View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17326_high_40 (Length: 260)
Name: NF17326_high_40
Description: NF17326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17326_high_40 |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 19 - 252
Target Start/End: Complemental strand, 2326325 - 2326092
Alignment:
| Q |
19 |
ttgtgccggttgctagatatgagtttgtgattgggaagtgctttaggacgatcggagaagagagatgaattttgaacgagagcgtggtgggccagagcac |
118 |
Q |
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|||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
2326325 |
ttgtgctggttgctagatatgagtttgtgactgggaagtgctttaggacgatcggagaagagagatgaattttgaacgagggcgtggtgggccagagcac |
2326226 |
T |
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| Q |
119 |
ggtcggagatgtaaatggaaggtctggagccgatattaagattgatgataggaccatgtttggcatggagagttttgagaaaaggttcaagttgggaaaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2326225 |
ggtcggagatgtaaatggaaggtctggagccgatattaagattgatgataggaccatgtttggcatggagagttttgagaaaaggttcaagttgggaaaa |
2326126 |
T |
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| Q |
219 |
tgattttcggagccattgtatgcttatgatgatg |
252 |
Q |
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| T |
2326125 |
tgattttcggagccattgtatgcttgtgatgatg |
2326092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 2330040 - 2329808
Alignment:
| Q |
19 |
ttgtgccggttgctagatatgagtttgtgattgggaagtgctttaggacgatcggagaagagagatgaattttgaacgagagcgtggtgggccagagcac |
118 |
Q |
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| T |
2330040 |
ttgtgctggttgctggacatgagtttgttagtgggaagtgctttaggacgatcagagaagacggaggagttttgaacgagagcgtggtgggccagagcac |
2329941 |
T |
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| Q |
119 |
ggtcggagatgtaaatggaaggtctggagccgatattaagattgatgataggaccatgtttggcatggagagttttgagaaaaggttcaagttgggaaaa |
218 |
Q |
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| T |
2329940 |
ggtcggcgatgaaaatggaaggtcgagaaccgatattaagattgatgataggaccatgtttggcatgaagagttctgagaaaaggttcaagctgggcgaa |
2329841 |
T |
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| Q |
219 |
tgattttcggagccattgtatgcttatgatgat |
251 |
Q |
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| T |
2329840 |
tgattttcgaagccattggatgcttgtgatgat |
2329808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 52 - 236
Target Start/End: Complemental strand, 2293118 - 2292934
Alignment:
| Q |
52 |
ggaagtgctttaggacgatcggagaagagagatgaattttgaacgagagcgtggtgggccagagcacggtcggagatgtaaatggaaggtctggagccga |
151 |
Q |
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||||| ||| |||| ||||| ||||||| ||||| |||||||||||| | ||||||||||||| | ||||| ||| |||||||||||| || |||| |
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| T |
2293118 |
ggaagagctgtagggcgatcagagaagatggatgagttttgaacgagaacatggtgggccagagtatggtcgttaatgaaaatggaaggtcgagaaccga |
2293019 |
T |
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| Q |
152 |
tattaagattgatgataggaccatgtttggcatggagagttttgagaaaaggttcaagttgggaaaatgattttcggagccattg |
236 |
Q |
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||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||| |||| |
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| T |
2293018 |
tatggacagtgatgataggaccatgtttggcatggagagttttgagaaaaggttcaagttgggagattgatttttggagcaattg |
2292934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 67 - 236
Target Start/End: Complemental strand, 2320423 - 2320254
Alignment:
| Q |
67 |
cgatcggagaagagagatgaattttgaacgagagcgtggtgggccagagcacggtcggagatgtaaatggaaggtctggagccgatattaagattgatga |
166 |
Q |
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||||| ||||||| | ||| |||||||||||| | ||||| ||||||||| ||||| |||| |||||||||||| || ||||||| | | |||||| |
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| T |
2320423 |
cgatccgagaagatggctgagttttgaacgagaacatggtgagccagagcatggtcgttgatgaaaatggaaggtcgagaaccgatatggacagtgatga |
2320324 |
T |
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| Q |
167 |
taggaccatgtttggcatggagagttttgagaaaaggttcaagttgggaaaatgattttcggagccattg |
236 |
Q |
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| T |
2320323 |
taggaccatgtttggcatggagagttttgagaaaaggttcaagttgggagattgatttttggagcaattg |
2320254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 50 - 234
Target Start/End: Complemental strand, 2350309 - 2350125
Alignment:
| Q |
50 |
tgggaagtgctttaggacgatcggagaagagagatgaattttgaacgagagcgtggtgggccagagcacggtcggagatgtaaatggaaggtctggagcc |
149 |
Q |
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||||||| ||| |||| ||||| ||||||| | ||| ||||||||||||||||||||||| |||| | ||||||||||| |||||||||||| | | | |
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| T |
2350309 |
tgggaagagctctagggcgatcagagaagatggctgagttttgaacgagagcgtggtgggcgagagtatggtcggagatgaaaatggaaggtcggtaact |
2350210 |
T |
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| Q |
150 |
gatattaagattgatgataggaccatgtttggcatggagagttttgagaaaaggttcaagttgggaaaatgattttcggagccat |
234 |
Q |
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| T |
2350209 |
gattttgagagtgatgataggaccatatttggtgtggagggttttgataaaaggttcgagttgggacgatgattttcggagccat |
2350125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 88 - 231
Target Start/End: Complemental strand, 2302701 - 2302558
Alignment:
| Q |
88 |
ttttgaacgagagcgtggtgggccagagcacggtcggagatgtaaatggaaggtctggagccgatattaagattgatgataggaccatgtttggcatgga |
187 |
Q |
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|||||||||||| | ||||||||||||||| |||| |||| |||||||||||| || ||||| | ||| ||||||||||||||||||||||||||| |
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| T |
2302701 |
ttttgaacgagaacatggtgggccagagcatggtcatcgatgaaaatggaaggtcgagaaccgatgtggagagtgatgataggaccatgtttggcatgga |
2302602 |
T |
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| Q |
188 |
gagttttgagaaaaggttcaagttgggaaaatgattttcggagc |
231 |
Q |
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|||||||||||||||||||||||||||| ||| |||||||||| |
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| T |
2302601 |
gagttttgagaaaaggttcaagttgggaggatggttttcggagc |
2302558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 88 - 236
Target Start/End: Complemental strand, 2309413 - 2309265
Alignment:
| Q |
88 |
ttttgaacgagagcgtggtgggccagagcacggtcggagatgtaaatggaaggtctggagccgatattaagattgatgataggaccatgtttggcatgga |
187 |
Q |
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|||||||||||| | ||||| ||||||||| ||||| |||| ||||||||||| || ||||||| | | ||||||||||||||||||||||||||| |
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| T |
2309413 |
ttttgaacgagaacatggtgagccagagcatggtcgttgatgaaaatggaaggttgagaaccgatatggacaatgatgataggaccatgtttggcatgga |
2309314 |
T |
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| Q |
188 |
gagttttgagaaaaggttcaagttgggaaaatgattttcggagccattg |
236 |
Q |
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|||||||||||||||||||||||||||| | ||||||| ||||| |||| |
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| T |
2309313 |
gagttttgagaaaaggttcaagttgggagattgatttttggagcaattg |
2309265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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