View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17326_high_23 (Length: 338)

Name: NF17326_high_23
Description: NF17326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17326_high_23
NF17326_high_23
[»] chr5 (1 HSPs)
chr5 (17-317)||(2264922-2265202)


Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 17 - 317
Target Start/End: Original strand, 2264922 - 2265202
Alignment:
Q  17 tttcatataaagctttgcttgagacatggaatggaagtgtcaaaccttcaacgagaagcaatacaaataattctttaaaatccaaaacaaagtttatatg 116  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                   ||||    
T  2264922 tttcatataaagctt-gcttgagacatggaatggaagtgtcaaaccttcaacgagaagcaatacaaataattcttta-------------------tatg 2265001  T
Q  117 ctagaataattatgcctaggagagagatataattgaacaaacaaaataaagagtcttaatttaatttgctttatgttcacttctttcttttggcagaaaa 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2265002 ctagaataattatgcctaggagagagatataattgaacaaacaaaataaagagtcttaatttaatttgctttatgttcacttctttcttttggcagaaaa 2265101  T
Q  217 agcatcagtgtgtctcataatccagaatctctctatttcttctgctttacgacctggaatgcgacctgctatcaaattccacctgttgcattgtatagtt 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2265102 agcatcagtgtgtctcataatccagaatctctctatttcttctgctttacgacctggaatgcgacctgctatcaaattccacctgttgcattgtatagtt 2265201  T

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