View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17326_high_10 (Length: 552)
Name: NF17326_high_10
Description: NF17326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17326_high_10 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 501; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 16 - 552
Target Start/End: Complemental strand, 53106818 - 53106282
Alignment:
| Q |
16 |
ttgaggacaccttagtgatcaacggtccattcaccgaaattgggctggaaaatctcgatctgaataatactgagattgtagaggattcagagcctgtaga |
115 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
53106818 |
ttgaggataccttagtgatcaacggtccattcaccgaaattgggttggaaaatctcgatctgaataataccgagattgtagaggattcagagcctgtaga |
53106719 |
T |
|
| Q |
116 |
ggatatgataactggtacagtatgtgagtatgagacagaagtggtgtttgatagcgaggacgaagaaatgaataatacaggcaaagtgactgttggtgaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
53106718 |
ggatatgataactggtacagtatgtgagtatgagacagaagttgtgtttgatagcgaggacgaagaaatgaataatacaggcaaagtgactgttggtaaa |
53106619 |
T |
|
| Q |
216 |
ggatttcttgaggatgaaagtagtccaacggtatacaattcttcggtgctcttcaagaagagattgcctaagctaccatgtgaacaagcaaactcaaaat |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
53106618 |
agatttcttgaggatgaaagtagtccaacggtatacaattcttcggtgctcttcaagaagagattgcctaagctaccatgtgagcaagcaaactcaaaat |
53106519 |
T |
|
| Q |
316 |
caaatggcaccacttgtgggaaatctattactggtatgtgtttgtttatcatcattttaacattaggacttaggaggctgtttttggcctttttaattat |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
53106518 |
caaatggcaccacttgtgggaaatctattactggtatgtgtttgtttatcatcattttaacattaggacttaggaggctgtttttggcatttttaattat |
53106419 |
T |
|
| Q |
416 |
tcttgctttgacttaccttataagtaagtagtttaccgagtatatgtttctagaaagttcatgaatgattgaattttcgaaaacataatgtgcttgaagg |
515 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53106418 |
tcttgctttgacttaccttataagtaagtagtttaccgagtatttgtttctagaaagttcatgaatgattgaattttcgaaaacataatgtgcttgaagg |
53106319 |
T |
|
| Q |
516 |
tgagagctttgatgacaacaaccatcaatatctacct |
552 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53106318 |
tgagagctttgatgacaacaaccatcaatatctacct |
53106282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 16 - 358
Target Start/End: Complemental strand, 43919587 - 43919245
Alignment:
| Q |
16 |
ttgaggacaccttagtgatcaacggtccattcaccgaaattgggctggaaaatctcgatctgaataatactgagattgtagaggattcagagcctgtaga |
115 |
Q |
| |
|
||||||||||||||||||| | | | ||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43919587 |
ttgaggacaccttagtgattgatgataaattcaccgaaactgggttggaaattctcgatctgaataatactgagattgtagaggattcagagcctgtaga |
43919488 |
T |
|
| Q |
116 |
ggatatgataactggtacagtatgtgagtatgagacagaagtggtgtttgatagcgaggacgaagaaatgaataatacaggcaaagtgactgttggtgaa |
215 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
43919487 |
ggatatgataactggtacagcatgtgagtatgagacagaagtggtgcttgatagcgaggacgaagaaatgaataatacaggcaaattgacagttggtgaa |
43919388 |
T |
|
| Q |
216 |
ggatttcttgaggatgaaagtagtccaacggtatacaattcttcggtgctcttcaagaagagattgcctaagctaccatgtgaacaagcaaactcaaaat |
315 |
Q |
| |
|
|||||||| ||| | ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||| |
|
|
| T |
43919387 |
agatttcttcaggctaaaagtagtccagcggtgaacaattcttcggtgctcttcaagaagagattgcctaagctaccgtgtgagcaagataactcaaaat |
43919288 |
T |
|
| Q |
316 |
caaatggcaccacttgtgggaaatctattactggtatgtgttt |
358 |
Q |
| |
|
|||||| ||| |||||||||||| || ||||||||||||||| |
|
|
| T |
43919287 |
caaatgccacaacttgtgggaaaactggtactggtatgtgttt |
43919245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 516 - 552
Target Start/End: Complemental strand, 43919022 - 43918986
Alignment:
| Q |
516 |
tgagagctttgatgacaacaaccatcaatatctacct |
552 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |
|
|
| T |
43919022 |
tgagagctttgatgacaacaaccatcaatatccacct |
43918986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 429 - 518
Target Start/End: Complemental strand, 43919137 - 43919044
Alignment:
| Q |
429 |
taccttataagtaagtagtttaccgagtatatg---tttctagaa-agttcatgaatgattgaattttcgaaaacataatgtgcttgaaggtga |
518 |
Q |
| |
|
|||||||| | ||||||||||||| |||| ||| |||||||| | ||||||||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
43919137 |
taccttattaataagtagtttaccaagtaaatgcaatttctagagcatttcatgaatgattgacatttgaaaaacataatgtgcttgaaggtga |
43919044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University