View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17326_high_17 (Length: 403)
Name: NF17326_high_17
Description: NF17326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17326_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 345; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 20 - 389
Target Start/End: Original strand, 29596796 - 29597165
Alignment:
| Q |
20 |
ataactcatgatgtgcttgcaattgggttgttggcctataattcaaagaggagccggattatacaggaaaataatgaatgcatcagtcgcaagagctcag |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29596796 |
ataactcatgatgtgcttgcaattgggttgttggcctataattcaaagaggagccggattatacaggaaaataatgaatgcatcagtcgcaagagctcag |
29596895 |
T |
|
| Q |
120 |
tatgtaacgaagtaaatttgtgcaaacaaatttaaacttcaatacgatacaaaacgctcaccatttgcaaattttgaagcaaattgaattaatataagtt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29596896 |
tatgtaacgaagtaaatttgtgcaaacaaatttaaacttcaatacgatacaaaacgctcaccatttgcaaattttgaagcaaattgaattaatataagtt |
29596995 |
T |
|
| Q |
220 |
tgaagaaatnnnnnnnctctggcttttccttttctcatctcagtaatgatttatagataataaatctttttaagtcttctatcaaaaacaaatatttcca |
319 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29596996 |
tgaagaaataaaaaaactctggcttttccttttctcatctcagtaatgatttatagataataaatctttttaagtcttctatcaaaaacaaatatttcca |
29597095 |
T |
|
| Q |
320 |
agtctaaatgggaaatttttcactttcccattgacatgtttcctgctttaacctttgaaagactaatatt |
389 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29597096 |
agtctaaatgggaaatatttcactttcccattgacatgtttcctgctttaacctttgaaagactaatatt |
29597165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 185 - 375
Target Start/End: Original strand, 29593634 - 29593822
Alignment:
| Q |
185 |
tgcaaattttgaagcaaattgaattaatataagtttgaagaaatnnnnnnnctctggcttttccttttctcatctcagtaa-tgatttatagataataaa |
283 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||| |||||||||||| |||| ||||||||||||| |
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| T |
29593634 |
tgcaaattttgaagcaaattgaattaatataagtttgaagaaataaaacaactcttgtttttccttttgtcatctcagtaattgatctatagataataaa |
29593733 |
T |
|
| Q |
284 |
tctttttaagtcttctatcaaaaacaaatatttccaagtctaaatgggaaatttttcactttcccattgacatgtttcctgctttaaccttt |
375 |
Q |
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| ||| ||||||||||| |||||||||| ||||||||||||||||| | || ||| ||||||||||||||||||||| ||||||||||| |
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| T |
29593734 |
tatttctaagtcttctaccaaaaacaaagatttccaagtctaaatg---tacttgtcattttcccattgacatgtttcctcctttaaccttt |
29593822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 144 - 288
Target Start/End: Complemental strand, 29648294 - 29648149
Alignment:
| Q |
144 |
aacaaatttaaacttcaatacgatacaaaa-cgctcaccatttgcaaattttgaagcaaattgaattaatataagtttgaagaaatnnnnnnnctctggc |
242 |
Q |
| |
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||||||||| ||||| ||||| |||||||| |||||||||| ||||||||||||||||||| | |||||||||| |||||||||| ||||| |
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| T |
29648294 |
aacaaatttgaactttaatacaatacaaaaacgctcaccatctgcaaattttgaagcaaatgcatttaatataaggttgaagaaataaaataattctggt |
29648195 |
T |
|
| Q |
243 |
ttttccttttctcatctcagtaatgatttatagataataaatcttt |
288 |
Q |
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||||||||||||||||||||||||||| || |||||||||||||| |
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| T |
29648194 |
ttttccttttctcatctcagtaatgatctagtgataataaatcttt |
29648149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 144 - 310
Target Start/End: Complemental strand, 29643094 - 29642927
Alignment:
| Q |
144 |
aacaaatttaaacttcaatacgatacaaaa-cgctcaccatttgcaaattttgaagcaaattgaattaatataagtttgaagaaatnnnnnnnctctggc |
242 |
Q |
| |
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||||| ||| ||||||||||| |||||||| |||||||||| |||||||||||||||| || ||||||||||||||||||||||| |||| |
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| T |
29643094 |
aacaactttgaacttcaatacaatacaaaaacgctcaccatctgcaaattttgaagcagatgcaattaatataagtttgaagaaataaaataattctgat |
29642995 |
T |
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| Q |
243 |
ttttccttttctcatctcagtaatgatttatagataataaatctttttaagtcttctatcaaaaacaa |
310 |
Q |
| |
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|||||||||||| |||| ||||||||| | | ||||||||| ||||| ||||||| || ||||||||| |
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| T |
29642994 |
ttttccttttctaatcttagtaatgatctgttgataataaaacttttcaagtcttataccaaaaacaa |
29642927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 144 - 228
Target Start/End: Original strand, 29820576 - 29820661
Alignment:
| Q |
144 |
aacaaatttaaacttcaatacgatacaaaa-cgctcaccatttgcaaattttgaagcaaattgaattaatataagtttgaagaaat |
228 |
Q |
| |
|
||||| ||| ||||||||||| |||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
29820576 |
aacaactttgaacttcaatacaatacaaaaacgctcaccatctgcaaattttgaagcaaatggaattaatataagtttgaagaaat |
29820661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 143 - 180
Target Start/End: Original strand, 29593574 - 29593611
Alignment:
| Q |
143 |
aaacaaatttaaacttcaatacgatacaaaacgctcac |
180 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
29593574 |
aaacaaatttaaacttcaatacgatacaaaacgctcac |
29593611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 20 - 87
Target Start/End: Complemental strand, 29643271 - 29643204
Alignment:
| Q |
20 |
ataactcatgatgtgcttgcaattgggttgttggcctataattcaaagaggagccggattatacagga |
87 |
Q |
| |
|
||||||| ||||||||||||| |||||| || | ||||||||||||| |||| ||| ||||||||||| |
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| T |
29643271 |
ataactcttgatgtgcttgcagttgggtcgtagacctataattcaaaaaggatccgtattatacagga |
29643204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 29648505 - 29648441
Alignment:
| Q |
20 |
ataactcatgatgtgcttgcaattgggttgttggcctataattcaaagaggagccggattataca |
84 |
Q |
| |
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||||||| |||||||||||| |||||| || | ||||||||||||| |||| ||| |||||||| |
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| T |
29648505 |
ataactctcgatgtgcttgcagttgggtcgtagacctataattcaaaaaggatccgtattataca |
29648441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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