View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17326_high_38 (Length: 268)
Name: NF17326_high_38
Description: NF17326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17326_high_38 |
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Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 5268903 - 5269171
Alignment:
| Q |
1 |
agttttcgacttcgataaaaccataattgattgtgatagtgataattgggttcttgatgaattaggtttcaccgatttgttcaatcaactccttcccact |
100 |
Q |
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| T |
5268903 |
agttttcgacttcgataaaaccataattgattgtgatagtgataattgggttgttgatgaattaggtttcaccgatttgttcaatcaactccttcccact |
5269002 |
T |
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| Q |
101 |
atgcctttcaattctctcatggtatgtttttcactcttttcatatgctctgtttttacaaatactctgtttttcattcactcgatattctgaat------ |
194 |
Q |
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| T |
5269003 |
atgcctttcaattctctcatggtatgtttttcactcttttcatatgctctgtttttaaaaatactctgtttttcattcactcgatattctgaatattata |
5269102 |
T |
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| Q |
195 |
-------------attaacttgtgttttggttttggaaatacaggacagaatgatgatggagcttcatt |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5269103 |
tttataacaaataattaacttgtgttttggttttggaaatacaggacagaatgatgatggagcttcatt |
5269171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 5249668 - 5249798
Alignment:
| Q |
1 |
agttttcgacttcgataaaaccataattgattgtgatagtgataattgggttcttgatgaattaggtttcaccgatttgttcaatcaactccttcccact |
100 |
Q |
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| T |
5249668 |
agtttttgattttgataaaaccataattgattgtgacagtgataattgggttattgatgaattgggtttcactgatttgttcaatcagctccttcccact |
5249767 |
T |
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| Q |
101 |
atgcctttcaattctctcatggtatgttttt |
131 |
Q |
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| T |
5249768 |
atgccttggaattctctcatggtatgttttt |
5249798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 3 - 145
Target Start/End: Complemental strand, 5272878 - 5272736
Alignment:
| Q |
3 |
ttttcgacttcgataaaaccataattgattgtgatagtgataattgggttcttgatgaattaggtttcaccgatttgttcaatcaactccttcccactat |
102 |
Q |
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| T |
5272878 |
tttttgactttgacaaaaccatcattgattgtgatagtgataattggttgattgatgaattgggtttcaccgatttgttcaatcagctccttcccacaat |
5272779 |
T |
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| Q |
103 |
gcctttcaattctctcatggtatgtttttcactcttttcatat |
145 |
Q |
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| T |
5272778 |
gccttggaattccgtcatggtatgttttttattctcttcatat |
5272736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 17 - 179
Target Start/End: Complemental strand, 5276835 - 5276673
Alignment:
| Q |
17 |
aaaaccataattgattgtgatagtgataattgggttcttgatgaattaggtttcaccgatttgttcaatcaactccttcccactatgcctttcaattctc |
116 |
Q |
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| T |
5276835 |
aaaacgatcattgattgtgacagtgataattggttgattgatgaattgggtttcactgatttgttcaatcaactccttcctacaatgccttggaattctg |
5276736 |
T |
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| Q |
117 |
tcatggtatgtttttcactcttttcatatgctctgtttttacaaatactctgtttttcattca |
179 |
Q |
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| T |
5276735 |
ttatggtatgctttttattcctttcatgtgctctgttttgtaaaatactctgtttttcattca |
5276673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 14 - 113
Target Start/End: Original strand, 19569150 - 19569249
Alignment:
| Q |
14 |
gataaaaccataattgattgtgatagtgataattgggttcttgatgaattaggtttcaccgatttgttcaatcaactccttcccactatgcctttcaatt |
113 |
Q |
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| T |
19569150 |
gataaaaccttaattgattgtgatagtgataattgggatgttgatgaattaggtttcatcgatttgttcaatcaactccttcttactatgcctttcaatt |
19569249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 5e-25; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 2 - 124
Target Start/End: Complemental strand, 26315844 - 26315722
Alignment:
| Q |
2 |
gttttcgacttcgataaaaccataattgattgtgatagtgataattgggttcttgatgaattaggtttcaccgatttgttcaatcaactccttcccacta |
101 |
Q |
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||||||||||| || |||||||| ||||| ||||| || ||||| |||||| |||||||||||||||||| |||||||||||||||||| ||||||| | |
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| T |
26315844 |
gttttcgactttgacaaaaccattattgaatgtgacagcgataactgggttgttgatgaattaggtttcaatgatttgttcaatcaactctttcccacca |
26315745 |
T |
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| Q |
102 |
tgcctttcaattctctcatggta |
124 |
Q |
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| T |
26315744 |
tgccattgaactatctcatggta |
26315722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 105
Target Start/End: Complemental strand, 43110952 - 43110849
Alignment:
| Q |
2 |
gttttcgacttcgataaaaccataattgattgtgatagtgataattgggttcttgatgaattaggtttcaccgatttgttcaatcaactccttcccacta |
101 |
Q |
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||||| ||||| || ||||||||| |||| ||||| |||||||| |||||| |||||||||| |||||||| |||||||||||| |||| ||||||| | |
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| T |
43110952 |
gtttttgactttgacaaaaccatagttgaatgtgacagtgataactgggttgttgatgaattgggtttcactgatttgttcaatgaacttgttcccacca |
43110853 |
T |
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| Q |
102 |
tgcc |
105 |
Q |
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|||| |
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| T |
43110852 |
tgcc |
43110849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 69
Target Start/End: Complemental strand, 43105463 - 43105420
Alignment:
| Q |
26 |
attgattgtgatagtgataattgggttcttgatgaattaggttt |
69 |
Q |
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| T |
43105463 |
attgaatgtgatagtgataattgggttcttgatgagtttggttt |
43105420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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