View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17325_low_9 (Length: 358)
Name: NF17325_low_9
Description: NF17325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17325_low_9 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 358
Target Start/End: Complemental strand, 49756507 - 49756151
Alignment:
| Q |
1 |
aacatagcttaattaaaattaaaatcaaggctaagatttgaaagagtttaatgaaataaactttattattaccaataggattaacattgccccagtaagt |
100 |
Q |
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| T |
49756507 |
aacatagcttaattaaaactaaaatcaaggctaagatttgaaagagtttaatgaaataaactttattattaccaataggattaacattgccccagtaagt |
49756408 |
T |
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| Q |
101 |
ctcagcttgagggtgttgaagtggatcaccgtacacctcacttgtacttgtcagcaaaaatcgtgcacccactctctttgccaatcccaacatgtttagt |
200 |
Q |
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| T |
49756407 |
ctcagcttgagggtgttgaagtggatcaccgtacacctcacttgtactagtcagcaaaaatcgtgcacccactctctttgccaatcccaacatgtttagt |
49756308 |
T |
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| Q |
201 |
gtccccaccacattcgtcttgtgccaaacaattagaatcaaggattccaaaattttaaatcaaataatcatataacatatcttttcttatcaaagtggtt |
300 |
Q |
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| T |
49756307 |
gtccccaccacattcgtcttgtgccaaacaattagaatcaaggattccaaaattttaaatcaaataatcatataacatat-ttttcttatcaaaatggtt |
49756209 |
T |
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| Q |
301 |
caccatgattctgatgatacattgtcatgtcaaatatcataggcacagacgtgtgaca |
358 |
Q |
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| T |
49756208 |
caccataattctgatgatacattgtcatgtcaaatatcataggcacagacgtgtgaca |
49756151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 71 - 222
Target Start/End: Original strand, 39567038 - 39567189
Alignment:
| Q |
71 |
accaataggattaacattgccccagtaagtctcagcttgagggtgttgaagtggatcaccgtacacctcacttgtacttgtcagcaaaaatcgtgcaccc |
170 |
Q |
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| T |
39567038 |
accaattggattaacgtttccccagtaagtctccttctgaggatgctccagaggatcaccataaacctcacttgtacttgttagcaagaatctagctcca |
39567137 |
T |
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| Q |
171 |
actctctttgccaatcccaacatgtttagtgtccccaccacattcgtcttgt |
222 |
Q |
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| T |
39567138 |
actcttttcgccaatccaagcatgttcaatgttccgaccacattcgtcttgt |
39567189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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