View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17326_high_44 (Length: 251)

Name: NF17326_high_44
Description: NF17326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17326_high_44
NF17326_high_44
[»] chr2 (11 HSPs)
chr2 (21-238)||(8378905-8379122)
chr2 (32-238)||(30476520-30476726)
chr2 (31-238)||(23783261-23783468)
chr2 (33-238)||(30395748-30395953)
chr2 (30-238)||(30484696-30484904)
chr2 (31-238)||(23768614-23768821)
chr2 (32-238)||(30384995-30385201)
chr2 (32-230)||(30425280-30425478)
chr2 (32-230)||(30469379-30469577)
chr2 (32-238)||(30431313-30431519)
chr2 (32-238)||(30437568-30437774)
[»] chr5 (1 HSPs)
chr5 (31-238)||(41626754-41626961)
[»] chr8 (4 HSPs)
chr8 (30-230)||(15858459-15858659)
chr8 (30-183)||(15865574-15865727)
chr8 (35-228)||(15844326-15844519)
chr8 (35-183)||(15851606-15851754)


Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 21 - 238
Target Start/End: Complemental strand, 8379122 - 8378905
Alignment:
Q  21 aacataacaatgaactatggggtgatgatgcaaagatgttcaatcctgagagatttgctgaaggaatttccaaagcaacaaatggtagatttatatattt 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8379122 aacataacaatgaactatggggtgatgatgcaaagatgttcaatcctgagagatttgctgaaggaatttccaaagcaacaaatggtagatttatatattt 8379023  T
Q  121 cccatttggagggggtcctagagtttgcatgggacaaaatttttccctattggaagcaaagatggcagtgtcaatgattttacaaaatttctattttgaa 220  Q
     |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8379022 tccatttggagggggtcctagagtttgcatgggacaaaacttttccctattggaagcaaagatggcagtgtcaatgattttacaaaatttctattttgaa 8378923  T
Q  221 ctttctccaacctatgct 238  Q
    ||||||||||||||||||    
T  8378922 ctttctccaacctatgct 8378905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 32 - 238
Target Start/End: Original strand, 30476520 - 30476726
Alignment:
Q  32 gaactatggggtgatgatgcaaagatgttcaatcctgagagatttgctgaaggaatttccaaagcaacaaatggtagatttatatatttcccatttggag 131  Q
    |||||||||||||| ||||| ||| |||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||  || ||| ||||||||||    
T  30476520 gaactatggggtgaagatgctaaggtgttcaatcctgagagattttctggaggaatttccaaagcaacaaatgggagattttcattttttccatttggag 30476619  T
Q  132 ggggtcctagagtttgcatgggacaaaatttttccctattggaagcaaagatggcagtgtcaatgattttacaaaatttctattttgaactttctccaac 231  Q
    ||||||| ||| ||||||| ||||||||||||||| | |||||||||||||||||| || ||||||||||| |||| ||||  ||||||||||||||| |    
T  30476620 ggggtccaagaatttgcattggacaaaatttttccatgttggaagcaaagatggcaatggcaatgattttaaaaaaattctcatttgaactttctccatc 30476719  T
Q  232 ctatgct 238  Q
     ||||||    
T  30476720 ttatgct 30476726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 31 - 238
Target Start/End: Complemental strand, 23783468 - 23783261
Alignment:
Q  31 tgaactatggggtgatgatgcaaagatgttcaatcctgagagatttgctgaaggaatttccaaagcaacaaatggtagatttatatatttcccatttgga 130  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||| |||  |||||||||||||||||||| |||||||||  |||||| || ||||||    
T  23783468 tgaactatggggtgatgatgctaagattttcaatcctgagagattttctggtggaatttccaaagcaacaaacggtagattttcatattttccgtttgga 23783369  T
Q  131 gggggtcctagagtttgcatgggacaaaatttttccctattggaagcaaagatggcagtgtcaatgattttacaaaatttctattttgaactttctccaa 230  Q
    | |||||||||| | ||||| |||||||| |||||||| |||||||||||||||||| || || |||||||| | ||||| |  ||||||||||||| ||    
T  23783368 gcgggtcctagaatctgcattggacaaaacttttccctgttggaagcaaagatggcaatggcattgattttaaagaatttttcatttgaactttctcaaa 23783269  T
Q  231 cctatgct 238  Q
    | ||||||    
T  23783268 catatgct 23783261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 33 - 238
Target Start/End: Original strand, 30395748 - 30395953
Alignment:
Q  33 aactatggggtgatgatgcaaagatgttcaatcctgagagatttgctgaaggaatttccaaagcaacaaatggtagatttatatatttcccatttggagg 132  Q
    |||||||||| |||||||| || ||||||||||||||||||||| | | ||||||||| |||||||||||||||||| ||  || ||| ||||||||| |    
T  30395748 aactatggggcgatgatgctaaaatgttcaatcctgagagattttccggaggaatttctaaagcaacaaatggtagagtttcattttttccatttggatg 30395847  T
Q  133 gggtcctagagtttgcatgggacaaaatttttccctattggaagcaaagatggcagtgtcaatgattttacaaaatttctattttgaactttctccaacc 232  Q
    |||||| ||| ||||||| |||||||| ||||||||| ||||||||||||||||| ||||||||||||| ||| |||| |  |||||||||||  |||||    
T  30395848 gggtccaagaatttgcattggacaaaacttttccctaatggaagcaaagatggcattgtcaatgattttgcaacatttttcatttgaactttcctcaacc 30395947  T
Q  233 tatgct 238  Q
    ||||||    
T  30395948 tatgct 30395953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 30 - 238
Target Start/End: Original strand, 30484696 - 30484904
Alignment:
Q  30 atgaactatggggtgatgatgcaaagatgttcaatcctgagagatttgctgaaggaatttccaaagcaacaaatggtagatttatatatttcccatttgg 129  Q
    |||||||||||||||| ||||| ||| |||||||||||||||||||||| |||||| |||| ||||||||||||||||||  |  || ||| ||||||||    
T  30484696 atgaactatggggtgaagatgctaaggtgttcaatcctgagagatttgcagaaggagtttcaaaagcaacaaatggtagaaattcattttttccatttgg 30484795  T
Q  130 agggggtcctagagtttgcatgggacaaaatttttccctattggaagcaaagatggcagtgtcaatgattttacaaaatttctattttgaactttctcca 229  Q
    ||||||||||||| |||| || |||||||| |||||| | |||||||||||||||||| |  || ||||||| ||  ||||||  |||||||||||||||    
T  30484796 agggggtcctagaatttgtattggacaaaacttttccatgttggaagcaaagatggcaataacattgattttgcagcatttctcatttgaactttctcca 30484895  T
Q  230 acctatgct 238  Q
    |||||||||    
T  30484896 acctatgct 30484904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 31 - 238
Target Start/End: Original strand, 23768614 - 23768821
Alignment:
Q  31 tgaactatggggtgatgatgcaaagatgttcaatcctgagagatttgctgaaggaatttccaaagcaacaaatggtagatttatatatttcccatttgga 130  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||| |||  |||||||||||||||||||| |||||||||  |||||| || ||||||    
T  23768614 tgaactatggggtgatgatgctaagattttcaatcctgagagattttctggtggaatttccaaagcaacaaacggtagattttcatattttccgtttgga 23768713  T
Q  131 gggggtcctagagtttgcatgggacaaaatttttccctattggaagcaaagatggcagtgtcaatgattttacaaaatttctattttgaactttctccaa 230  Q
    |  ||||||||| | ||||| ||||| |  ||||| ||||||||||||||||||||| || || |||||||||| ||||| |  ||||||||||||| ||    
T  23768714 gcaggtcctagaatctgcattggacagaccttttctctattggaagcaaagatggcaatggcattgattttacagaatttttcatttgaactttctcaaa 23768813  T
Q  231 cctatgct 238  Q
    | ||||||    
T  23768814 catatgct 23768821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 32 - 238
Target Start/End: Original strand, 30384995 - 30385201
Alignment:
Q  32 gaactatggggtgatgatgcaaagatgttcaatcctgagagatttgctgaaggaatttccaaagcaacaaatggtagatttatatatttcccatttggag 131  Q
    |||||||||||||||||||| || |||||||||||||| ||||||  || |||||||||||||||||||||||| ||| ||  || ||| |||||||||     
T  30384995 gaactatggggtgatgatgctaaaatgttcaatcctgaaagattttttggaggaatttccaaagcaacaaatggaagagtttcattttttccatttggat 30385094  T
Q  132 ggggtcctagagtttgcatgggacaaaatttttccctattggaagcaaagatggcagtgtcaatgattttacaaaatttctattttgaactttctccaac 231  Q
    |||||||| || ||||||| |||||||| ||||| ||| |||||||||| |||||| || || ||||||| ||| ||||||  ||||||||||| || ||    
T  30385095 ggggtcctcgaatttgcattggacaaaacttttctctaatggaagcaaaaatggcaatgacattgattttgcaacatttctcatttgaactttcaccgac 30385194  T
Q  232 ctatgct 238  Q
    |||||||    
T  30385195 ctatgct 30385201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 32 - 230
Target Start/End: Original strand, 30425280 - 30425478
Alignment:
Q  32 gaactatggggtgatgatgcaaagatgttcaatcctgagagatttgctgaaggaatttccaaagcaacaaatggtagatttatatatttcccatttggag 131  Q
    |||||||||||||||||||| ||| |||||||||| ||||||||| | |||||  |||  |||||||||||||| |||  |  || ||| ||||||||||    
T  30425280 gaactatggggtgatgatgctaaggtgttcaatcccgagagattttcagaaggtgttttaaaagcaacaaatggaagaaattcattttttccatttggag 30425379  T
Q  132 ggggtcctagagtttgcatgggacaaaatttttccctattggaagcaaagatggcagtgtcaatgattttacaaaatttctattttgaactttctccaa 230  Q
    ||||||||||| ||||||| |||||||| |||||  | |||||||||||||||||| |  ||||||||||||||  |||| | || |||||||||||||    
T  30425380 ggggtcctagaatttgcattggacaaaacttttctatgttggaagcaaagatggcaatagcaatgattttacaacgtttcgacttcgaactttctccaa 30425478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 32 - 230
Target Start/End: Original strand, 30469379 - 30469577
Alignment:
Q  32 gaactatggggtgatgatgcaaagatgttcaatcctgagagatttgctgaaggaatttccaaagcaacaaatggtagatttatatatttcccatttggag 131  Q
    |||||||||||||| ||||| ||| |||||||||| ||||||||| |||||||  |||  |||||||| ||||| |||  |  || ||| ||||||| ||    
T  30469379 gaactatggggtgaagatgctaaggtgttcaatcccgagagattttctgaaggtgttttaaaagcaaccaatggaagaaattcattttttccatttgcag 30469478  T
Q  132 ggggtcctagagtttgcatgggacaaaatttttccctattggaagcaaagatggcagtgtcaatgattttacaaaatttctattttgaactttctccaa 230  Q
    ||||||||||| ||||||| ||||| || |||||| | |||||||||||||||||| |  ||||||||||||||  |||||  ||||||||||||||||    
T  30469479 ggggtcctagaatttgcattggacagaacttttccatgttggaagcaaagatggcaatagcaatgattttacaacgtttctcatttgaactttctccaa 30469577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 32 - 238
Target Start/End: Original strand, 30431313 - 30431519
Alignment:
Q  32 gaactatggggtgatgatgcaaagatgttcaatcctgagagatttgctgaaggaatttccaaagcaacaaatggtagatttatatatttcccatttggag 131  Q
    |||||||||||||| ||||| ||| |||||||||| ||||||||| | |||||  |||  |||||||||||||| |||  |  || | | ||||||| ||    
T  30431313 gaactatggggtgaagatgctaaggtgttcaatcccgagagattttcagaaggtgttttaaaagcaacaaatggaagaaattcatttattccatttgaag 30431412  T
Q  132 ggggtcctagagtttgcatgggacaaaatttttccctattggaagcaaagatggcagtgtcaatgattttacaaaatttctattttgaactttctccaac 231  Q
    ||||||||||| |||| || |||||||| |||||| | |||||||||||||||||| |  ||||||||||||||  |||||  ||||||||||||||| |    
T  30431413 ggggtcctagaatttgaattggacaaaacttttccatgttggaagcaaagatggcaatagcaatgattttacaacgtttctcatttgaactttctccatc 30431512  T
Q  232 ctatgct 238  Q
     ||||||    
T  30431513 ttatgct 30431519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 32 - 238
Target Start/End: Original strand, 30437568 - 30437774
Alignment:
Q  32 gaactatggggtgatgatgcaaagatgttcaatcctgagagatttgctgaaggaatttccaaagcaacaaatggtagatttatatatttcccatttggag 131  Q
    |||||||||||||| ||||| ||| |||||||||||||||||||| |||||||  |||  |||||||||||||| |||  |  || | | ||||||||||    
T  30437568 gaactatggggtgacgatgctaaggtgttcaatcctgagagattttctgaaggtgttttgaaagcaacaaatggaagaaattcatttgttccatttggag 30437667  T
Q  132 ggggtcctagagtttgcatgggacaaaatttttccctattggaagcaaagatggcagtgtcaatgattttacaaaatttctattttgaactttctccaac 231  Q
    ||||||||||| ||||||| ||||| || |||||  | |||||||||||||||||  |  ||||||||||||||  |||||  || |||||||||||| |    
T  30437668 ggggtcctagaatttgcattggacagaacttttctatgttggaagcaaagatggcgatagcaatgattttacaacgtttctcattcgaactttctccatc 30437767  T
Q  232 ctatgct 238  Q
     ||||||    
T  30437768 ttatgct 30437774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 31 - 238
Target Start/End: Complemental strand, 41626961 - 41626754
Alignment:
Q  31 tgaactatggggtgatgatgcaaagatgttcaatcctgagagatttgctgaaggaatttccaaagcaacaaatggtagatttatatatttcccatttgga 130  Q
    |||| |||||||||||||||| || |||||||||||||| |||||| ||| |||||||||||||||||| || |||||| ||  || ||| |||||||||    
T  41626961 tgaattatggggtgatgatgctaaaatgttcaatcctgaaagattttctggaggaatttccaaagcaacgaacggtagagtttcattttttccatttgga 41626862  T
Q  131 gggggtcctagagtttgcatgggacaaaatttttccctattggaagcaaagatggcagtgtcaatgattttacaaaatttctattttgaactttctccaa 230  Q
     ||||||||||  | ||||| || ||||| ||||| ||||||||||||||||||||| || || ||||||||||  ||||||  ||| |||||||||||     
T  41626861 tggggtcctaggatctgcattgggcaaaacttttctctattggaagcaaagatggcaatgacattgattttacagcatttctcatttcaactttctccag 41626762  T
Q  231 cctatgct 238  Q
    ||||||||    
T  41626761 cctatgct 41626754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 30 - 230
Target Start/End: Complemental strand, 15858659 - 15858459
Alignment:
Q  30 atgaactatggggtgatgatgcaaagatgttcaatcctgagagatttgctgaaggaatttccaaagcaacaaatggtagatttatatatttcccatttgg 129  Q
    |||| |||||||||||||||||||||  |||||| ||||| || ||||||||||||||| | || |||||||| ||   | ||   |||||||| |||||    
T  15858659 atgatctatggggtgatgatgcaaaggagttcaaacctgaaaggtttgctgaaggaattgcgaaggcaacaaaaggacaagtttcttatttcccttttgg 15858560  T
Q  130 agggggtcctagagtttgcatgggacaaaatttttccctattggaagcaaagatggcagtgtcaatgattttacaaaatttctattttgaactttctcca 229  Q
    | ||||||||||| ||||  | |||||||| ||| || |||| ||||||||||| ||||| ||| || |  | || |||||||  || ||||||||||||    
T  15858559 atggggtcctagaatttgtcttggacaaaactttgccttattagaagcaaagatagcagtatcattgttgctgcagaatttctcattcgaactttctcca 15858460  T
Q  230 a 230  Q
    |    
T  15858459 a 15858459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 30 - 183
Target Start/End: Complemental strand, 15865727 - 15865574
Alignment:
Q  30 atgaactatggggtgatgatgcaaagatgttcaatcctgagagatttgctgaaggaatttccaaagcaacaaatggtagatttatatatttcccatttgg 129  Q
    |||| |||||||||||||||||||||  |||||| ||||| || ||||||||||||||| | || || ||||| || | | ||   |||||||| |||||    
T  15865727 atgatctatggggtgatgatgcaaaggagttcaaacctgaaaggtttgctgaaggaattgcaaaggctacaaaaggaaaagtttcttatttcccttttgg 15865628  T
Q  130 agggggtcctagagtttgcatgggacaaaatttttccctattggaagcaaagat 183  Q
    | ||||||||||| ||||  | |||||||| ||| || || | |||||||||||    
T  15865627 atggggtcctagaatttgtcttggacaaaactttgccttactagaagcaaagat 15865574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 228
Target Start/End: Complemental strand, 15844519 - 15844326
Alignment:
Q  35 ctatggggtgatgatgcaaagatgttcaatcctgagagatttgctgaaggaatttccaaagcaacaaatggtagatttatatatttcccatttggagggg 134  Q
    |||||||| ||||||||||||  |||||| || || || ||||||||||||||| | || |||||||| ||   | ||   |||||||| |||||| |||    
T  15844519 ctatggggggatgatgcaaaggagttcaaacccgaaaggtttgctgaaggaattgcgaaggcaacaaaaggacaagtttcttatttcccctttggatggg 15844420  T
Q  135 gtcctagagtttgcatgggacaaaatttttccctattggaagcaaagatggcagtgtcaatgattttacaaaatttctattttgaactttctcc 228  Q
    |||||||| ||||  | |||||||| ||| || |||| ||||||||||| ||| | ||| || |  | || |||||||  ||||||||||||||    
T  15844419 gtcctagaatttgtcttggacaaaactttaccttattagaagcaaagatagcaatatcattgttgctgcagaatttctcatttgaactttctcc 15844326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 35 - 183
Target Start/End: Complemental strand, 15851754 - 15851606
Alignment:
Q  35 ctatggggtgatgatgcaaagatgttcaatcctgagagatttgctgaaggaatttccaaagcaacaaatggtagatttatatatttcccatttggagggg 134  Q
    |||||||||||||||||||||| ||||||||||||  | ||| ||||||||||| | || || ||||| ||   | ||   ||| |||| |||||| |||    
T  15851754 ctatggggtgatgatgcaaagaagttcaatcctgaacggttttctgaaggaattgcaaaggccacaaaaggccaagtttcgtatatcccttttggatggg 15851655  T
Q  135 gtcctagagtttgcatgggacaaaatttttccctattggaagcaaagat 183  Q
    |||||||| ||||  | |||||||| ||| || |||| |||||||||||    
T  15851654 gtcctagaatttgtcttggacaaaactttgccttattagaagcaaagat 15851606  T

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