View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17325_low_7 (Length: 408)

Name: NF17325_low_7
Description: NF17325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17325_low_7
NF17325_low_7
[»] chr8 (5 HSPs)
chr8 (53-402)||(34389552-34389913)
chr8 (206-396)||(34866602-34866804)
chr8 (305-353)||(9519055-9519103)
chr8 (299-353)||(10551736-10551790)
chr8 (301-353)||(37987530-37987582)
[»] chr1 (5 HSPs)
chr1 (53-402)||(41919642-41920004)
chr1 (217-402)||(24685048-24685244)
chr1 (302-353)||(31586300-31586351)
chr1 (315-353)||(46693493-46693531)
chr1 (309-349)||(42373538-42373578)
[»] chr4 (6 HSPs)
chr4 (191-402)||(30963762-30963985)
chr4 (54-95)||(30963714-30963755)
chr4 (305-353)||(31051250-31051298)
chr4 (301-353)||(38929125-38929177)
chr4 (305-353)||(16501186-16501234)
chr4 (315-353)||(46699528-46699566)
[»] chr7 (6 HSPs)
chr7 (60-402)||(38305418-38305782)
chr7 (247-402)||(3420198-3420365)
chr7 (306-354)||(38484990-38485038)
chr7 (305-349)||(37792745-37792789)
chr7 (315-353)||(12480298-12480336)
chr7 (271-353)||(47326469-47326551)
[»] chr6 (2 HSPs)
chr6 (156-401)||(16510828-16511084)
chr6 (305-349)||(12793551-12793595)
[»] chr3 (5 HSPs)
chr3 (226-402)||(19175838-19176025)
chr3 (270-353)||(1653515-1653598)
chr3 (231-353)||(20611145-20611267)
chr3 (316-396)||(30935941-30936029)
chr3 (355-396)||(25595153-25595194)
[»] chr2 (4 HSPs)
chr2 (299-353)||(31902983-31903037)
chr2 (301-353)||(2062252-2062304)
chr2 (231-353)||(39339430-39339552)
chr2 (306-353)||(29486398-29486445)
[»] chr5 (1 HSPs)
chr5 (301-345)||(697716-697760)


Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 53 - 402
Target Start/End: Complemental strand, 34389913 - 34389552
Alignment:
Q  53 tttgtacgtttgcttctccattggccaatggtggtggttgtttatgttggatttgggcgtgggttgttatcggaggatttgggctgatttgcggtgcttt 152  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  34389913 tttgtacgtttgcttctccattggccaatggtagtggttgtttatggtggatttgggcgtgggttgttatcggaggatttgggctgatttgcagtgcttt 34389814  T
Q  153 ggggtggtggtggtgatgtggtgtgaggaggtcgaagatttcgggattcaggaagtgttattcagatctgccatttttgctccaccattggttctctttt 252  Q
    ||||||||||||||||||||||||||||||||| | | |||| |||| | |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  34389813 ggggtggtggtggtgatgtggtgtgaggaggtcaagggtttcaggatccgggaagtgttattcagatctgccgtttttgctccaccattggttctctttt 34389714  T
Q  253 actacggc-acgaacacattctccttgtcacaggcagccgctttgtcatgatctgggttgtgcttccgcttcaaaccggcgtcgctgcccgtgttttgtt 351  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34389713 actacggcgacgaacacattctccttgtcacaggcagccgctttgtcatgatctgggttgtgcttccgcttcaaaccggcgtcgctgcccgtgttttgtt 34389614  T
Q  352 gt-----------ctcctctagatttatgtttgtgttgttgcttgtttcttggtgatgatgt 402  Q
    ||           ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  34389613 gtggaatttcgtcctcctctagatttatgtttgtgttgttgcttgtttcttggtgaggatgt 34389552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 206 - 396
Target Start/End: Complemental strand, 34866804 - 34866602
Alignment:
Q  206 agtgttattcagatctgccatttttgctccaccattggttctcttttactacggc-acgaacacattctccttgtcacaggcagccgctttgtcatgatc 304  Q
    |||||| |||| ||| ||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||  |||| || | |||| |    
T  34866804 agtgttgttcaaatccgccatttttgctccaccattgattctcttttactacggcgacgaaaacattctccttgtcacaggcgaccgcctttttatgacc 34866705  T
Q  305 tgggttgtgcttccgcttcaaaccggcgtcgctgcccgtgttttgttgt-----------ctcctctagatttatgtttgtgttgttgcttgtttcttgg 393  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||            ||||||| |||||||||||||||||||||||||||||||    
T  34866704 tgggttgtggttccgcttcaaaccggcgtcgctgcccgtgttttgttgttggatttcgtcttcctctaaatttatgtttgtgttgttgcttgtttcttgg 34866605  T
Q  394 tga 396  Q
    |||    
T  34866604 tga 34866602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 305 - 353
Target Start/End: Original strand, 9519055 - 9519103
Alignment:
Q  305 tgggttgtgcttccgcttcaaaccggcgtcgctgcccgtgttttgttgt 353  Q
    ||||||||| | |||||||||||| ||||||||||||||||||||||||    
T  9519055 tgggttgtgttcccgcttcaaaccagcgtcgctgcccgtgttttgttgt 9519103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 353
Target Start/End: Original strand, 10551736 - 10551790
Alignment:
Q  299 atgatctgggttgtgcttccgcttcaaaccggcgtcgctgcccgtgttttgttgt 353  Q
    |||||| |||| ||| |||||||||||| ||||||||||||||||| ||||||||    
T  10551736 atgatcggggtcgtgtttccgcttcaaatcggcgtcgctgcccgtgctttgttgt 10551790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 353
Target Start/End: Complemental strand, 37987582 - 37987530
Alignment:
Q  301 gatctgggttgtgcttccgcttcaaaccggcgtcgctgcccgtgttttgttgt 353  Q
    ||||| ||||| | |||||||||| ||||||||||||||||||||| ||||||    
T  37987582 gatctaggttgagtttccgcttcagaccggcgtcgctgcccgtgttatgttgt 37987530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 53 - 402
Target Start/End: Original strand, 41919642 - 41920004
Alignment:
Q  53 tttgtacgtttgcttctccattggccaatggtggtggttgtttatgttggatttgggcgtgggttgttatcggaggatttgggctgatttgcggtgcttt 152  Q
    ||||||| |||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  41919642 tttgtacatttgtttctccattggtcaatggtggtggttgtttatggtggatttgggcgtgggttgttatcggaggatttgggctggtttgcggtgcttt 41919741  T
Q  153 -ggggtggtggtggtgatgtggtgtgaggaggtcgaagatttcgggattcaggaagtgttattcagatctgccatttttgctccaccattggttctcttt 251  Q
     ||||||||||||||||||||||||||||||||| | | ||||||||| | | ||||||| |||||||| ||| ||||||||||||||||||||||||||    
T  41919742 gggggtggtggtggtgatgtggtgtgaggaggtcaagggtttcgggatccggtaagtgttgttcagatccgccgtttttgctccaccattggttctcttt 41919841  T
Q  252 tactacggc-acgaacacattctccttgtcacaggcagccgctttgtcatgatctgggttgtgcttccgcttcaaaccggcgtcgctgcccgtgttttgt 350  Q
    ||||||||| |||||||||||||||||||||||||| |||||  | | ||||||||||||||| |||||||||||||| |||||| ||||||||||||||    
T  41919842 tactacggcaacgaacacattctccttgtcacaggctgccgccatttaatgatctgggttgtggttccgcttcaaaccagcgtcgttgcccgtgttttgt 41919941  T
Q  351 tgt-----------ctcctctagatttatgtttgtgttgttgcttgtttcttggtgatgatgt 402  Q
    |||            |||||||||||||||||||||||||||||||||||||||||| |||||    
T  41919942 tgtgggatttcatcttcctctagatttatgtttgtgttgttgcttgtttcttggtgaggatgt 41920004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 217 - 402
Target Start/End: Complemental strand, 24685244 - 24685048
Alignment:
Q  217 gatctgccatttttgctccaccattggttctcttttactacggc-acgaacacattctccttgtcacaggcagcc-gctttgtcatgatctgggttgtgc 314  Q
    |||| |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||| ||||| | ||||| |||||||||     
T  24685244 gatccgccatttttgctccaccattggttct-ttttactacggcgacgaacacattctccttgtcacaggcggccagcttttt-atgatatgggttgtgg 24685147  T
Q  315 ttccgcttcaaaccggcgtcgctgcccgtgttttg----------ttgtctc-ctctagatttatgtttgtgttgttgcttgtttcttggtgatgatgt 402  Q
    ||| |||||||||||||||||||||||||||||||          ||||||| || ||||||||||||||||||||||||||||||||||||| |||||    
T  24685146 ttctgcttcaaaccggcgtcgctgcccgtgttttgttgttgaattttgtctctctttagatttatgtttgtgttgttgcttgtttcttggtgaggatgt 24685048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 302 - 353
Target Start/End: Complemental strand, 31586351 - 31586300
Alignment:
Q  302 atctgggttgtgcttccgcttcaaaccggcgtcgctgcccgtgttttgttgt 353  Q
    |||||||| ||| | |||||||| ||||||||||||||||||||||||||||    
T  31586351 atctgggtcgtgttcccgcttcagaccggcgtcgctgcccgtgttttgttgt 31586300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 353
Target Start/End: Complemental strand, 46693531 - 46693493
Alignment:
Q  315 ttccgcttcaaaccggcgtcgctgcccgtgttttgttgt 353  Q
    |||||||||| ||||||||||||||||||||| ||||||    
T  46693531 ttccgcttcagaccggcgtcgctgcccgtgttctgttgt 46693493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 349
Target Start/End: Original strand, 42373538 - 42373578
Alignment:
Q  309 ttgtgcttccgcttcaaaccggcgtcgctgcccgtgttttg 349  Q
    ||||| |||||||||||||||| |||| |||||||||||||    
T  42373538 ttgtgattccgcttcaaaccggtgtcgttgcccgtgttttg 42373578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 90; Significance: 2e-43; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 191 - 402
Target Start/End: Original strand, 30963762 - 30963985
Alignment:
Q  191 tttcgggattcaggaagtgttattcagatctgccatttttgctccaccattggttctcttttactacggc-acgaacacattctccttgtcacaggcagc 289  Q
    ||||| ||||||||||||| | |||||||| ||| ||||| ||||||||||||||||||||||||||  | |||||| |||||||||||||||||||  |    
T  30963762 tttcgcgattcaggaagtgctgttcagatccgccgttttttctccaccattggttctcttttactacaacgacgaacgcattctccttgtcacaggcgac 30963861  T
Q  290 cgctttgtcatgatctgggttgtgcttccgcttcaaaccggcgtcgctgcccgtgttttgttgt-----------ctcctctagatttatgtttgtgttg 378  Q
    |   || | ||||||||||||||| |||| |||||||||||||||| |||||||||||||| ||            ||||||||||||||||||||||||    
T  30963862 catctttttatgatctgggttgtggttccacttcaaaccggcgtcgatgcccgtgttttgtggttggatttcgtcttcctctagatttatgtttgtgttg 30963961  T
Q  379 ttgcttgtttcttggtgatgatgt 402  Q
    |||||||||||||||||| |||||    
T  30963962 ttgcttgtttcttggtgaggatgt 30963985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 95
Target Start/End: Original strand, 30963714 - 30963755
Alignment:
Q  54 ttgtacgtttgcttctccattggccaatggtggtggttgttt 95  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  30963714 ttgtacgtttgcttcttcattggccaatggtggtggttgttt 30963755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 305 - 353
Target Start/End: Complemental strand, 31051298 - 31051250
Alignment:
Q  305 tgggttgtgcttccgcttcaaaccggcgtcgctgcccgtgttttgttgt 353  Q
    |||||||||  ||||||||| ||||||||||||||||||||||||||||    
T  31051298 tgggttgtgtgtccgcttcagaccggcgtcgctgcccgtgttttgttgt 31051250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 301 - 353
Target Start/End: Original strand, 38929125 - 38929177
Alignment:
Q  301 gatctgggttgtgcttccgcttcaaaccggcgtcgctgcccgtgttttgttgt 353  Q
    ||||| ||||||| |||||||||| ||||||||| ||||||||||||||||||    
T  38929125 gatctaggttgtgtttccgcttcagaccggcgtcactgcccgtgttttgttgt 38929177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 353
Target Start/End: Original strand, 16501186 - 16501234
Alignment:
Q  305 tgggttgtgcttccgcttcaaaccggcgtcgctgcccgtgttttgttgt 353  Q
    ||||||||| |||| |||||||||||||||||||||| |||| ||||||    
T  16501186 tgggttgtgattccacttcaaaccggcgtcgctgcccatgttgtgttgt 16501234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 353
Target Start/End: Complemental strand, 46699566 - 46699528
Alignment:
Q  315 ttccgcttcaaaccggcgtcgctgcccgtgttttgttgt 353  Q
    |||||||||||| |||||||||||||||||| |||||||    
T  46699566 ttccgcttcaaatcggcgtcgctgcccgtgtattgttgt 46699528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 88; Significance: 3e-42; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 60 - 402
Target Start/End: Original strand, 38305418 - 38305782
Alignment:
Q  60 gtttgcttctccattggccaatggtggtggttgtttatgttggatttgggcgtgggttgttatcggaggatttgggctgatttgcggtgctttggggtg- 158  Q
    |||||||| ||||||||||||| |||||||||||||    ||| || |||||||||||||| | ||||| |||||||||  || |||||||||||||||     
T  38305418 gtttgcttttccattggccaattgtggtggttgtttccaatggtttcgggcgtgggttgtttttggaggttttgggctggattacggtgctttggggtga 38305517  T
Q  159 ---------gtggtggtgatgtggtgtgaggaggtcgaagatttcgggattcaggaagtgttattcagatctgccatttttgctccaccattggttctct 249  Q
             || |||  |  |||||| |||||||||  |  |||||||||    |||||| | |||| ||| ||| |||||||||||||||||| |||||    
T  38305518 gctgtttaggttgtgtggtggtggtgagaggaggtcacatttttcgggatctgagaagtgctgttcatatccgccgtttttgctccaccattggctctct 38305617  T
Q  250 tttactacggc-acgaacacattctccttgtcacaggcagccgctttgtcatgatctgggttgtgcttccgcttcaaaccggcgtcgctgcccgtgtttt 348  Q
    ||||||||||| |||||| ||||||| ||||||||| | ||||| ||   ||||| ||||||||| ||||||||||||||||||| |||||| |||||||    
T  38305618 tttactacggcgacgaacgcattctcgttgtcacagtcggccgcctttaaatgatatgggttgtggttccgcttcaaaccggcgttgctgcctgtgtttt 38305717  T
Q  349 gttgt-----------ctcctctagatttatgtttgtgttgttgcttgtttcttggtgatgatgt 402  Q
    |||||            ||||||||||| |||||||||||||||||||||||||||||| |||||    
T  38305718 gttgttggatttcgtcttcctctagattgatgtttgtgttgttgcttgtttcttggtgaggatgt 38305782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 247 - 402
Target Start/End: Complemental strand, 3420365 - 3420198
Alignment:
Q  247 tcttttactacggc-acgaacacattctccttgtcacaggcagccgctttgtcatgatctgggttgtgcttccgcttcaaaccggcgtcgctgcccgtgt 345  Q
    |||||||||||||| |||||| |||||||| ||| |||||   |||| || | ||||||| ||||||| ||||||||| ||||||||||||||| |||||    
T  3420365 tcttttactacggcgacgaacgcattctccctgttacaggagaccgcctttttatgatctaggttgtggttccgcttcgaaccggcgtcgctgctcgtgt 3420266  T
Q  346 tttgttgt-----------ctcctctagatttatgtttgtgttgttgcttgtttcttggtgatgatgt 402  Q
    ||||||||            ||||||| |||||||  ||||||||||||||||||||||||| |||||    
T  3420265 tttgttgtttggtttcgtcttcctctaaatttatgcatgtgttgttgcttgtttcttggtgaggatgt 3420198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 306 - 354
Target Start/End: Original strand, 38484990 - 38485038
Alignment:
Q  306 gggttgtgcttccgcttcaaaccggcgtcgctgcccgtgttttgttgtc 354  Q
    |||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  38484990 gggttgtgtttccgcttcaaaccggcgtcgctgcccatgttttgttgtc 38485038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 349
Target Start/End: Original strand, 37792745 - 37792789
Alignment:
Q  305 tgggttgtgcttccgcttcaaaccggcgtcgctgcccgtgttttg 349  Q
    ||||||||| ||||||||||||||||||||| || ||||||||||    
T  37792745 tgggttgtgtttccgcttcaaaccggcgtcgttgtccgtgttttg 37792789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 353
Target Start/End: Original strand, 12480298 - 12480336
Alignment:
Q  315 ttccgcttcaaaccggcgtcgctgcccgtgttttgttgt 353  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  12480298 ttccacttcaaaccggcgtcgctgctcgtgttttgttgt 12480336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 271 - 353
Target Start/End: Complemental strand, 47326551 - 47326469
Alignment:
Q  271 tctccttgtcacaggcagccgctttgtcatgatctgggttgtgcttccgcttcaaaccggcgtcgctgcccgtgttttgttgt 353  Q
    |||||||||||| ||| ||||| ||   ||||| | ||||||| || | ||||||| ||| ||||||||||||||||||||||    
T  47326551 tctccttgtcaccggcggccgcctttctatgatttcggttgtgttttcacttcaaatcggtgtcgctgcccgtgttttgttgt 47326469  T

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Target: chr6 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 156 - 401
Target Start/End: Complemental strand, 16511084 - 16510828
Alignment:
Q  156 gtggtggtggtgatgtggtgtgaggaggtcgaagatttcgggattcaggaagtgttattcagatctgccatttttgctccaccattggttctcttttact 255  Q
    ||||||||||||||||||| |||||||| |   | ||||||| | | ||||||| | |||||| | ||| ||||||||||||||||| ||||||||||||    
T  16511084 gtggtggtggtgatgtggt-tgaggaggacacgggtttcgggttccgggaagtgctgttcagaaccgccgtttttgctccaccattgtttctcttttact 16510986  T
Q  256 acggc-acgaacacattctccttgtcacaggcagccgctttgtcatgatctgggttgtgcttccgcttcaaaccggcgtcgctgcccgtgttttgttgt- 353  Q
    ||||  | ||||||||||||||||||||| ||  | || || | ||||| ||||||||| ||| ||||||||||||| |||||||||||||||||||||     
T  16510985 acggagatgaacacattctccttgtcacaagcgactgcctttttatgatatgggttgtggttctgcttcaaaccggcatcgctgcccgtgttttgttgtt 16510886  T
Q  354 ----------ctcctctagatttatgtttgtgttgttgcttgtttcttggtgatgatg 401  Q
               |||||||||||||||||||||||||||||||||||||||||| ||||    
T  16510885 ggatgtcgtcttcctctagatttatgtttgtgttgttgcttgtttcttggtgaggatg 16510828  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 349
Target Start/End: Original strand, 12793551 - 12793595
Alignment:
Q  305 tgggttgtgcttccgcttcaaaccggcgtcgctgcccgtgttttg 349  Q
    ||||||||| || |||||||||| ||||||| |||||||||||||    
T  12793551 tgggttgtgttttcgcttcaaactggcgtcgttgcccgtgttttg 12793595  T

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Target: chr3 (Bit Score: 74; Significance: 8e-34; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 226 - 402
Target Start/End: Original strand, 19175838 - 19176025
Alignment:
Q  226 tttttgctccaccattggttctcttttactacggc-acgaacacattctccttgtcacaggcagccgctttgtcatgatctgggttgtgcttccgcttca 324  Q
    |||||||||||||||||||||| |||||||||||| |||||  ||||||||||||||||||| || || || | ||||| ||||||||| |||| |||||    
T  19175838 tttttgctccaccattggttct-ttttactacggcgacgaatgcattctccttgtcacaggcggctgcctttttatgatatgggttgtggttcctcttca 19175936  T
Q  325 aaccggcgtcgctgcccgtgttttg----------ttgtct-cctctagatttatgtttgtgttgttgcttgtttcttggtgatgatgt 402  Q
    ||||||| |||||||||||||||||          |||||| ||| |||||||||||||||| |||||||||||||||||||| |||||    
T  19175937 aaccggcatcgctgcccgtgttttgttgttggattttgtctccctttagatttatgtttgtgctgttgcttgtttcttggtgaggatgt 19176025  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 270 - 353
Target Start/End: Complemental strand, 1653598 - 1653515
Alignment:
Q  270 ttctccttgtcacaggcagccgctttgtcatgatctgggttgtgcttccgcttcaaaccggcgtcgctgcccgtgttttgttgt 353  Q
    ||||||||||||| ||| ||  | |||| | ||||||||||||  || |||||||||||||||||| |||||||||||||||||    
T  1653598 ttctccttgtcactggcggcaaccttgttacgatctgggttgtcttttcgcttcaaaccggcgtcgatgcccgtgttttgttgt 1653515  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 231 - 353
Target Start/End: Original strand, 20611145 - 20611267
Alignment:
Q  231 gctccaccattggttctcttttactacggc-acgaacacattctccttgtcacaggcagccgctttgtcatgatctgggttgtgcttccgcttcaaaccg 329  Q
    ||||||||||||||||||||||||| || | |||||| | | ||||||||||  ||| ||||| ||   ||||| | |||||||||| | ||||||||||    
T  20611145 gctccaccattggttctcttttactccgccgacgaacgcct-ctccttgtcatcggcggccgcctttctatgattttggttgtgctttcacttcaaaccg 20611243  T
Q  330 gcgtcgctgcccgtgttttgttgt 353  Q
     ||||||||| |||||||||||||    
T  20611244 acgtcgctgctcgtgttttgttgt 20611267  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 316 - 396
Target Start/End: Complemental strand, 30936029 - 30935941
Alignment:
Q  316 tccgcttcaaaccggcgtcgctgcccgtgttttgttgtc--------tcctctagatttatgtttgtgttgttgcttgtttcttggtga 396  Q
    ||||| ||| ||||||||||||| ||||||||||||||         |||||||||||||||||| ||||||||  |||||||||||||    
T  30936029 tccgcctcagaccggcgtcgctgtccgtgttttgttgttgggtttcgtcctctagatttatgtttttgttgttgtctgtttcttggtga 30935941  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 355 - 396
Target Start/End: Complemental strand, 25595194 - 25595153
Alignment:
Q  355 tcctctagatttatgtttgtgttgttgcttgtttcttggtga 396  Q
    |||||||||||| | ||||||||| |||||||||||||||||    
T  25595194 tcctctagatttgtttttgtgttgctgcttgtttcttggtga 25595153  T

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Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 299 - 353
Target Start/End: Complemental strand, 31903037 - 31902983
Alignment:
Q  299 atgatctgggttgtgcttccgcttcaaaccggcgtcgctgcccgtgttttgttgt 353  Q
    ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||    
T  31903037 atgatctaggttgtgtttccgcttcaaaccggcgtcgctgcccgtgttttgttgt 31902983  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 301 - 353
Target Start/End: Original strand, 2062252 - 2062304
Alignment:
Q  301 gatctgggttgtgcttccgcttcaaaccggcgtcgctgcccgtgttttgttgt 353  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  2062252 gatctgggttgtgtttccgcttcagaccggcgtcgctgcccgtgttttgttgt 2062304  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 231 - 353
Target Start/End: Complemental strand, 39339552 - 39339430
Alignment:
Q  231 gctccaccattggttctcttttactacggc-acgaacacattctccttgtcacaggcagccgctttgtcatgatctgggttgtgcttccgcttcaaaccg 329  Q
    ||||||||||||||||||||||||| || | |||||| |  |||||||||||| ||| ||||| ||   ||||| | ||||||| || | ||||||||||    
T  39339552 gctccaccattggttctcttttactccgccgacgaacgc-ctctccttgtcaccggcggccgcctttctatgattttggttgtgttttcacttcaaaccg 39339454  T
Q  330 gcgtcgctgcccgtgttttgttgt 353  Q
     ||||||||| |||||||||||||    
T  39339453 acgtcgctgctcgtgttttgttgt 39339430  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 306 - 353
Target Start/End: Original strand, 29486398 - 29486445
Alignment:
Q  306 gggttgtgcttccgcttcaaaccggcgtcgctgcccgtgttttgttgt 353  Q
    |||||||| |||||||||| ||||||||||||||||  ||||||||||    
T  29486398 gggttgtgtttccgcttcagaccggcgtcgctgcccaagttttgttgt 29486445  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 301 - 345
Target Start/End: Original strand, 697716 - 697760
Alignment:
Q  301 gatctgggttgtgcttccgcttcaaaccggcgtcgctgcccgtgt 345  Q
    ||||| ||||| | |||||||||| ||||||||||||||||||||    
T  697716 gatctaggttgagtttccgcttcagaccggcgtcgctgcccgtgt 697760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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