View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17326_high_28 (Length: 306)
Name: NF17326_high_28
Description: NF17326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17326_high_28 |
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Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 6630320 - 6630032
Alignment:
| Q |
1 |
atcaaagggtaatttcttcatttgaaagaaatctattcattaatataaaatgttgacaattgattttaaacaaatttcttcannnnnnnactctcttgat |
100 |
Q |
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| T |
6630320 |
atcaaagggtaatttcttcatttaaaggaaatctattcattaatataaaatgttgacgattgattttaaacaaatttcttcatttttttactctctcgat |
6630221 |
T |
|
| Q |
101 |
ccgttttaaaagagaggtactaagagaatattttgggggttagaggtttgcatttttt-atggtgttttgggtaaatatcctaattctaaaattgacacc |
199 |
Q |
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| T |
6630220 |
ccgttttaaaagagaggtattaagagaatattttgggggttagaggtttgcatttttttatggtgttttgggtaaatatcctaattctaaaattgacacc |
6630121 |
T |
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| Q |
200 |
aatagagttgagatggagaggattttcaacatggagatgaatattgaggcgtcatttaatgaagataggccaacgctgattgacaaact |
288 |
Q |
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| T |
6630120 |
aatagagttgagatggagaggattttcaacatggagatgaatattgaggcgtcatttaatgaagataggccaacgctgattaacaaact |
6630032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 6803880 - 6803592
Alignment:
| Q |
1 |
atcaaagggtaatttcttcatttgaaagaaatctattcattaatataaaatgttgacaattgattttaaacaaatttcttcannnnnnnactctcttgat |
100 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||| ||| |
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| T |
6803880 |
atcaaagggtaatttcttcatttgatggaaatctattcattaatataaaatgttggcgattgattttaaacaaatttcttcatttttttactctctcgat |
6803781 |
T |
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| Q |
101 |
ccgttttaaaagagaggtactaagagaatattttgggggttagaggtttgcatttttt-atggtgttttgggtaaatatcctaattctaaaattgacacc |
199 |
Q |
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| T |
6803780 |
ccgttttaaaagagaggtattaagagaatattttgggggttagaggtttgcatttttttatggtgttttgggtaaatatcctaattctaaaattgacacc |
6803681 |
T |
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| Q |
200 |
aatagagttgagatggagaggattttcaacatggagatgaatattgaggcgtcatttaatgaagataggccaacgctgattgacaaact |
288 |
Q |
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| T |
6803680 |
aatagagttgagatggagaggattttcaacatgggaatgaatattgaggtgtcatttaatgaagataggccaacgctgattgacaaact |
6803592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 185
Target Start/End: Complemental strand, 6809705 - 6809621
Alignment:
| Q |
103 |
gttttaaaagagaggtactaagagaatattttgggggttagaggtttgcatt--ttttatggtgttttgggtaaatatcctaatt |
185 |
Q |
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| T |
6809705 |
gttttaaaagagacgtgttaagaggaaattttgggggttagagctttgcattttttttatggtgttttcggtcaatgtcctaatt |
6809621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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