View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17326_high_27 (Length: 318)

Name: NF17326_high_27
Description: NF17326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17326_high_27
NF17326_high_27
[»] chr4 (6 HSPs)
chr4 (1-185)||(34856696-34856880)
chr4 (120-184)||(280966-281030)
chr4 (71-185)||(8260241-8260355)
chr4 (71-165)||(21071322-21071416)
chr4 (113-185)||(25768609-25768681)
chr4 (58-185)||(55676117-55676244)
[»] chr7 (16 HSPs)
chr7 (1-186)||(20623916-20624101)
chr7 (60-177)||(12904336-12904452)
chr7 (23-186)||(36098823-36098986)
chr7 (67-185)||(29984121-29984239)
chr7 (58-185)||(16216271-16216398)
chr7 (75-186)||(20130580-20130691)
chr7 (113-188)||(33627415-33627491)
chr7 (67-165)||(36859013-36859111)
chr7 (67-165)||(47424603-47424701)
chr7 (140-185)||(1583216-1583261)
chr7 (112-185)||(14801282-14801355)
chr7 (112-185)||(15248274-15248347)
chr7 (144-185)||(45268679-45268720)
chr7 (67-135)||(18249742-18249810)
chr7 (58-186)||(44605040-44605168)
chr7 (125-185)||(46171475-46171535)
[»] chr5 (13 HSPs)
chr5 (1-186)||(33224108-33224283)
chr5 (122-185)||(22638786-22638849)
chr5 (88-170)||(3756290-3756372)
chr5 (67-185)||(8760208-8760326)
chr5 (88-170)||(14639143-14639225)
chr5 (112-165)||(38041367-38041420)
chr5 (128-185)||(40144656-40144713)
chr5 (125-185)||(6273971-6274031)
chr5 (78-157)||(6513794-6513873)
chr5 (126-185)||(32623011-32623070)
chr5 (143-185)||(32382349-32382391)
chr5 (112-185)||(33898152-33898225)
chr5 (145-185)||(29824080-29824120)
[»] chr8 (12 HSPs)
chr8 (186-308)||(28521137-28521259)
chr8 (23-185)||(40484689-40484851)
chr8 (35-185)||(38209712-38209862)
chr8 (122-185)||(27678559-27678622)
chr8 (95-186)||(45218756-45218847)
chr8 (112-185)||(3656554-3656627)
chr8 (129-184)||(14910917-14910972)
chr8 (112-185)||(5969296-5969369)
chr8 (132-185)||(13486455-13486508)
chr8 (145-185)||(6546497-6546537)
chr8 (145-186)||(8014150-8014191)
chr8 (14-134)||(28760978-28761098)
[»] chr2 (12 HSPs)
chr2 (30-136)||(14886214-14886320)
chr2 (6-185)||(37314227-37314406)
chr2 (120-186)||(43868961-43869027)
chr2 (57-185)||(12341111-12341239)
chr2 (76-185)||(18541452-18541561)
chr2 (137-189)||(10809768-10809820)
chr2 (6-187)||(7502049-7502230)
chr2 (142-185)||(12364661-12364704)
chr2 (112-186)||(3989733-3989807)
chr2 (128-186)||(6064830-6064888)
chr2 (144-185)||(19882766-19882807)
chr2 (144-185)||(23251787-23251828)
[»] scaffold0036 (2 HSPs)
scaffold0036 (3-98)||(52602-52697)
scaffold0036 (122-185)||(52704-52767)
[»] chr1 (16 HSPs)
chr1 (6-185)||(44258408-44258587)
chr1 (23-185)||(28235605-28235767)
chr1 (127-185)||(32364973-32365031)
chr1 (112-186)||(27414333-27414406)
chr1 (125-187)||(33690862-33690924)
chr1 (123-185)||(52586091-52586153)
chr1 (125-185)||(24639595-24639655)
chr1 (68-165)||(18033470-18033567)
chr1 (67-185)||(50357903-50358021)
chr1 (58-186)||(37034146-37034274)
chr1 (58-185)||(5384011-5384138)
chr1 (67-186)||(12793543-12793662)
chr1 (78-164)||(20726793-20726879)
chr1 (123-185)||(19553323-19553385)
chr1 (14-103)||(45484718-45484807)
chr1 (95-183)||(37670719-37670807)
[»] scaffold0045 (1 HSPs)
scaffold0045 (35-185)||(28589-28739)
[»] chr3 (15 HSPs)
chr3 (122-186)||(37599185-37599249)
chr3 (125-185)||(42908678-42908738)
chr3 (127-185)||(51536374-51536432)
chr3 (131-186)||(29728805-29728860)
chr3 (78-165)||(39851382-39851469)
chr3 (123-185)||(2848494-2848556)
chr3 (6-184)||(11675549-11675727)
chr3 (138-182)||(15101427-15101471)
chr3 (125-185)||(16056802-16056862)
chr3 (128-188)||(30464494-30464554)
chr3 (123-186)||(10258313-10258376)
chr3 (138-185)||(42216476-42216523)
chr3 (58-185)||(52403641-52403768)
chr3 (143-185)||(23241319-23241361)
chr3 (67-185)||(33635758-33635876)
[»] scaffold0332 (1 HSPs)
scaffold0332 (59-185)||(1645-1771)
[»] scaffold0070 (1 HSPs)
scaffold0070 (112-185)||(13416-13489)
[»] scaffold0242 (1 HSPs)
scaffold0242 (130-165)||(16977-17012)
[»] scaffold0001 (1 HSPs)
scaffold0001 (68-186)||(138353-138471)
[»] chr6 (4 HSPs)
chr6 (123-185)||(22350471-22350533)
chr6 (143-185)||(9367517-9367559)
chr6 (143-185)||(11466197-11466239)
chr6 (123-185)||(21528099-21528161)
[»] scaffold0116 (1 HSPs)
scaffold0116 (68-185)||(8610-8727)


Alignment Details
Target: chr4 (Bit Score: 165; Significance: 3e-88; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 34856696 - 34856880
Alignment:
Q  1 tgttgaaccggtccggttttataaactggccgattcaccggtttttaccgatttccgccgagccacgccggtttacaccggtttgattgcatggccgatc 100  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  34856696 tgttgaaccggtccggttttgtaaaccggccgattcaccggtttttaccggtttccgccgagccacgccggtttacaccggtttgattgcatggccgatc 34856795  T
Q  101 caataaatagatcgaaccagacaccccaccggttcatggtccgaccggttcaaccggccggtccgagccggttttaaaaactatg 185  Q
    |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  34856796 caataaatagatcgaaccggacaccccaccggttcatggtccgatcggttcaaccggccggtccgagccggttttaaaaactatg 34856880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 120 - 184
Target Start/End: Complemental strand, 281030 - 280966
Alignment:
Q  120 gacaccccaccggttcatggtccgaccggttcaaccggccggtccgagccggttttaaaaactat 184  Q
    ||||| ||||||||||| | | |||||||  ||||||||||||||||||||||||| ||||||||    
T  281030 gacacaccaccggttcacgattcgaccggcccaaccggccggtccgagccggtttttaaaactat 280966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 185
Target Start/End: Complemental strand, 8260355 - 8260241
Alignment:
Q  71 gtttacaccggtttgattgcatggccgatccaataaatagatcgaaccagacaccccaccggttcatggtccgaccggttcaaccggccggtccgagccg 170  Q
    |||| ||||||||| | ||||| ||||||||||||   ||| |||||| ||||||| ||||||||  |||   |||||| | |||||||| ||| |||||    
T  8260355 gttttcaccggtttaactgcatagccgatccaatatgcagaccgaaccggacaccctaccggttctcggttgaaccggtccgaccggccgatccaagccg 8260256  T
Q  171 gttttaaaaactatg 185  Q
    ||||| |||||||||    
T  8260255 gtttttaaaactatg 8260241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 165
Target Start/End: Original strand, 21071322 - 21071416
Alignment:
Q  71 gtttacaccggtttgattgcatggccgatccaataaatagatcgaaccagacaccccaccggttcatggtccgaccggttcaaccggccggtccg 165  Q
    |||||||||||| | ||  ||||||||||||||| ||||  | ||||| ||||||||||  |||| |||||||||||||| || |||||| ||||    
T  21071322 gtttacaccggtctaatcacatggccgatccaatgaataacttgaaccggacaccccactagttcgtggtccgaccggttgaatcggccgatccg 21071416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 185
Target Start/End: Original strand, 25768609 - 25768681
Alignment:
Q  113 cgaaccagacaccccaccggttcatggtccgaccggttcaaccggccggtccgagccggttttaaaaactatg 185  Q
    ||||||||| |||||||||||||| |||  || |||| | |||| ||||| |||||||||||| |||||||||    
T  25768609 cgaaccagataccccaccggttcacggttggatcggtccgaccgaccggttcgagccggttttcaaaactatg 25768681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 58 - 185
Target Start/End: Original strand, 55676117 - 55676244
Alignment:
Q  58 ccgagccacgccggtttacaccggtttgattgcatggccgatccaataaatagatcgaaccagacaccccaccggttcatggtccgaccggttcaaccgg 157  Q
    |||||||| ||||||||  |||||||  |||||||| | ||||  ||||| || | ||||| || || ||||||||| | ||||| ||||||   |||||    
T  55676117 ccgagccaagccggttttaaccggttcaattgcatgactgatctgataaacagcttgaaccggatacaccaccggtttacggtccaaccggtcggaccgg 55676216  T
Q  158 ccggtccgagccggttttaaaaactatg 185  Q
    |||||||||| ||| ||| |||||||||    
T  55676217 ccggtccgagtcgggtttcaaaactatg 55676244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 154; Significance: 1e-81; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 20623916 - 20624101
Alignment:
Q  1 tgttgaaccggtccggttttataaactggccgattcaccggtttttaccgatttccgccgagccacgccggtttacaccggtttgattgcatggccgatc 100  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||    
T  20623916 tgttgaaccggtccggttttgtaaaccggccgattcaccggtttttaccggtttccgccgagccatgtcggtttacaccggtttgattgcatggccgatc 20624015  T
Q  101 caataaatagatcgaaccagacaccccaccggttcatggtccgaccggttcaaccggccggtccgagccggttttaaaaactatgg 186  Q
    |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  20624016 caataaatagattgaaccggacaccccaccggttcatggtccgaccggttcaaccggccggtccgatccggttttaaaaactatgg 20624101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 60 - 177
Target Start/End: Complemental strand, 12904452 - 12904336
Alignment:
Q  60 gagccacgccggtttacaccggtttgattgcatggccgatccaataaatagatcgaaccagacaccccaccggttcatggtccgaccggttcaaccggcc 159  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | || ||||| |  ||||  |||||| |||||    
T  12904452 gagccacgtcggtttacaccggtttgattgcatggccgatccaataaatagatcgaactagacaccctatcgcttcat-gaacgactagttcaatcggcc 12904354  T
Q  160 ggtccgagccggttttaa 177  Q
    ||| ||||||||||||||    
T  12904353 ggttcgagccggttttaa 12904336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 23 - 186
Target Start/End: Complemental strand, 36098986 - 36098823
Alignment:
Q  23 aaactggccgattcaccggtttttaccgatttccgccgagccacgccggtttacaccggtttgattgcatggccgatccaataaatagatcgaaccagac 122  Q
    |||| |||||| |||||| |||| |||| |||  |||||| ||| ||||||  |||||| |||| |||||| ||||||||  |  ||| ||||||| | |    
T  36098986 aaaccggccgagtcaccgattttgaccggttttggccgagtcacaccggttctcaccgggttgaatgcatgtccgatccatcatgtagctcgaaccggcc 36098887  T
Q  123 accccaccggttcatggtccgaccggttcaaccggccggtccgagccggttttaaaaactatgg 186  Q
    || ||||||||||| |||| ||||||||| |||||||||||||  |||||||| ||||||||||    
T  36098886 acaccaccggttcacggtcggaccggttcgaccggccggtccggtccggtttttaaaactatgg 36098823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 67 - 185
Target Start/End: Original strand, 29984121 - 29984239
Alignment:
Q  67 gccggtttacaccggtttgattgcatggccgatccaataaatagatcgaaccagacaccccaccggttcatggtccgaccggttcaaccggccggtccga 166  Q
    |||||||  ||||||||| | |||||| |||||||||||  |  | |||||| |  ||||| |||||||| |||| ||||| |||||||||||||||||     
T  29984121 gccggttctcaccggtttaaatgcatgaccgatccaatatgtcaaccgaaccggttacccctccggttcacggtcggaccgattcaaccggccggtccgg 29984220  T
Q  167 gccggttttaaaaactatg 185  Q
     |||||||| |||||||||    
T  29984221 tccggttttcaaaactatg 29984239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 58 - 185
Target Start/End: Complemental strand, 16216398 - 16216271
Alignment:
Q  58 ccgagccacgccggtttacaccggtttgattgcatggccgatccaataaatagatcgaaccagacaccccaccggttcatggtccgaccggttcaaccgg 157  Q
    |||||||| ||||||||  |||||||  |||||||| ||||||  ||||| || ||||||| |  || ||||||||||| ||| | | ||||  ||||||    
T  16216398 ccgagccaagccggttttaaccggttcaattgcatgaccgatctgataaacagctcgaaccgggtacaccaccggttcacggttcaatcggtcaaaccgg 16216299  T
Q  158 ccggtccgagccggttttaaaaactatg 185  Q
    ||||||| |||||| ||| |||||||||    
T  16216298 ccggtccaagccggattttaaaactatg 16216271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 75 - 186
Target Start/End: Complemental strand, 20130691 - 20130580
Alignment:
Q  75 acaccggtttgattgcatggccgatccaataaatagatcgaaccagacaccccaccggttcatggtccgaccggttcaaccggccggtccgagccggttt 174  Q
    |||||||||  |||||||| |||||||| | |  || ||||||| ||||   ||| |||||  |||| |||||||||||||||||||||||| ||| |||    
T  20130691 acaccggttctattgcatgaccgatccatttatcagctcgaaccggacatagcactggttcccggtctgaccggttcaaccggccggtccgatccgattt 20130592  T
Q  175 taaaaactatgg 186  Q
    | ||||||||||    
T  20130591 ttaaaactatgg 20130580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 188
Target Start/End: Complemental strand, 33627491 - 33627415
Alignment:
Q  113 cgaaccagacaccccaccggttcatggtccgaccggttcaaccggccggtccgagccgg-ttttaaaaactatggat 188  Q
    |||||| || ||||||||||||| ||||  ||||||| | ||| ||||||||||||||| |||| ||||||||||||    
T  33627491 cgaaccggataccccaccggttcctggttggaccggtccgacccgccggtccgagccggttttttaaaactatggat 33627415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 165
Target Start/End: Original strand, 36859013 - 36859111
Alignment:
Q  67 gccggtttacaccggtttgattgcatggccgatccaataaatagatcgaaccagacaccccaccggttcatggtccgaccggttcaaccggccggtccg 165  Q
    |||||||  ||||||||| | |||||| |||||||||||  |  | |||||| |  ||||| |||||||| |||| ||||||||| |||||||||||||    
T  36859013 gccggttctcaccggtttaaatgcatgaccgatccaatatgtcaaccgaaccggttacccctccggttcacggtcggaccggttcgaccggccggtccg 36859111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 165
Target Start/End: Original strand, 47424603 - 47424701
Alignment:
Q  67 gccggtttacaccggtttgattgcatggccgatccaataaatagatcgaaccagacaccccaccggttcatggtccgaccggttcaaccggccggtccg 165  Q
    |||||||  ||||||||| | |||||| |||||||||||  |  | |||||| |  ||||| ||| ||||||||| ||||||||| |||||||||||||    
T  47424603 gccggttctcaccggtttaaatgcatgaccgatccaatatgtcaaccgaaccggttacccctccgattcatggtcggaccggttcgaccggccggtccg 47424701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 185
Target Start/End: Original strand, 1583216 - 1583261
Alignment:
Q  140 tccgaccggttcaaccggccggtccgagccggttttaaaaactatg 185  Q
    ||||||||||||||||||||||||||  ||| |||| |||||||||    
T  1583216 tccgaccggttcaaccggccggtccggtccgatttttaaaactatg 1583261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 185
Target Start/End: Complemental strand, 14801355 - 14801282
Alignment:
Q  112 tcgaaccagacaccccaccggttcatggtccgaccggttcaaccggccggtccgagccggttttaaaaactatg 185  Q
    ||||||| | ||||||||||| || |||||  ||||||||||||||||| ||||  ||| |||| |||||||||    
T  14801355 tcgaaccggtcaccccaccggatcctggtcgaaccggttcaaccggccgatccggtccgattttcaaaactatg 14801282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 185
Target Start/End: Complemental strand, 15248347 - 15248274
Alignment:
Q  112 tcgaaccagacaccccaccggttcatggtccgaccggttcaaccggccggtccgagccggttttaaaaactatg 185  Q
    ||||||| | ||||||||||| || |||||  ||||||||||||||||| ||||  ||| |||| |||||||||    
T  15248347 tcgaaccggtcaccccaccggatcctggtcgaaccggttcaaccggccgatccggtccgattttcaaaactatg 15248274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 185
Target Start/End: Complemental strand, 45268720 - 45268679
Alignment:
Q  144 accggttcaaccggccggtccgagccggttttaaaaactatg 185  Q
    ||||||| |||||||||||||||||||| ||| |||||||||    
T  45268720 accggttgaaccggccggtccgagccggattttaaaactatg 45268679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 135
Target Start/End: Complemental strand, 18249810 - 18249742
Alignment:
Q  67 gccggtttacaccggtttgattgcatggccgatccaataaatagatcgaaccagacaccccaccggttc 135  Q
    |||||||||||||| |  ||||||||| |||||||||  |||||| |||||| || | |||||||||||    
T  18249810 gccggtttacaccgatccgattgcatgtccgatccaaagaatagaccgaaccggataacccaccggttc 18249742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 186
Target Start/End: Complemental strand, 44605168 - 44605040
Alignment:
Q  58 ccgagccacgccggtttacaccggtttgattgcatggccgatccaataaatagatcgaaccagacaccccaccggttcatggtccgaccggttcaaccgg 157  Q
    |||||||||||||||||  |||||||  ||||||  |||||||  || || || ||||||| | ||  |||| ||||||  |||| ||||||   |||||    
T  44605168 ccgagccacgccggttttaaccggttcaattgcacagccgatctgattaacagttcgaaccggtcataccactggttcactgtccaaccggtcggaccgg 44605069  T
Q  158 ccggtccgagccggttttaaaaactatgg 186  Q
    |||||||||||||  ||| ||||||||||    
T  44605068 ccggtccgagccgagttttaaaactatgg 44605040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 185
Target Start/End: Original strand, 46171475 - 46171535
Alignment:
Q  125 cccaccggttcatggtccgaccggttcaaccggccggtccgagccggttttaaaaactatg 185  Q
    |||||||||||| ||| ||| |||| |||||||||||| |||||||  ||| |||||||||    
T  46171475 cccaccggttcacggttcgatcggtccaaccggccggttcgagccgagtttcaaaactatg 46171535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 131; Significance: 6e-68; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 33224283 - 33224108
Alignment:
Q  1 tgttgaaccggtccggttttataaactggccgattcaccggtttttaccgatttccgccgagccacgccggtttacaccggtttgattgcatggccgatc 100  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||          ||||||||||||||||    
T  33224283 tgttgaaccggtccggttttgtaaaccggccgattcaccggtttttaccggtttccgccgagccacgccggttt----------gattgcatggccgatc 33224194  T
Q  101 caataaatagatcgaaccagacaccccaccggttcatggtccgaccggttcaaccggccggtccgagccggttttaaaaactatgg 186  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  33224193 caataaatagatcgaaccggacaccccaccggttcatggtccgaccggttcaaccggccggtccgatccggttttaaaaactatgg 33224108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 122 - 185
Target Start/End: Original strand, 22638786 - 22638849
Alignment:
Q  122 caccccaccggttcatggtccgaccggttcaaccggccggtccgagccggttttaaaaactatg 185  Q
    |||||||||||||| ||||| |||||||||||||||||||||||| ||| |||| |||||||||    
T  22638786 caccccaccggttcctggtcggaccggttcaaccggccggtccgatccgattttcaaaactatg 22638849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 170
Target Start/End: Original strand, 3756290 - 3756372
Alignment:
Q  88 tgcatggccgatccaataaatagatcgaaccagacaccccaccggttcatggtccgaccggttcaaccggccggtccgagccg 170  Q
    ||||||||||||||||   || | ||||||| | |  |||||||||||| |||||||||||| | ||||||||||||||||||    
T  3756290 tgcatggccgatccaaatgatggctcgaaccggcctacccaccggttcacggtccgaccggtccgaccggccggtccgagccg 3756372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 185
Target Start/End: Complemental strand, 8760326 - 8760208
Alignment:
Q  67 gccggtttacaccggtttgattgcatggccgatccaataaatagatcgaaccagacaccccaccggttcatggtccgaccggttcaaccggccggtccga 166  Q
    |||||||  ||||||||| | |||||| |||||||||||  |  | |||||| |  ||||| |||||||| |||| ||||||||| |||||||| ||||     
T  8760326 gccggttctcaccggtttaaatgcatgaccgatccaatatgtcaaccgaaccggttacccctccggttcacggtcggaccggttcgaccggccgatccgg 8760227  T
Q  167 gccggttttaaaaactatg 185  Q
     |||||||| |||||||||    
T  8760226 tccggttttcaaaactatg 8760208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 170
Target Start/End: Original strand, 14639143 - 14639225
Alignment:
Q  88 tgcatggccgatccaataaatagatcgaaccagacaccccaccggttcatggtccgaccggttcaaccggccggtccgagccg 170  Q
    ||||||||||||||||   || | ||||||| | |  |||||||||||| |||||||||||| | ||||||||||||||||||    
T  14639143 tgcatggccgatccaaatgatggctcgaaccggcctacccaccggttcacggtccgaccggtccgaccggccggtccgagccg 14639225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 165
Target Start/End: Original strand, 38041367 - 38041420
Alignment:
Q  112 tcgaaccagacaccccaccggttcatggtccgaccggttcaaccggccggtccg 165  Q
    ||||||| | |||||||||||||| | ||| |||||||||||||||||||||||    
T  38041367 tcgaaccggtcaccccaccggttcctagtcggaccggttcaaccggccggtccg 38041420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 128 - 185
Target Start/End: Original strand, 40144656 - 40144713
Alignment:
Q  128 accggttcatggtccgaccggttcaaccggccggtccgagccggttttaaaaactatg 185  Q
    ||||||||| |||| |||||||||||||| ||||||||  |||||||| |||||||||    
T  40144656 accggttcacggtcggaccggttcaaccgaccggtccggcccggttttcaaaactatg 40144713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 185
Target Start/End: Original strand, 6273971 - 6274031
Alignment:
Q  125 cccaccggttcatggtccgaccggttcaaccggccggtccgagccggttttaaaaactatg 185  Q
    |||||||||||| ||| |||||||| |||||||||||| |||||||  ||| |||||||||    
T  6273971 cccaccggttcacggttcgaccggtccaaccggccggttcgagccgagtttcaaaactatg 6274031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 78 - 157
Target Start/End: Complemental strand, 6513873 - 6513794
Alignment:
Q  78 ccggtttgattgcatggccgatccaataaatagatcgaaccagacaccccaccggttcatggtccgaccggttcaaccgg 157  Q
    |||||||||||||||| |||||||  | |  |  ||||||| | |||||||||| ||||||||| |||||||||||||||    
T  6513873 ccggtttgattgcatgaccgatccgtttatcaactcgaaccggtcaccccaccgcttcatggtcggaccggttcaaccgg 6513794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 126 - 185
Target Start/End: Complemental strand, 32623070 - 32623011
Alignment:
Q  126 ccaccggttcatggtccgaccggttcaaccggccggtccgagccggttttaaaaactatg 185  Q
    |||||||||| ||||| ||||||||| |||||||||||||| |||  ||| |||||||||    
T  32623070 ccaccggttcctggtcggaccggttcgaccggccggtccgatccgagttttaaaactatg 32623011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 185
Target Start/End: Complemental strand, 32382391 - 32382349
Alignment:
Q  143 gaccggttcaaccggccggtccgagccggttttaaaaactatg 185  Q
    ||||||||||||| ||||||||||||||| ||| |||||||||    
T  32382391 gaccggttcaaccagccggtccgagccggattttaaaactatg 32382349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 185
Target Start/End: Complemental strand, 33898225 - 33898152
Alignment:
Q  112 tcgaaccagacaccccaccggttcatggtccgaccggttcaaccggccggtccgagccggttttaaaaactatg 185  Q
    ||||||| | ||||||| ||||||  |||| ||||||| |||||||||||| ||  |||||||| |||||||||    
T  33898225 tcgaaccggccaccccatcggttccaggtcggaccggtccaaccggccggttcggtccggttttcaaaactatg 33898152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 185
Target Start/End: Original strand, 29824080 - 29824120
Alignment:
Q  145 ccggttcaaccggccggtccgagccggttttaaaaactatg 185  Q
    |||||||||||||||||||||||| || ||| |||||||||    
T  29824080 ccggttcaaccggccggtccgagctgggttttaaaactatg 29824120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 111; Significance: 5e-56; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 186 - 308
Target Start/End: Complemental strand, 28521259 - 28521137
Alignment:
Q  186 gatactagtattaaatttgaaataagtctcctcacattctcctatgcctctgcaacactctccccccactgcataagttgctgccacacgccaagtgaat 285  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  28521259 gatactagtattaaatttgaaataagtctcctcacattctcatatgcctctgcaacactctccccccactgcatcagttgctgccacatgccaagtgaat 28521160  T
Q  286 ttccactttatctcttccctatg 308  Q
    |||||||||||||||||||||||    
T  28521159 ttccactttatctcttccctatg 28521137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 23 - 185
Target Start/End: Complemental strand, 40484851 - 40484689
Alignment:
Q  23 aaactggccgattcaccggtttttaccgatttccgccgagccacgccggtttacaccggtttgattgcatggccgatccaataaatagatcgaaccagac 122  Q
    |||| |||||| |||||| |||| |||| |||  |||||| ||| ||||||  |||||| |||| |||||| ||||||||  |  ||| ||||||| | |    
T  40484851 aaaccggccgagtcaccgattttgaccggttttggccgagtcacaccggttctcaccgggttgaatgcatgtccgatccatcatgtagctcgaaccggcc 40484752  T
Q  123 accccaccggttcatggtccgaccggttcaaccggccggtccgagccggttttaaaaactatg 185  Q
    || ||||||||||| |||| ||||||||| |||||||||||||  |||||||| |||||||||    
T  40484751 acaccaccggttcacggtcggaccggttcgaccggccggtccggtccggtttttaaaactatg 40484689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 35 - 185
Target Start/End: Complemental strand, 38209862 - 38209712
Alignment:
Q  35 tcaccggtttttaccgatttccgccgagccacgccggtttacaccggtttgattgcatggccgatccaataaatagatcgaaccagacaccccaccggtt 134  Q
    |||||||||||||||| |||  |||| | ||  |||||| || ||||||| |  |||||||||||||  ||  ||| |||||||    ||||| ||||||    
T  38209862 tcaccggtttttaccggttttggccgggtcattccggttcacgccggtttaaaagcatggccgatccgttagctagctcgaaccgcttacccctccggtt 38209763  T
Q  135 catggtccgaccggttcaaccggccggtccgagccggttttaaaaactatg 185  Q
    | |||||| |||||||| ||||||||||||||||||||||| |||||||||    
T  38209762 cttggtccaaccggttcgaccggccggtccgagccggtttttaaaactatg 38209712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 122 - 185
Target Start/End: Complemental strand, 27678622 - 27678559
Alignment:
Q  122 caccccaccggttcatggtccgaccggttcaaccggccggtccgagccggttttaaaaactatg 185  Q
    |||||||||||||| ||||| |||||||||||||||||||||||  |||||||| |||||||||    
T  27678622 caccccaccggttcctggtcggaccggttcaaccggccggtccggtccggttttcaaaactatg 27678559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 95 - 186
Target Start/End: Complemental strand, 45218847 - 45218756
Alignment:
Q  95 ccgatccaataaatagatcgaaccagacaccccaccggttcatggtccgaccggttcaaccggccggtccgagccggttttaaaaactatgg 186  Q
    |||||||||||| |||||||||||||| || ||||||||||| ||| | ||||||   |||| |||||||||||||| ||| ||||||||||    
T  45218847 ccgatccaataagtagatcgaaccagatacaccaccggttcacggttcaaccggtcggaccgtccggtccgagccgggttttaaaactatgg 45218756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 112 - 185
Target Start/End: Original strand, 3656554 - 3656627
Alignment:
Q  112 tcgaaccagacaccccaccggttcatggtccgaccggttcaaccggccggtccgagccggttttaaaaactatg 185  Q
    ||||||| | || |||||||||||| |||| |||||||||||||||||||||||  || ||||| |||||||||    
T  3656554 tcgaaccggtcatcccaccggttcacggtcggaccggttcaaccggccggtccggtccagttttcaaaactatg 3656627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 129 - 184
Target Start/End: Original strand, 14910917 - 14910972
Alignment:
Q  129 ccggttcatggtccgaccggttcaaccggccggtccgagccggttttaaaaactat 184  Q
    |||||||| |||| ||||||||| |||||||||||||| |||||||| ||||||||    
T  14910917 ccggttcacggtcggaccggttcgaccggccggtccgatccggttttcaaaactat 14910972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 185
Target Start/End: Complemental strand, 5969369 - 5969296
Alignment:
Q  112 tcgaaccagacaccccaccggttcatggtccgaccggttcaaccggccggtccgagccggttttaaaaactatg 185  Q
    ||||||| | ||||||| |||||| ||||| |||| ||||||||||||||||||  |||||||| || ||||||    
T  5969369 tcgaaccggtcaccccatcggttcctggtcggaccagttcaaccggccggtccggtccggttttcaatactatg 5969296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 185
Target Start/End: Complemental strand, 13486508 - 13486455
Alignment:
Q  132 gttcatggtccgaccggttcaaccggccggtccgagccggttttaaaaactatg 185  Q
    |||||||||| |||||||||||||||||||||||  ||| |||| |||||||||    
T  13486508 gttcatggtcggaccggttcaaccggccggtccggtccgcttttcaaaactatg 13486455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 185
Target Start/End: Original strand, 6546497 - 6546537
Alignment:
Q  145 ccggttcaaccggccggtccgagccggttttaaaaactatg 185  Q
    ||||||||||||||||||||||||||| ||| |||||||||    
T  6546497 ccggttcaaccggccggtccgagccgggttttaaaactatg 6546537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 186
Target Start/End: Complemental strand, 8014191 - 8014150
Alignment:
Q  145 ccggttcaaccggccggtccgagccggttttaaaaactatgg 186  Q
    |||||| |||||||||||||||||||| ||| ||||||||||    
T  8014191 ccggttgaaccggccggtccgagccgggttttaaaactatgg 8014150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 134
Target Start/End: Complemental strand, 28761098 - 28760978
Alignment:
Q  14 cggttttataaactggccgattcaccggtttttaccgatttccgccgagccacgccggtttacaccggtttgattgcatggccgatccaataaatagatc 113  Q
    ||||| ||||||| |||||| || |||||||| |||| |||    ||||||| || ||||||||||||| | | |||||| |||||||||| |  || ||    
T  28761098 cggttctataaaccggccgagtcgccggttttgaccggttttaaacgagccatgctggtttacaccggtctaactgcatgaccgatccaatgagaagctc 28760999  T
Q  114 gaaccagacaccccaccggtt 134  Q
    ||||| || |||| |||||||    
T  28760998 gaaccggataccctaccggtt 28760978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 30 - 136
Target Start/End: Original strand, 14886214 - 14886320
Alignment:
Q  30 ccgattcaccggtttttaccgatttccgccgagccacgccggtttacaccggtttgattgcatggccgatccaataaatagatcgaaccagacaccccac 129  Q
    |||||||| ||||||||||||||||||||| || ||||||||||||||||||||  ||||||||| |||||||||||| ||| |||||| | |||| |||    
T  14886214 ccgattcatcggtttttaccgatttccgccaagtcacgccggtttacaccggttcaattgcatggtcgatccaataaaaagaccgaaccggccaccgcac 14886313  T
Q  130 cggttca 136  Q
    |||||||    
T  14886314 cggttca 14886320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 6 - 185
Target Start/End: Complemental strand, 37314406 - 37314227
Alignment:
Q  6 aaccggtccggttttataaactggccgattcaccggtttttaccgatttccgccgagccacgccggtttacaccggtttgattgcatggccgatccaata 105  Q
    ||||||||||||||   ||||  |||| ||||||||||||| | || ||   ||||  |||||||||| |  ||||||||||| |||| |||||||  |     
T  37314406 aaccggtccggtttgtcaaacccgccggttcaccggtttttcctgagtttgaccgaatcacgccggttcagtccggtttgattacatgaccgatccgttt 37314307  T
Q  106 aatagatcgaaccagacaccccaccggttcatggtccgaccggttcaaccggccggtccgagccggttttaaaaactatg 185  Q
    |  |  ||||||| | |||||||||||||| ||||| |||||||||||||||||||||||  |||||||| |||||||||    
T  37314306 atcaactcgaaccggtcaccccaccggttcctggtcggaccggttcaaccggccggtccggtccggttttcaaaactatg 37314227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 120 - 186
Target Start/End: Complemental strand, 43869027 - 43868961
Alignment:
Q  120 gacaccccaccggttcatggtccgaccggttcaaccggccggtccgagccggttttaaaaactatgg 186  Q
    ||||| ||||||||||| | | |||||||| ||||||||||||||||||||||||| ||||||||||    
T  43869027 gacacaccaccggttcacgattcgaccggtccaaccggccggtccgagccggtttttaaaactatgg 43868961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 57 - 185
Target Start/End: Original strand, 12341111 - 12341239
Alignment:
Q  57 gccgagccacgccggtttacaccggtttgattgcatggccgatccaataaatagatcgaaccagacaccccaccggttcatggtccgaccggttcaaccg 156  Q
    |||||| ||| |||||| || ||||||  | ||||||||||||||| ||  ||  |||||||    ||||||||| |||| ||||| |||||||| ||||    
T  12341111 gccgagtcactccggttcacgccggttcaaatgcatggccgatccattagttaactcgaaccgcttaccccaccgcttcacggtccaaccggttcgaccg 12341210  T
Q  157 gccggtccgagccggttttaaaaactatg 185  Q
    ||||||||||||||| ||| |||||||||    
T  12341211 gccggtccgagccgggttttaaaactatg 12341239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 185
Target Start/End: Original strand, 18541452 - 18541561
Alignment:
Q  76 caccggtttgattgcatggccgatccaataaatagatcgaaccagacaccccaccggttcatggtccgaccggttcaaccggccggtccgagccggtttt 175  Q
    ||||||||| | |||||| ||||||||||| ||  | |||||| |  ||||| |||||||| |||| ||| ||||| |||||||||||||  ||||||||    
T  18541452 caccggtttaaatgcatgaccgatccaatatatcaaccgaaccggttacccctccggttcacggtcggactggttcgaccggccggtccggtccggtttt 18541551  T
Q  176 aaaaactatg 185  Q
     |||||||||    
T  18541552 caaaactatg 18541561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 137 - 189
Target Start/End: Complemental strand, 10809820 - 10809768
Alignment:
Q  137 tggtccgaccggttcaaccggccggtccgagccggttttaaaaactatggata 189  Q
    ||||| |||||||| |||||||||||||||| ||||||| |||||||||||||    
T  10809820 tggtcggaccggttgaaccggccggtccgagtcggtttttaaaactatggata 10809768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 187
Target Start/End: Original strand, 7502049 - 7502230
Alignment:
Q  6 aaccggtccggttttataaactggccgattcaccggtttttaccgatttccgccgagccacgccggtttacaccggtttgattgcatggccgatccaata 105  Q
    ||||||||||||||  |||||  |||| |||||||||||| ||||  ||  || |||  || |||||| |  ||||||||||| || |||||||||   |    
T  7502049 aaccggtccggtttgttaaacccgccggttcaccggttttcaccgggtttggcagagttacaccggttcaggccggtttgattacacggccgatccgtca 7502148  T
Q  106 aatagatcgaaccagacaccccaccggttcatggtccgaccggttcaaccggccggtccgagccggttttaaaaactatgga 187  Q
    |  |  ||||||| |  |||| |||||||| ||||| |||||||| ||||||||||||||  |||| ||| |||||||||||    
T  7502149 agcaactcgaaccggttaccctaccggttcctggtcggaccggttgaaccggccggtccggtccgggtttcaaaactatgga 7502230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 142 - 185
Target Start/End: Complemental strand, 12364704 - 12364661
Alignment:
Q  142 cgaccggttcaaccggccggtccgagccggttttaaaaactatg 185  Q
    |||||||| ||||||||||||||||||||| ||| |||||||||    
T  12364704 cgaccggtccaaccggccggtccgagccgggttttaaaactatg 12364661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 186
Target Start/End: Original strand, 3989733 - 3989807
Alignment:
Q  112 tcgaaccagacaccccaccggttcatggtccgaccggttcaaccggccggtccgagccggttttaaaaactatgg 186  Q
    ||||||| ||||  ||||||||||  |||| ||||||| | |||||||||||||  |||||||| ||||||||||    
T  3989733 tcgaaccggacataccaccggttcccggtctgaccggtccgaccggccggtccggtccggtttttaaaactatgg 3989807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 186
Target Start/End: Complemental strand, 6064888 - 6064830
Alignment:
Q  128 accggttcatggtccgaccggttcaaccggccggtccgagccggttttaaaaactatgg 186  Q
    ||||||||  |||| ||||||||| |||| ||| |||||||||||||| ||||||||||    
T  6064888 accggttcccggtcggaccggttcgaccgaccgttccgagccggtttttaaaactatgg 6064830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 185
Target Start/End: Original strand, 19882766 - 19882807
Alignment:
Q  144 accggttcaaccggccggtccgagccggttttaaaaactatg 185  Q
    ||||||| |||||||||||||||||||| ||| |||||||||    
T  19882766 accggttgaaccggccggtccgagccgggttttaaaactatg 19882807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 185
Target Start/End: Original strand, 23251787 - 23251828
Alignment:
Q  144 accggttcaaccggccggtccgagccggttttaaaaactatg 185  Q
    ||||||| |||||||||||||||||||| ||| |||||||||    
T  23251787 accggttgaaccggccggtccgagccgggttttaaaactatg 23251828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 3 - 98
Target Start/End: Original strand, 52602 - 52697
Alignment:
Q  3 ttgaaccggtccggttttataaactggccgattcaccggtttttaccgatttccgccgagccacgccggtttacaccggtttgattgcatggccga 98  Q
    |||||||| ||||||| |  |||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||  |||||||| ||||    
T  52602 ttgaaccgctccggttctgaaaaccggccgattcaccggtttttaccggtttccgccgagtcacgccggtttacaccggttcaattgcatgaccga 52697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 122 - 185
Target Start/End: Original strand, 52704 - 52767
Alignment:
Q  122 caccccaccggttcatggtccgaccggttcaaccggccggtccgagccggttttaaaaactatg 185  Q
    ||||||| ||||||| |||| ||||||||||||||| |||||||| |||||||| |||||||||    
T  52704 caccccatcggttcacggtcggaccggttcaaccggtcggtccgatccggtttttaaaactatg 52767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 6 - 185
Target Start/End: Original strand, 44258408 - 44258587
Alignment:
Q  6 aaccggtccggttttataaactggccgattcaccggtttttaccgatttccgccgagccacgccggtttacaccggtttgattgcatggccgatccaata 105  Q
    ||||||||||||||   ||||  |||| ||||||||||||| |||| ||   ||||| |||||| ||| |  ||||||||||| |||| |||||||| |     
T  44258408 aaccggtccggtttgtcaaacccgccggttcaccggtttttcccgagtttgaccgagtcacgccagttcagtccggtttgattacatgaccgatccattt 44258507  T
Q  106 aatagatcgaaccagacaccccaccggttcatggtccgaccggttcaaccggccggtccgagccggttttaaaaactatg 185  Q
    |  |  ||||||| | |||||||||||||| ||||| ||||||||||||||| |||||||  ||| |||| |||||||||    
T  44258508 atcaactcgaaccggtcaccccaccggttcctggtcggaccggttcaaccggacggtccggtccgattttcaaaactatg 44258587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 23 - 185
Target Start/End: Original strand, 28235605 - 28235767
Alignment:
Q  23 aaactggccgattcaccggtttttaccgatttccgccgagccacgccggtttacaccggtttgattgcatggccgatccaataaatagatcgaaccagac 122  Q
    |||| |||||| |||||| |||| |||| |||  |||||| ||| ||||||  |||||| |||| |||||| ||||||||  |  ||| ||||||| | |    
T  28235605 aaaccggccgagtcaccgattttgaccggttttggccgagtcacaccggttctcaccgggttgaatgcatgtccgatccatcatgtagctcgaaccggcc 28235704  T
Q  123 accccaccggttcatggtccgaccggttcaaccggccggtccgagccggttttaaaaactatg 185  Q
    || |||||| |||| |||| ||||||||| |||||||||||||  |||||||| |||||||||    
T  28235705 acaccaccgattcacggtcggaccggttcgaccggccggtccggtccggtttttaaaactatg 28235767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 127 - 185
Target Start/End: Original strand, 32364973 - 32365031
Alignment:
Q  127 caccggttcatggtccgaccggttcaaccggccggtccgagccggttttaaaaactatg 185  Q
    |||||||||| |||| ||||||||| ||||||||||||||||||||||| |||||||||    
T  32364973 caccggttcacggtcggaccggttcgaccggccggtccgagccggtttttaaaactatg 32365031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 112 - 186
Target Start/End: Complemental strand, 27414406 - 27414333
Alignment:
Q  112 tcgaaccagacaccccaccggttcatggtccgaccggttcaaccggccggtccgagccggttttaaaaactatgg 186  Q
    ||||||| | ||||||||||||||| |||| |||||||||||||||||||| ||| | |||||| ||||||||||    
T  27414406 tcgaaccggccaccccaccggttca-ggtcggaccggttcaaccggccggttcgatctggttttcaaaactatgg 27414333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 125 - 187
Target Start/End: Original strand, 33690862 - 33690924
Alignment:
Q  125 cccaccggttcatggtccgaccggttcaaccggccggtccgagccggttttaaaaactatgga 187  Q
    ||||||||||| ||||| ||||||||  ||||||||||||||| ||||||| |||||||||||    
T  33690862 cccaccggttcctggtcggaccggtttgaccggccggtccgagacggtttttaaaactatgga 33690924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 123 - 185
Target Start/End: Original strand, 52586091 - 52586153
Alignment:
Q  123 accccaccggttcatggtccgaccggttcaaccggccggtccgagccggttttaaaaactatg 185  Q
    ||||| ||||||| |||||| |||||||| ||||||||||||||| ||||||| |||||||||    
T  52586091 acccctccggttcttggtccaaccggttcgaccggccggtccgagtcggtttttaaaactatg 52586153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 125 - 185
Target Start/End: Original strand, 24639595 - 24639655
Alignment:
Q  125 cccaccggttcatggtccgaccggttcaaccggccggtccgagccggttttaaaaactatg 185  Q
    |||||||||||  |||  ||||||||| ||||||||||||||||||||||| |||||||||    
T  24639595 cccaccggttccaggttggaccggttcgaccggccggtccgagccggtttttaaaactatg 24639655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 165
Target Start/End: Original strand, 18033470 - 18033567
Alignment:
Q  68 ccggtttacaccggtttgattgcatggccgatccaataaatagatcgaaccag-acaccccaccggttcatggtccgaccggttcaaccggccggtccg 165  Q
    ||||||| | ||||||| ||||||||||||||||||||||  | ||||||| | ||| ||| ||| |||| |||| ||||||||| |||||||||||||    
T  18033470 ccggtttgcgccggtttaattgcatggccgatccaataaaaggctcgaaccggcaca-ccctccgattcacggtcggaccggttcgaccggccggtccg 18033567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 185
Target Start/End: Complemental strand, 50358021 - 50357903
Alignment:
Q  67 gccggtttacaccggtttgattgcatggccgatccaataaatagatcgaaccagacaccccaccggttcatggtccgaccggttcaaccggccggtccga 166  Q
    ||||||| || ||||||| |  |||||||||||||  ||  ||| ||||||||   ||||| |||||||  ||||| |||| ||| ||||||||||||||    
T  50358021 gccggttcactccggtttaaaagcatggccgatccgttagctagttcgaaccacttacccctccggttctcggtccaaccgattcgaccggccggtccga 50357922  T
Q  167 gccggttttaaaaactatg 185  Q
    ||||||||| |||| ||||    
T  50357921 gccggtttttaaaagtatg 50357903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 186
Target Start/End: Complemental strand, 37034274 - 37034146
Alignment:
Q  58 ccgagccacgccggtttacaccggtttgattgcatggccgatccaataaatagatcgaaccagacaccccaccggttcatggtccgaccggttcaaccgg 157  Q
    |||||||| ||||||||  |||||||  |||||||| ||||||  ||||| |  || |||| || || ||||||||| | ||||| ||||||   |||||    
T  37034274 ccgagccaagccggttttaaccggttcaattgcatgaccgatctgataaacaactcaaaccggatacaccaccggtttacggtccaaccggtcagaccgg 37034175  T
Q  158 ccggtccgagccggttttaaaaactatgg 186  Q
    ||||||| |||||| ||| ||||||||||    
T  37034174 ccggtccaagccgggttttaaaactatgg 37034146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 58 - 185
Target Start/End: Complemental strand, 5384138 - 5384011
Alignment:
Q  58 ccgagccacgccggtttacaccggtttgattgcatggccgatccaataaatagatcgaaccagacaccccaccggttcatggtccgaccggttcaaccgg 157  Q
    |||||||| ||||||||  |||||||  |||||||| || |||  ||||| || |||||||    || ||| ||||||| ||||| ||||||   |||||    
T  5384138 ccgagccaagccggttttaaccggttcaattgcatgaccaatctgataaacagctcgaaccgagtacaccaacggttcacggtccaaccggtcggaccgg 5384039  T
Q  158 ccggtccgagccggttttaaaaactatg 185  Q
    |||||||||||||| ||| |||||||||    
T  5384038 ccggtccgagccgggttttaaaactatg 5384011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 67 - 186
Target Start/End: Original strand, 12793543 - 12793662
Alignment:
Q  67 gccggtttacaccggtttgattgcatggccgatccaataaatagatcgaaccagacaccccaccggttcatggtccgaccggttcaaccggccggtccga 166  Q
    |||||||  ||||||||| | |||||| |||||||||||  |  | ||||||||  ||||| || ||||| |||| ||||||||| || | ||||||||     
T  12793543 gccggttctcaccggtttaaatgcatgaccgatccaatatgtcaaccgaaccagttacccctccagttcacggtcggaccggttcgactgaccggtccgg 12793642  T
Q  167 gccggttttaaaaactatgg 186  Q
     |||||||| ||||||||||    
T  12793643 tccggttttcaaaactatgg 12793662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 78 - 164
Target Start/End: Original strand, 20726793 - 20726879
Alignment:
Q  78 ccggtttgattgcatggccgatccaataaatagatcgaaccagacac-cccaccggttcatggtccgaccggttcaaccggccggtcc 164  Q
    ||||||| ||| |||||||||||| |||||  | ||||||| ||||| ||| |||||||| |||| ||||||||| ||||||||||||    
T  20726793 ccggtttaattacatggccgatccgataaaaggctcgaacc-gacacaccctccggttcacggtcggaccggttcgaccggccggtcc 20726879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 185
Target Start/End: Complemental strand, 19553385 - 19553323
Alignment:
Q  123 accccaccggttcatggtccgaccggttcaaccggccggtccgagccggttttaaaaactatg 185  Q
    ||||| || |||| |||||| |||||||| |||||||||||||| || ||||| |||||||||    
T  19553385 acccctccagttcttggtccaaccggttcgaccggccggtccgaaccagtttttaaaactatg 19553323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 103
Target Start/End: Original strand, 45484718 - 45484807
Alignment:
Q  14 cggttttataaactggccgattcaccggtttttaccgatttccgccgagccacgccggtttacaccggtttgattgcatggccgatccaa 103  Q
    ||||| ||||||| |||||| ||||||||||| |||  |||    ||||||| |||||||||||||||| | | |||||| |||||||||    
T  45484718 cggttctataaaccggccgagtcaccggttttgaccagttttaaacgagccatgccggtttacaccggtctaactgcatgaccgatccaa 45484807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 183
Target Start/End: Original strand, 37670719 - 37670807
Alignment:
Q  95 ccgatccaataaatagatcgaaccagacaccccaccggttcatggtccgaccggttcaaccggccggtccgagccggttttaaaaacta 183  Q
    ||||||||| |  |||| |||||| ||||| ||||||||||| ||| |||||||| | | ||||||||  |||| |||||| |||||||    
T  37670719 ccgatccaaaagttagaccgaaccggacacaccaccggttcacggttcgaccggtccgatcggccggtttgagctggtttttaaaacta 37670807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 35 - 185
Target Start/End: Complemental strand, 28739 - 28589
Alignment:
Q  35 tcaccggtttttaccgatttccgccgagccacgccggtttacaccggtttgattgcatggccgatccaataaatagatcgaaccagacaccccaccggtt 134  Q
    ||||| |||||||||| |||  |||| | ||  |||||| || ||||||| |  |||||||||||||  ||  ||| ||||||||   ||||| ||||||    
T  28739 tcaccagtttttaccggttttggccgggtcattccggttcacgccggtttaaaagcatggccgatccgttacctagctcgaaccacttacccctccggtt 28640  T
Q  135 catggtccgaccggttcaaccggccggtccgagccggttttaaaaactatg 185  Q
    | |||||| |||||||| ||||||||||||||||| ||||| |||||||||    
T  28639 cttggtccaaccggttcgaccggccggtccgagccagtttttaaaactatg 28589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 122 - 186
Target Start/End: Complemental strand, 37599249 - 37599185
Alignment:
Q  122 caccccaccggttcatggtccgaccggttcaaccggccggtccgagccggttttaaaaactatgg 186  Q
    |||||||||||||| ||||| |||||||||||||||||||||| | ||| |||| ||||||||||    
T  37599249 caccccaccggttcctggtcggaccggttcaaccggccggtccaatccgattttcaaaactatgg 37599185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 125 - 185
Target Start/End: Original strand, 42908678 - 42908738
Alignment:
Q  125 cccaccggttcatggtccgaccggttcaaccggccggtccgagccggttttaaaaactatg 185  Q
    |||||||||||| |||| ||||||||| |||||||||||||||| |||||| |||||||||    
T  42908678 cccaccggttcacggtcggaccggttcgaccggccggtccgagctggtttttaaaactatg 42908738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 127 - 185
Target Start/End: Complemental strand, 51536432 - 51536374
Alignment:
Q  127 caccggttcatggtccgaccggttcaaccggccggtccgagccggttttaaaaactatg 185  Q
    |||||||||| |||| ||||||||| |||||||||||||| |||||||| |||||||||    
T  51536432 caccggttcacggtcggaccggttcgaccggccggtccgatccggtttttaaaactatg 51536374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 131 - 186
Target Start/End: Original strand, 29728805 - 29728860
Alignment:
Q  131 ggttcatggtccgaccggttcaaccggccggtccgagccggttttaaaaactatgg 186  Q
    |||||| |||| ||||||||| ||||||||||||||||| ||||| ||||||||||    
T  29728805 ggttcacggtcggaccggttcgaccggccggtccgagccagtttttaaaactatgg 29728860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 78 - 165
Target Start/End: Original strand, 39851382 - 39851469
Alignment:
Q  78 ccggtttgattgcatggccgatccaataaatagatcgaaccagacaccccaccggttcatggtccgaccggttcaaccggccggtccg 165  Q
    |||||||||||||||| |||||||  | |  |  ||||||| | |||| |||||||||| |||| |||||||||||||||||||||||    
T  39851382 ccggtttgattgcatgaccgatccgtttatcaactcgaaccggtcacctcaccggttcacggtcggaccggttcaaccggccggtccg 39851469  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 185
Target Start/End: Complemental strand, 2848556 - 2848494
Alignment:
Q  123 accccaccggttcatggtccgaccggttcaaccggccggtccgagccggttttaaaaactatg 185  Q
    ||||| |||||||| |||| ||||||||| |||||||||||||  |||||||| |||||||||    
T  2848556 acccctccggttcacggtcggaccggttcgaccggccggtccggtccggtttttaaaactatg 2848494  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 184
Target Start/End: Complemental strand, 11675727 - 11675549
Alignment:
Q  6 aaccggtccggttttataaactggccgattcaccggtttttaccgatttccgccgagccacgccggtttacaccggtttgattgcatggccgatccaata 105  Q
    ||||||||||||||   ||||  |||| ||||||||||||| | || ||   ||||| |||||||||| |  ||| ||||||| |||| |||||||  |     
T  11675727 aaccggtccggtttgtcaaacccgccggttcaccggtttttcctgagtttgaccgagtcacgccggttcattccgatttgattacatgaccgatccgttt 11675628  T
Q  106 aatagatcgaaccagacaccccaccggttcatggtccgaccggttcaaccggccggtccgagccggttttaaaaactat 184  Q
    |  |  ||||||| | |||||||||||||| ||||| ||||| ||||||||| |||||||  ||| |||| ||||||||    
T  11675627 atcaactcgaaccggtcaccccaccggttcctggtcggaccgattcaaccggtcggtccggtccgattttcaaaactat 11675549  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 182
Target Start/End: Original strand, 15101427 - 15101471
Alignment:
Q  138 ggtccgaccggttcaaccggccggtccgagccggttttaaaaact 182  Q
    |||| ||||||||| ||||||||||||||||||||||| ||||||    
T  15101427 ggtcggaccggttcgaccggccggtccgagccggttttcaaaact 15101471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 185
Target Start/End: Complemental strand, 16056862 - 16056802
Alignment:
Q  125 cccaccggttcatggtccgaccggttcaaccggccggtccgagccggttttaaaaactatg 185  Q
    |||| ||||||  |||| ||||||||| ||| ||||||||||||||||||| |||||||||    
T  16056862 cccatcggttcccggtcggaccggttcgaccagccggtccgagccggtttttaaaactatg 16056802  T

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Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 188
Target Start/End: Complemental strand, 30464554 - 30464494
Alignment:
Q  128 accggttcatggtccgaccggttcaaccggccggtccgagccggttttaaaaactatggat 188  Q
    |||||||| ||||| |||||||||||||||||||||||  | | |||| ||||||||||||    
T  30464554 accggttcctggtcggaccggttcaaccggccggtccggtctgattttcaaaactatggat 30464494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 123 - 186
Target Start/End: Complemental strand, 10258376 - 10258313
Alignment:
Q  123 accccaccggttcatggtccgaccggttcaaccggccggtccgagccggttttaaaaactatgg 186  Q
    ||||| |||||||| |||||||| ||||| | |||||||||||  |||||||| ||||||||||    
T  10258376 acccctccggttcacggtccgactggttcgatcggccggtccggtccggttttcaaaactatgg 10258313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 185
Target Start/End: Complemental strand, 42216523 - 42216476
Alignment:
Q  138 ggtccgaccggttcaaccggccggtccgagccggttttaaaaactatg 185  Q
    |||| ||||||||| ||||||||||| ||||||||||| |||||||||    
T  42216523 ggtcggaccggttcgaccggccggtctgagccggtttttaaaactatg 42216476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 58 - 185
Target Start/End: Complemental strand, 52403768 - 52403641
Alignment:
Q  58 ccgagccacgccggtttacaccggtttgattgcatggccgatccaataaatagatcgaaccagacaccccaccggttcatggtccgaccggttcaaccgg 157  Q
    |||||||| |||| |||  |||||||  |||||||| ||||||  ||||| || | ||||| || || ||||||||||| ||| | ||||||   |||||    
T  52403768 ccgagccaagccgattttaaccggttcaattgcatgaccgatctgataaacagcttgaaccggatacaccaccggttcacggttcaaccggtcggaccgg 52403669  T
Q  158 ccggtccgagccggttttaaaaactatg 185  Q
    || ||||||||||| ||| |||||||||    
T  52403668 ccagtccgagccgggttttaaaactatg 52403641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 185
Target Start/End: Complemental strand, 23241361 - 23241319
Alignment:
Q  143 gaccggttcaaccggccggtccgagccggttttaaaaactatg 185  Q
    |||||||||||||||||||||||  |||||||| |||||||||    
T  23241361 gaccggttcaaccggccggtccggtccggttttcaaaactatg 23241319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 185
Target Start/End: Original strand, 33635758 - 33635876
Alignment:
Q  67 gccggtttacaccggtttgattgcatggccgatccaataaatagatcgaaccagacaccccaccggttcatggtccgaccggttcaaccggccggtccga 166  Q
    |||||||  ||||||||| | |||||| |||||||||||  |  | |||||| |  ||||| ||| |||| |||| ||||||||| |||||||| ||||     
T  33635758 gccggttctcaccggtttaaatgcatgaccgatccaatatgtcaaccgaaccggttacccctccgattcacggtcggaccggttcgaccggccgatccgg 33635857  T
Q  167 gccggttttaaaaactatg 185  Q
     |||||||| |||||||||    
T  33635858 tccggttttcaaaactatg 33635876  T

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Target: scaffold0332 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0332
Description:

Target: scaffold0332; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 59 - 185
Target Start/End: Complemental strand, 1771 - 1645
Alignment:
Q  59 cgagccacgccggtttacaccggtttgattgcatggccgatccaataaatagatcgaaccagacaccccaccggttcatggtccgaccggttcaaccggc 158  Q
    |||| ||||||||||  |||||||| || ||||   ||||||||| || ||||||||||  ||||| ||||||||||| ||| | ||||||   ||||||    
T  1771 cgagtcacgccggttctcaccggttcgactgcacaaccgatccaacaagtagatcgaactggacacaccaccggttcacggttcaaccggtctgaccggc 1672  T
Q  159 cggtccgagccggttttaaaaactatg 185  Q
     ||||||| |||||||| |||||||||    
T  1671 aggtccgaaccggtttttaaaactatg 1645  T

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Target: scaffold0070 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 112 - 185
Target Start/End: Original strand, 13416 - 13489
Alignment:
Q  112 tcgaaccagacaccccaccggttcatggtccgaccggttcaaccggccggtccgagccggttttaaaaactatg 185  Q
    ||||||| | |||||||||| ||| ||||| |||||||||||||||||||| ||  |||||||| |||||||||    
T  13416 tcgaaccggtcaccccaccgcttcctggtcggaccggttcaaccggccggttcggtccggttttcaaaactatg 13489  T

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Target: scaffold0242 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0242
Description:

Target: scaffold0242; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 130 - 165
Target Start/End: Complemental strand, 17012 - 16977
Alignment:
Q  130 cggttcatggtccgaccggttcaaccggccggtccg 165  Q
    ||||||||||||||||||||||||||||||||||||    
T  17012 cggttcatggtccgaccggttcaaccggccggtccg 16977  T

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Target: scaffold0001 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 68 - 186
Target Start/End: Original strand, 138353 - 138471
Alignment:
Q  68 ccggtttacaccggtttgattgcatggccgatccaataaatagatcgaaccagacac-cccaccggttcatggtccgaccggttcaaccggccggtccga 166  Q
    |||||||| ||||||||  |||||||||||||| || |  | | ||||||| ||||  |||| ||||||  |||| ||||||||| ||| ||||||||||    
T  138353 ccggtttataccggtttagttgcatggccgatctaacatttggctcgaacc-gacatacccaacggttccaggtcggaccggttcgaccagccggtccga 138451  T
Q  167 gccggttttaaaaactatgg 186  Q
    ||||||||| ||||||||||    
T  138452 gccggttttgaaaactatgg 138471  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 185
Target Start/End: Complemental strand, 22350533 - 22350471
Alignment:
Q  123 accccaccggttcatggtccgaccggttcaaccggccggtccgagccggttttaaaaactatg 185  Q
    ||||| |||||||| |||| ||||||||| |||||||||||||  |||||||| |||||||||    
T  22350533 acccctccggttcacggtcggaccggttcgaccggccggtccggtccggttttcaaaactatg 22350471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 185
Target Start/End: Complemental strand, 9367559 - 9367517
Alignment:
Q  143 gaccggttcaaccggccggtccgagccggttttaaaaactatg 185  Q
    ||||||||||||||||||||||||||  ||||| |||||||||    
T  9367559 gaccggttcaaccggccggtccgagctagtttttaaaactatg 9367517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 185
Target Start/End: Original strand, 11466197 - 11466239
Alignment:
Q  143 gaccggttcaaccggccggtccgagccggttttaaaaactatg 185  Q
    |||||||||||||||||||||||  |||||||| |||||||||    
T  11466197 gaccggttcaaccggccggtccggtccggttttcaaaactatg 11466239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 185
Target Start/End: Complemental strand, 21528161 - 21528099
Alignment:
Q  123 accccaccggttcatggtccgaccggttcaaccggccggtccgagccggttttaaaaactatg 185  Q
    |||| |||||||| ||||| |||||||| ||||||||||||||  |||| ||| |||||||||    
T  21528161 accctaccggttcctggtcggaccggttgaaccggccggtccggtccgggtttcaaaactatg 21528099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 185
Target Start/End: Original strand, 8610 - 8727
Alignment:
Q  68 ccggtttacaccggtttgattgcatggccgatccaataaatagatcgaaccagacaccccaccggttcatggtccgaccggttcaaccggccggtccgag 167  Q
    |||||||| |||||||| ||||||||||||||| || |  | | ||||||  |    |||| ||||||  |||| || |||||| |||||||||||||||    
T  8610 ccggtttataccggtttaattgcatggccgatctaacatttggctcgaacgggcatacccatcggttccaggtcggatcggttcgaccggccggtccgag 8709  T
Q  168 ccggttttaaaaactatg 185  Q
    |||||||| |||||||||    
T  8710 ccggttttgaaaactatg 8727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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