View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17326_high_52 (Length: 227)
Name: NF17326_high_52
Description: NF17326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17326_high_52 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
| [»] scaffold0405 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 27 - 227
Target Start/End: Complemental strand, 26838972 - 26838772
Alignment:
| Q |
27 |
tgctatacaatttatttggttttttacactgcagattatgacactaatttctttatggtgtttatgatgttattatttgaagaatctcatcttattggaa |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
26838972 |
tgctatacaatttatttggttttttacactacagattatgacactaatttctttatggtgtttatgatgttataatttgaagaatctcatcttattggaa |
26838873 |
T |
|
| Q |
127 |
ttgatatatatgtcgctgaagctaatgagttctaccattttttaataataaattcaatttaacggaagagataatcaaatttaaggaaaaatttaaaaca |
226 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
26838872 |
ttgatatatatgtcgctgaagctaatgagttctaccattttttaacaataaattcaatttaagggaagaaataatcaaatttaaggacaaatttaaaaca |
26838773 |
T |
|
| Q |
227 |
t |
227 |
Q |
| |
|
| |
|
|
| T |
26838772 |
t |
26838772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 10 - 225
Target Start/End: Complemental strand, 50974094 - 50973877
Alignment:
| Q |
10 |
agttggtgaaatcatgttgctatacaatttatttggttttttacactgcagattatgacactaatttctttatggtgtttatgatg-ttattatttgaag |
108 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||| |||||| | |
|
|
| T |
50974094 |
agttggtgaaatcatgctgctatacaatttatttggttttttacattacagattatgacactaatttctttatggtgtttatgatgtttataatttgacg |
50973995 |
T |
|
| Q |
109 |
aatctcatcttattggaattgatatatatgtcgctgaagctaatgagttctacc-attttttaataataaattcaatttaacggaagagataatcaaatt |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||| |||||||||||||||| |||||| ||||||||||| |
|
|
| T |
50973994 |
aatctcatcttattggaattgatatatatgtcgctaaagctaatgagttatacctattttttaacaataaattcaatttaagggaagacataatcaaatt |
50973895 |
T |
|
| Q |
208 |
taaggaaaaatttaaaac |
225 |
Q |
| |
|
|||||| ||||||||||| |
|
|
| T |
50973894 |
taaggacaaatttaaaac |
50973877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0405 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: scaffold0405
Description:
Target: scaffold0405; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 10 - 187
Target Start/End: Complemental strand, 14223 - 14046
Alignment:
| Q |
10 |
agttggtgaaatcatgttgctatacaatttatttggttttttacactgcagattatgacactaatttctttatggtgtttatgatgttattatttgaaga |
109 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||| ||| |||||| || ||||||||| |
|
|
| T |
14223 |
agttggtgaaatcatgttgttatacaatatatttggttttttacactacagattatgacactaatttctttatgatgtgaatgatgcaataatttgaaga |
14124 |
T |
|
| Q |
110 |
atctcatcttattggaattgatatatatgtcgctgaagctaatgagttctaccattttttaataataaattcaattta |
187 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
14123 |
atctcatctcattggaattgatatatatgtcgctgaagctaatgagttctaccattctttaacaataaattcaattta |
14046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University