataaa 413  Q
    ||||||||||| |||| | ||||||||||| ||| ||||| || ||||||||||||| |||| |||||| |  | || ||||||| |||||| |||| ||    
T  34545860 ttatcaccatgttgccggtatacttcatgagtgggcctaactagtgcggttgaaataatattgtcgaatgtcagctgcgaaacttgcaattgcgcatgaa 34545959  T
Q  414 cagttgaaaatgtagttgagactattg 440  Q
    ||| ||||| |||||||||||||||||    
T  34545960 cagctgaaattgtagttgagactattg 34545986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 237 - 435
Target Start/End: Original strand, 32925537 - 32925737
Alignment:
Q  237 tcctaaccaatccaccttatcttgctttacctgggttagttaaagcattgtcatctatattaagagtcattgtatcattatcaccatgctgccagcatac 336  Q
    |||||||||||||||| |||||| |||||  |||||||||||||||     |||| | |||||||  |||||||||||||||| ||   ||||| ||| |    
T  32925537 tcctaaccaatccaccgtatcttactttatttgggttagttaaagcgcaaccatccacattaagaaccattgtatcattatcatcactttgccaacatgc 32925636  T
Q  337 ttcatgaatggacctaattaatgcggttgaa--atagtattctcgaatattcgttgtgaaacttacaattgtgcataaacagttgaaaatgtagttgaga 434  Q
    ||||||| ||| ||||| |||||||||||||  |||||||| ||||||   || | | |||||| |||||| |||||||||| ||||| |||||||||||    
T  32925637 ttcatgagtgggcctaactaatgcggttgaaatatagtattgtcgaatgcccgctctaaaacttgcaattgcgcataaacagctgaaactgtagttgaga 32925736  T
Q  435 c 435  Q
    |    
T  32925737 c 32925737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 195 - 413
Target Start/End: Complemental strand, 28681959 - 28681747
Alignment:
Q  195 cccacactgccatataagaaaaattgaaagtttcactcaaaat-cctaaccaatccaccttatcttgctttacctgggttagttaaagcattgtcatcta 293  Q
    |||||||| ||||| |||  ||||||||| || |  ||||||| ||||| ||||||| | || |||| |||||||||||||||||||||| |  |||| |    
T  28681959 cccacactaccatacaaggcaaattgaaaattgccatcaaaattcctaatcaatccatcatagcttgttttacctgggttagttaaagcaataccatcca 28681860  T
Q  294 tattaagagtcattgtatcattatcaccatgctgccagc-atacttcatgaatggacctaattaatgcggttgaaatagtattctcgaatattcgttgtg 392  Q
     |||||||        | |||||||||| |||||| ||| ||||||||||||||  ||||| ||| | |||||||| | |||| ||||||  ||  ||      
T  28681859 cattaaga--------accattatcaccgtgctgctagcaatacttcatgaatgatcctaactaaagtggttgaaacaatattgtcgaatgctcaatgga 28681768  T
Q  393 aaacttacaattgtgcataaa 413  Q
    ||||| |||||||||||||||    
T  28681767 aaactcacaattgtgcataaa 28681747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 197 - 282
Target Start/End: Original strand, 18702884 - 18702970
Alignment:
Q  197 cacactgccatataagaaaaattgaaagtttcactcaaaatcc-taaccaatccaccttatcttgctttacctgggttagttaaagc 282  Q
    |||||| ||||| |||| ||||||||| ||||  ||||||| | ||||||||||||| ||||||||||||||||| |||||||||||    
T  18702884 cacactaccatagaagataaattgaaattttccttcaaaattcataaccaatccaccatatcttgctttacctggattagttaaagc 18702970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 270 - 438
Target Start/End: Complemental strand, 36284473 - 36284302
Alignment:
Q  270 ggttagttaaagcattgtcatctatattaagagtcattgtatcatt---atcaccatgctgccagcatacttcatgaatggacctaattaatgcggttga 366  Q
    |||||||||||||  |  |||| |||||||||  |||| |||||||   ||||||||| ||||| ||||||||| || ||||||||| ||| ||||||||    
T  36284473 ggttagttaaagcgctaacatccatattaagaaccattatatcattatcatcaccatgttgccaacatacttcacgagtggacctaactaaagcggttga 36284374  T
Q  367 aatagtattctcgaatattcgttgtgaaacttacaattgtgcataaacagttgaaaatgtagttgagactat 438  Q
    || | |||| || ||| | || | |||||||| |||||||||| ||| || |||||  ||| ||||||||||    
T  36284373 aacaatattgtcaaatgtccgctatgaaacttgcaattgtgcaaaaatagatgaaaccgtatttgagactat 36284302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 205 - 368
Target Start/End: Complemental strand, 43190320 - 43190156
Alignment:
Q  205 catataagaaaaattgaaagtttcactcaaaat-cctaaccaatccaccttatcttgctttacctgggttagttaaagcattgtcatctatattaagagt 303  Q
    ||||||||  |||||||||||||  |||||||| ||||||||||||||| || | | |||||||| ||||| |||||| |||||| || | |||||||      
T  43190320 catataaggcaaattgaaagtttacctcaaaattcctaaccaatccaccataacatactttacctaggttacttaaagtattgtcgtccacattaagaac 43190221  T
Q  304 cattgtatcattatcaccatgctgccagcatacttcatgaatggacctaattaatgcggttgaaa 368  Q
     | || |||||||||||  || ||||| ||| |||||||| |||  |||| ||| |||| |||||    
T  43190220 aagtgcatcattatcactgtgttgccaacatgcttcatgagtgggtctaactaaagcggctgaaa 43190156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 445
Target Start/End: Original strand, 42347014 - 42347147
Alignment:
Q  309 tatcattatcaccatgctgccagcatacttcatgaatggacctaattaatgcggttgaaatagtattctcgaatattcgttgtgaaacttacaattgtgc 408  Q
    |||||||||||||||||||||| |||||||||||| ||| ||||| | |   |||||||| | |||| | |||| | |  |||||||||| |||||| |     
T  42347014 tatcattatcaccatgctgccaacatacttcatgagtgggcctaactcaactggttgaaacaatattgttgaatgtgcactgtgaaacttgcaattgcga 42347113  T
Q  409 ataaacagttgaaaatgtagttgagactattggttgg 445  Q
    ||||||   |||||  ||||||||||||||| |||||    
T  42347114 ataaac---tgaaaccgtagttgagactattagttgg 42347147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 278
Target Start/End: Complemental strand, 32331745 - 32331704
Alignment:
Q  237 tcctaaccaatccaccttatcttgctttacctgggttagtta 278  Q
    ||||||| |||||||| |||| ||||||||||||||||||||    
T  32331745 tcctaactaatccaccatatcgtgctttacctgggttagtta 32331704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 181
Target Start/End: Complemental strand, 32331834 - 32331762
Alignment:
Q  109 caaaccagtttcttataaccaacctctcatcaaagtttaatttcaatcataaatacatgaatttatgcatgca 181  Q
    ||||||||||||||||||||| | || || ||||| |||||  |||||||||   ||||||||| ||||||||    
T  32331834 caaaccagtttcttataaccagcttcccagcaaagcttaatcccaatcataagggcatgaatttctgcatgca 32331762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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