View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17326_high_50 (Length: 236)
Name: NF17326_high_50
Description: NF17326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17326_high_50 |
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Alignment Details
Target: chr5 (Bit Score: 129; Significance: 7e-67; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 89 - 221
Target Start/End: Original strand, 36822557 - 36822689
Alignment:
| Q |
89 |
tcgcgcaaccccacaaaggtaagtgcttccattgtgatttcttcaatgttattatgttttgtttatagcttgctgaacttattccatatatttctgtttt |
188 |
Q |
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| T |
36822557 |
tcgcgcaaccccacaaaggtaagtgcttccattgtgatttcttcaatgttattatgttttgtttatagcttgctcaacttattccatatatttctgtttt |
36822656 |
T |
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| Q |
189 |
atgttctgctgcatatacgtatttacttgattt |
221 |
Q |
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| T |
36822657 |
atgttctgctgcatatacgtatttacttgattt |
36822689 |
T |
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Target: chr5; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 36822496 - 36822560
Alignment:
| Q |
1 |
aaaaaattaaaatgaaattacaatgaatgaaactcagaaaggtttggtcatctccataatctgggtcgc |
69 |
Q |
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||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
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| T |
36822496 |
aaaaaattaaaatgaaattacaatgaa----acccagaaaggtttggtcatctccataatctgggtcgc |
36822560 |
T |
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