View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17326_high_24 (Length: 332)
Name: NF17326_high_24
Description: NF17326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17326_high_24 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 17 - 332
Target Start/End: Original strand, 8353742 - 8354057
Alignment:
| Q |
17 |
aggaaacttttgctccaacaagagcaagtggatttgaagaaagtgttctattcctctttagaagtggttcattcgttggatttctttctggatctctttc |
116 |
Q |
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| T |
8353742 |
aggaaacttttgctccaacaagagcaagtggatttgaagaaagtgttctattcctctttagaagtggttcattcattggatttctttctggatctctttc |
8353841 |
T |
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| Q |
117 |
ttcaacttcttcctccattgatgtgttttccattacaaaacttaattcttcccccattggagtaacacatgcacacaaaaaattgttgacaaagtttaag |
216 |
Q |
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| T |
8353842 |
ttcaacttcttcctccattgatgtgttttccattacaaaacttaattcttcccccattggagtaacacatgcacacaaaaaattgttgacaaagtttaag |
8353941 |
T |
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| Q |
217 |
aatgtttttagattagaacaaagtttgagacactttgtctataaatggtaattttataagaaagtggagaatagaaactgttgtgattggattataatat |
316 |
Q |
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| T |
8353942 |
aatgtttttagattagaacaaagtttgagacactttgtctataaatggtaattttataagaaagtggagaatagaaactgttgtgattggattataatat |
8354041 |
T |
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| Q |
317 |
atggttgatttgcaat |
332 |
Q |
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| T |
8354042 |
atggttgatttgcaat |
8354057 |
T |
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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 74
Target Start/End: Complemental strand, 10396152 - 10396095
Alignment:
| Q |
17 |
aggaaacttttgctccaacaagagcaagtggatttgaagaaagtgttctattcctctt |
74 |
Q |
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| T |
10396152 |
aggaaactttttcaccaacaagagcaagtggacttgatgatagtgttctactcctctt |
10396095 |
T |
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