View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17326_high_29 (Length: 302)
Name: NF17326_high_29
Description: NF17326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17326_high_29 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 27635523 - 27635242
Alignment:
| Q |
1 |
agatcgttcgtcgtagctgcattaataatttaatatataaacatgtgattgtataataaaacttaataatgggagcactcttaaaaatagtcgactacca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27635523 |
agatcgttcgtcgtagctgcattaataatttaatatataaacatgtgattgtataataaaacttaataatgggagcactcttaaaaatagtcgactacca |
27635424 |
T |
|
| Q |
101 |
agcacagaaactcactgacctttgcatttcaacatattcaatgtcaccggaaaatgaaaagaactcctttaggtcttgttcagatgctcccaaggaaaca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27635423 |
agcacagaaactcactgacctttgcatttcaacatattcaatgtcaccggaaaatgaaaagaactcctttaggtcttgttcagatgctcccaaggaaaca |
27635324 |
T |
|
| Q |
201 |
ttatcgacttttatagttttgacctgcaaataaaatacatgtaacactgaacgtttaaaaccttgtggagaacccatatctg |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27635323 |
ttatcgacttttatagttttgacctgcaaataaaatacatgtaacactgaacgtttaaaaccttgtggagaacccatatctg |
27635242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University