View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17326_high_5 (Length: 613)
Name: NF17326_high_5
Description: NF17326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17326_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 568; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 568; E-Value: 0
Query Start/End: Original strand, 1 - 596
Target Start/End: Complemental strand, 42187140 - 42186545
Alignment:
| Q |
1 |
aagaataaactataatgataagcttcaagatcaataagatgttgttgggattctgaaatattttgaagtaaataaatttcttaccttagtcccgttcatt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
42187140 |
aagaataaactataatgataagcttcaagatcaataagatgttgttgggattctgaaatattttgaagcaaataaatttcttaccttagtcccgttcatt |
42187041 |
T |
|
| Q |
101 |
ttcaattccgatgtgtccttaaaaacttgtttgattgcattaacctcagctaagtcaccggctagtgtggatgtggcatgagcattcacatagttcacct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42187040 |
ttcaattccgatgtgtccttaaaaacttgtttgattgcattaacctcagctaagtcaccggctagtgtggatgtggcatgagcattcacatagttcacct |
42186941 |
T |
|
| Q |
201 |
taacaatttagaaattaaccaattaggattcttacataaatatgagaatttgaacttgtttaagtgtaaacgtgtttgatatcaccatgagtttggcaaa |
300 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42186940 |
ttacaatttagaaattaaccaattaggattcttacataaatatgagaatttgaacttgtttaagtgtaaacgtgtttgatatcaccatgagtttggcaaa |
42186841 |
T |
|
| Q |
301 |
atttcggtggctgtgtgattttttaaattatggcagcacagcatgattctgccgatctcaccaccaatccgaacatgcactaacatgaaatttttccagt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42186840 |
atttcggtggctgtgtgattttttaaattgtggcagcacaccatgattctgccgaactcaccaccaatccgaacatgcactaacatgaaatttttccagt |
42186741 |
T |
|
| Q |
401 |
tttgatattattggttacttgtcactgctatctttcttacctcttcaggagataccccagcatcttctaaacccttgtttatgcaagatgatactcctag |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42186740 |
tttgatattattggttacttgtcactgctatctttcttacctcttcaggagaaaccccagcatcttctaaacccttgtttatgcaagatgatactcctag |
42186641 |
T |
|
| Q |
501 |
tccatcagatctaggatcagtcatgtgatgagcatcacatgttatggcaccacccaaatattcagcaattattcttgctcccctcttagttgcact |
596 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
42186640 |
tccatcagatctaggatcagtcatgtgatgagcatcacatgttatggcaccacccaaatattcagcaattattcttgctcccctctttgttgcact |
42186545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 42204191 - 42203961
Alignment:
| Q |
1 |
aagaataaactataatgataagcttcaagatcaataagatgttgttgggattctgaaatattttgaagtaaataaatttcttaccttagtcccgttcatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
42204191 |
aagaataaactataatgataagcttcaagatcaataagatgttgttgggattctgaaatattttgaagcaaataaatttcttaccttagtcccgttcatt |
42204092 |
T |
|
| Q |
101 |
ttcaattccgatgtgtccttaaaaacttgtttgattgcattaacctcagctaagtcaccggctagtgtggatgtggcatgagcattcacatagttcacct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||| ||||||||||||| |
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|
| T |
42204091 |
ttcaattccgatgtgtccttaaaaacttgtttgattgcattaacctcagctaagtcaccgatcagtgatgatgtggcgtgagcatttacatagttcacct |
42203992 |
T |
|
| Q |
201 |
taacaatttagaaattaaccaattaggattc |
231 |
Q |
| |
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| ||||||| ||| || |||||||||||| |
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| T |
42203991 |
ttacaatttgaaaagtagacaattaggattc |
42203961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 82 - 231
Target Start/End: Complemental strand, 42196853 - 42196704
Alignment:
| Q |
82 |
taccttagtcccgttcattttcaattccgatgtgtccttaaaaacttgtttgattgcattaacctcagctaagtcaccggctagtgtggatgtggcatga |
181 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||| ||||| ||||| ||||||||||||| ||||||||| || ||||| |||| ||||||||||||||| |
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|
| T |
42196853 |
taccttagttccgttcattttcaattctgatgtatccttgaaaacctgtttgattgcataaacctcagccaaatcaccagctaccgtggatgtggcatga |
42196754 |
T |
|
| Q |
182 |
gcattcacatagttcaccttaacaatttagaaattaaccaattaggattc |
231 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
42196753 |
gcattcacatagttcacctttacaatttagaaattaaccaattaggattc |
42196704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 437 - 596
Target Start/End: Complemental strand, 42196470 - 42196306
Alignment:
| Q |
437 |
ttacctcttcaggagataccccagcatcttctaaacccttgtttatgcaagatgatactcctagtccatcagatctaggatcagtcatgtgatgagcatc |
536 |
Q |
| |
|
||||||||||||| || ||||| |||| |||||||| |||||||||||||||||| || || ||||||||||| || ||||||||||||||||||||||| |
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| T |
42196470 |
ttacctcttcaggggaaaccccggcattttctaaactcttgtttatgcaagatgaaacaccaagtccatcagaccttggatcagtcatgtgatgagcatc |
42196371 |
T |
|
| Q |
537 |
-----acatgttatggcaccacccaaatattcagcaattattcttgctcccctcttagttgcact |
596 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |
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|
| T |
42196370 |
acatcacatgttatggcaccacccaaatattcagcaattatttttgctcccctctttgttgcact |
42196306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 435 - 587
Target Start/End: Complemental strand, 42203874 - 42203722
Alignment:
| Q |
435 |
tcttacctcttcaggagataccccagcatcttctaaacccttgtttatgcaagatgatactcctagtccatcagatctaggatcagtcatgtgatgagca |
534 |
Q |
| |
|
||||||||||| ||| || ||||||||||||| ||||| |||| |||||||||| || ||| |||||||||| | |||| |||||| ||||||||| |
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| T |
42203874 |
tcttacctcttgaggggaaaccccagcatcttgtaaactcttgcttatgcaagaggactgtccaagtccatcaggcattggattagtcatatgatgagca |
42203775 |
T |
|
| Q |
535 |
tcacatgttatggcaccacccaaatattcagcaattattcttgctcccctctt |
587 |
Q |
| |
|
||||||||||||||||||||||||||||| || | |||||||||||| ||||| |
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| T |
42203774 |
tcacatgttatggcaccacccaaatattctgccagtattcttgctcctctctt |
42203722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 499 - 569
Target Start/End: Original strand, 46610573 - 46610643
Alignment:
| Q |
499 |
agtccatcagatctaggatcagtcatgtgatgagcatcacatgttatggcaccacccaaatattcagcaat |
569 |
Q |
| |
|
||||| |||||||| |||||||||||||||| ||||||||| | | ||||| ||||||||||||||||| |
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|
| T |
46610573 |
agtccgtcagatcttggatcagtcatgtgataagcatcacagttaacagcacctcccaaatattcagcaat |
46610643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 502 - 569
Target Start/End: Complemental strand, 38472748 - 38472681
Alignment:
| Q |
502 |
ccatcagatctaggatcagtcatgtgatgagcatcacatgttatggcaccacccaaatattcagcaat |
569 |
Q |
| |
|
||||||||||| ||||||||||| |||| ||||||||| ||| ||||| ||||| ||||||||||| |
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| T |
38472748 |
ccatcagatcttggatcagtcatatgataagcatcacagtttacagcacctcccaagtattcagcaat |
38472681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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