View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17326_high_22 (Length: 346)
Name: NF17326_high_22
Description: NF17326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17326_high_22 |
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Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 15 - 330
Target Start/End: Complemental strand, 12488402 - 12488087
Alignment:
| Q |
15 |
aatatgagatacaacaaaattcatgctagctaagagtttcatacaattaagccatctattgcttaagtgccaaggaactatgctcttgttagagaaagca |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12488402 |
aatatgagatacaacaaaattcatgctagctaagagtttcatacaattaagccatctattgcttaagtgccaaggaactatgctcttgttagagaaagca |
12488303 |
T |
|
| Q |
115 |
ttcaccactagtatggagtcaaattccaaccagaaatttaaccaattcttatgataagctatatctatggctctcattgcaccaattaattcaacatgaa |
214 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |
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| T |
12488302 |
ttcaccactagtatggagtcagattccaaccagaaatttaaccaattcttatgataagctatctctatggctctcattgcaccaattaattcagcatgaa |
12488203 |
T |
|
| Q |
215 |
aggcagaaaccataccaagattttcagatatgcaaagtaaacaatcagcttcagagtttctaaaaataataccacttgcagaagctaaatcagaagatga |
314 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
12488202 |
agtcagaaaccataccaagattttcagatatgcaaagtaaacaatcagcttcagagtttctaaaaataataccacttgcagaagctaaagcagaagatga |
12488103 |
T |
|
| Q |
315 |
accatctgtatttcct |
330 |
Q |
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|||||||||||||||| |
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| T |
12488102 |
accatctgtatttcct |
12488087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 15 - 330
Target Start/End: Complemental strand, 230774 - 230459
Alignment:
| Q |
15 |
aatatgagatacaacaaaattcatgctagctaagagtttcatacaattaagccatctattgcttaagtgccaaggaactatgctcttgttagagaaagca |
114 |
Q |
| |
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||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
230774 |
aatatgagatataacaaaattcatgctagctaaaagtttcatacaattaagccatctattgcttaagtgccaaggaactatgctcttgttagagaaagca |
230675 |
T |
|
| Q |
115 |
ttcaccactagtatggagtcaaattccaaccagaaatttaaccaattcttatgataagctatatctatggctctcattgcaccaattaattcaacatgaa |
214 |
Q |
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||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||| |
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| T |
230674 |
ttcaccactagtatggaatcagatttcaaccagaaatttaaccaattcttatgataagctatctctatggctcttattgcaccaattaattcagcatgaa |
230575 |
T |
|
| Q |
215 |
aggcagaaaccataccaagattttcagatatgcaaagtaaacaatcagcttcagagtttctaaaaataataccacttgcagaagctaaatcagaagatga |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
230574 |
aggcagaaaccataccaagattttcagatatgcaaagtaaataatcagctttagagtttctaaaaataataccacttgcagaagctaaagcagaagatga |
230475 |
T |
|
| Q |
315 |
accatctgtatttcct |
330 |
Q |
| |
|
||||| |||||||||| |
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| T |
230474 |
accatatgtatttcct |
230459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 19 - 330
Target Start/End: Complemental strand, 21851611 - 21851300
Alignment:
| Q |
19 |
tgagatacaacaaaattcatgctagctaagagtttcatacaattaagccatctattgcttaagtgccaaggaactatgctcttgttagagaaagcattca |
118 |
Q |
| |
|
||||||| ||||||||||||| | ||| || |||||||| || ||||||| | ||||| |||||||| || ||| | | || || || ||||||| |
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| T |
21851611 |
tgagatattacaaaattcatgccatttaaaagcttcatacagttggaccatctagtacttaattgccaaggcacaatgttactatttgaaaaggcattca |
21851512 |
T |
|
| Q |
119 |
ccactagtatggagtcaaattccaaccagaaatttaaccaattcttatgataagctatatctatggctctcattgcaccaattaattcaacatgaaaggc |
218 |
Q |
| |
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|||||| |||||||| |||| ||||| ||||| ||||| || | || ||||| | |||||||| ||||||||||| | ||||||| |||| || || |
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| T |
21851511 |
ccactaacatggagtctgattctaaccaaaaattcaaccagtttctttggaaagctgtttctatggccctcattgcacccaataattcagcatggaaagc |
21851412 |
T |
|
| Q |
219 |
agaaaccataccaagattttcagatatgcaaagtaaacaatcagcttcagagtttctaaaaataataccacttgcagaagctaaatcagaagatgaacca |
318 |
Q |
| |
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||||||||||||||||||||||||||||||||| | ||||| || | | ||| |||||| ||||| ||||| ||||||||| ||| || || || ||| |
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| T |
21851411 |
agaaaccataccaagattttcagatatgcaaagcaggcaatctgcattaaagtctctaaatataatgccactagcagaagctgaatttgatgaagagcca |
21851312 |
T |
|
| Q |
319 |
tctgtatttcct |
330 |
Q |
| |
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||||| |||||| |
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|
| T |
21851311 |
tctgtgtttcct |
21851300 |
T |
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