View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17326_high_4 (Length: 628)
Name: NF17326_high_4
Description: NF17326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17326_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 518; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 13 - 592
Target Start/End: Complemental strand, 43408130 - 43407555
Alignment:
| Q |
13 |
agagacaatgaagatagtgtgtgtggccaagcatgtgtgtcttttttcttacttgtgtcaaagaatagcctgagcccttaacaaaccaggctggacatgc |
112 |
Q |
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| T |
43408130 |
agagacaatgaagatagtgtgtgtggccaagcatgtgtgtcttttttcttacttgtgtcaaagaatagcctgagcccttaacaaaccaggctggacatgc |
43408031 |
T |
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| Q |
113 |
aaatttaagacgtatagcgtggcccataacattatggaacacattgctgttcacttttactttacagtttataatgttgcatatttggttagcatgtggt |
212 |
Q |
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| T |
43408030 |
aaattcaagacgtatagcgtggcccataacattatggaacacattgctgttcacttttactttacagtttataatgttgcatatttggttagcatgtggt |
43407931 |
T |
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| Q |
213 |
ttgcagatgctagagcaagacttttttgtaagatgaaaatgtctatcattccctactcatgagtcatgaatcataagaagtacagatattggccatatag |
312 |
Q |
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| T |
43407930 |
ttgcagatgctagagcaagacttttttgtaagatgaaaatgtctatcattccctactcatgagtcatgaatcataagaagtacagatattggccatataa |
43407831 |
T |
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| Q |
313 |
tagctacttagcttttatgtcttttcttatccattttgctttgaatannnnnnnagttttaagagcctaacagtgaactcaagaaactcacacataatat |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||| ||||||| |
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| T |
43407830 |
tagctacttagcttttatgtcttttcttatccattttgctttgaatatttttttagttttaagagcctaacaatgaaatcaagaaactcacatataatat |
43407731 |
T |
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| Q |
413 |
gtaaagaagcgagcaattgtaccacttcttcctattgagttatacttacttatataacaatttgaatttcttatctacttagtataaagaaattaaattt |
512 |
Q |
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||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43407730 |
gtaaagaagtgagcaattgtaccacttcttcctattgagtta----tacttatataacaatttgaatttcttatctacttagtataaagaaattaaattt |
43407635 |
T |
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| Q |
513 |
ctattatgcaaatttagatgactgaaatgctaaactgttacaatttcataaaaacaaaatgatcatttagtttgattgta |
592 |
Q |
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| T |
43407634 |
ctattatgcaaatttagatgactgaaatgctaaactgttacaatttcataaaaacaaaatgatcatttagtttgattgta |
43407555 |
T |
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