View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17326_high_53 (Length: 215)

Name: NF17326_high_53
Description: NF17326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17326_high_53
NF17326_high_53
[»] chr7 (6 HSPs)
chr7 (17-197)||(47368915-47369095)
chr7 (110-158)||(39463533-39463581)
chr7 (75-158)||(39457968-39458051)
chr7 (110-158)||(39437220-39437268)
chr7 (110-164)||(19981488-19981542)
chr7 (109-158)||(39424197-39424246)
[»] chr1 (1 HSPs)
chr1 (62-196)||(43098365-43098499)
[»] chr3 (3 HSPs)
chr3 (88-196)||(7176142-7176250)
chr3 (134-197)||(48445131-48445194)
chr3 (112-181)||(37418296-37418365)
[»] chr4 (1 HSPs)
chr4 (111-196)||(38490517-38490602)


Alignment Details
Target: chr7 (Bit Score: 173; Significance: 3e-93; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 17 - 197
Target Start/End: Original strand, 47368915 - 47369095
Alignment:
Q  17 tgaacatgcttaaccatacaaaatcgcggaagcttgcaaagctgttgaaggtttcctggtcaaagtagagagcaagaactgcgatccaaaccagtttcca 116  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  47368915 tgaacatgcttaaccatacaaaattgcggaagcttgcaaagctgttgaaggtttcctggtcaaagtagagagcaacaactgcgatccaaaccagtttcca 47369014  T
Q  117 tctctttgagagaacgcttgtggttgcagcgaatttggttgggtgaaaggagagaatatgacagagtatcgaatcaggcat 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47369015 tctctttgagagaacgcttgtggttgcagcgaatttggttgggtgaaaggagagaatatgacagagtatcgaatcaggcat 47369095  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 110 - 158
Target Start/End: Original strand, 39463533 - 39463581
Alignment:
Q  110 gtttccatctctttgagagaacgcttgtggttgcagcgaatttggttgg 158  Q
    |||||||||||||||||||||||||||| |||||||| | |||||||||    
T  39463533 gtttccatctctttgagagaacgcttgtcgttgcagcaagtttggttgg 39463581  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 158
Target Start/End: Original strand, 39457968 - 39458051
Alignment:
Q  75 gtcaaagtagagagcaagaactgcgatccaaaccagtttccatctctttgagagaacgcttgtggttgcagcgaatttggttgg 158  Q
    |||||||| |||||| ||||||| || ||| ||  ||||||||||||||||||| |||||||||||| || | | |||||||||    
T  39457968 gtcaaagtcgagagcgagaactgagagccacacatgtttccatctctttgagaggacgcttgtggttacaacaagtttggttgg 39458051  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 158
Target Start/End: Complemental strand, 39437268 - 39437220
Alignment:
Q  110 gtttccatctctttgagagaacgcttgtggttgcagcgaatttggttgg 158  Q
    ||||||||||||||||||| || |||||||||||||| | |||||||||    
T  39437268 gtttccatctctttgagaggacacttgtggttgcagcaagtttggttgg 39437220  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 164
Target Start/End: Original strand, 19981488 - 19981542
Alignment:
Q  110 gtttccatctctttgagagaacgcttgtggttgcagcgaatttggttgggtgaaa 164  Q
    ||||||||||||||||||| ||||||| | | ||||||| |||||||||| ||||    
T  19981488 gtttccatctctttgagaggacgcttgggatcgcagcgagtttggttgggagaaa 19981542  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 109 - 158
Target Start/End: Complemental strand, 39424246 - 39424197
Alignment:
Q  109 agtttccatctctttgagagaacgcttgtggttgcagcgaatttggttgg 158  Q
    ||||||||||| |||||||| || |||||||||||||| | |||||||||    
T  39424246 agtttccatctttttgagaggacacttgtggttgcagcaagtttggttgg 39424197  T

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Target: chr1 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 62 - 196
Target Start/End: Complemental strand, 43098499 - 43098365
Alignment:
Q  62 tgaaggtttcctggtcaaagtagagagcaagaactgcgatccaaaccagtttccatctctttgagagaacgcttgtggttgcagcgaatttggttgggtg 161  Q
    |||||| ||| ||||||||||||||||||||||||| || ||| ||| ||| |||||| |||||||| ||||||||| |||| || | ||||||||||      
T  43098499 tgaaggcttcttggtcaaagtagagagcaagaactgagagccatacctgttcccatctttttgagaggacgcttgtgattgccgcaagtttggttgggac 43098400  T
Q  162 aaaggagagaatatgacagagtatcgaatcaggca 196  Q
     || |||||||| ||||| || || ||||| ||||    
T  43098399 gaaagagagaatgtgacacagaattgaatctggca 43098365  T

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Target: chr3 (Bit Score: 45; Significance: 8e-17; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 88 - 196
Target Start/End: Original strand, 7176142 - 7176250
Alignment:
Q  88 gcaagaactgcgatccaaaccagtttccatctctttgagagaacgcttgtggttgcagcgaatttggttgggtgaaaggagagaatatgacagagtatcg 187  Q
    ||||| |||| |||||| |||  |||||||||||||||||| ||||||||||||||||| | ||| || ||  ||||||||||||| ||||| ||||| |    
T  7176142 gcaaggactgagatccacaccgatttccatctctttgagaggacgcttgtggttgcagctagtttagtcggaagaaaggagagaatgtgacaaagtatgg 7176241  T
Q  188 aatcaggca 196  Q
    |||| ||||    
T  7176242 aatctggca 7176250  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 197
Target Start/End: Complemental strand, 48445194 - 48445131
Alignment:
Q  134 ttgtggttgcagcgaatttggttgggtgaaaggagagaatatgacagagtatcgaatcaggcat 197  Q
    |||||||| |||| | |||||||||| |||| ||||||||||||| |||||| ||||| |||||    
T  48445194 ttgtggttacagcaagtttggttgggagaaaagagagaatatgactgagtattgaatccggcat 48445131  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 112 - 181
Target Start/End: Complemental strand, 37418365 - 37418296
Alignment:
Q  112 ttccatctctttgagagaacgcttgtggttgcagcgaatttggttgggtgaaaggagagaatatgacaga 181  Q
    ||||| ||||||||||| | ||||||||   ||| |  |||||||||| |||||||||||||||||||||    
T  37418365 ttccacctctttgagaggatgcttgtggcgacagtgtctttggttgggagaaaggagagaatatgacaga 37418296  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 196
Target Start/End: Original strand, 38490517 - 38490602
Alignment:
Q  111 tttccatctctttgagagaacgcttgtggttgcagcgaatttggttgggtgaaaggagagaatatgacagagtatcgaatcaggca 196  Q
    |||||||||||||||||| | ||||||| |   ||| |  ||||||||| |||| |||||||| ||||||||||||||||||||||    
T  38490517 tttccatctctttgagaggaagcttgtgatgaaagcaagattggttgggagaaaagagagaatgtgacagagtatcgaatcaggca 38490602  T

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