View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17326_low_11 (Length: 532)
Name: NF17326_low_11
Description: NF17326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17326_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 441; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 1 - 520
Target Start/End: Complemental strand, 4650119 - 4649590
Alignment:
| Q |
1 |
ctctttactacattgcttgattagtctctctatgcttaaagaataattagctagctatttgcttaatggatcattattgatcttttgttctatatggaaa |
100 |
Q |
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| T |
4650119 |
ctctttactacattgcttgattaatctctctatgcttaaagaataattagctagctaattgcttaatggatcattattgatcttttgttctatatggaaa |
4650020 |
T |
|
| Q |
101 |
tattcctatcatgtaatccatttcaagctagctaacttttatgttcttgaattgaataaaattaatcatgttacatagctttctcttaattttgtggttt |
200 |
Q |
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| T |
4650019 |
tattcctatcatgtaatccatttcaagctagctaacttttatgttcttgaattgaataaaattaatcatgttacatagctttctcttaattttgtggttt |
4649920 |
T |
|
| Q |
201 |
taattataaatt-----------cttattccgaatagaaaattggttccttaatcaaacaattgagttcaagtggtaaacgagattcatcaatgatgaat |
289 |
Q |
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| T |
4649919 |
taattataaattgcatgtatgttcttattccgaatagaaaattggtcccttaaccaaacaattgagttcaagtggtaaacgagcttcatcaatgatgaat |
4649820 |
T |
|
| Q |
290 |
cgttcaggtgaacctgaatttgatttctgggtagaacaagcgttggtcagactatctttaccttgacattaaaatgaagcatatgaatgattgaatatgt |
389 |
Q |
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| T |
4649819 |
cgctcaggtgaacttgaatttaatttctgggtagaacaaacgttggtcagactatctttaccttgacattaaaatgaagtatatgaatgattgaatatgt |
4649720 |
T |
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| Q |
390 |
ttcaataattgtgaattggatttaatatgattttacaaaaattcaagagcatccttacatttttaaatgccacttgtcatgacaatgacaaagggacaaa |
489 |
Q |
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| T |
4649719 |
ttcaataattgtgaatcggatttaatatgattttac-aaaattcaagagcatccttacatttttaaatgccacttgtcatgacaatgacaaagggacaaa |
4649621 |
T |
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| Q |
490 |
aaacgtacatttcggattcatatcttttctg |
520 |
Q |
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| T |
4649620 |
aaacgtacatttcggattcatatcttttctg |
4649590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 6 - 212
Target Start/End: Original strand, 23682145 - 23682337
Alignment:
| Q |
6 |
tactacattgcttgattagtctctctatgcttaaagaataattagctagctatttgcttaatggatcattattgatcttttgttctatatggaaatattc |
105 |
Q |
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| T |
23682145 |
tactacattgcttgattaatctctctatgcttaaagaataattagctagctatttgcctaatgg---attattgatcttttgttctatatggaaatattc |
23682241 |
T |
|
| Q |
106 |
ctatcatgtaatccatttcaagctagctaacttttatgttcttgaattgaataaaattaatcatgttac-------atagctttctcttaattttgtggt |
198 |
Q |
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| T |
23682242 |
ctatcatgtaatccatttcga-------------tatgttc-----ttgaataaaattaatcatgttacataagaaatagctttctcttaattttgtggt |
23682323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 450 - 518
Target Start/End: Original strand, 23682697 - 23682765
Alignment:
| Q |
450 |
ttttaaatgccacttgtcatgacaatgacaaagggacaaaaaacgtacatttcggattcatatcttttc |
518 |
Q |
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| T |
23682697 |
ttttaaattccacttgtcatgacaatgacaaagggacaaaaaacgtacatttcggattcatatcttttc |
23682765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 355 - 424
Target Start/End: Original strand, 23682569 - 23682638
Alignment:
| Q |
355 |
acattaaaatgaagcatatgaatgattgaatatgtttcaataattgtgaattggatttaatatgatttta |
424 |
Q |
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| T |
23682569 |
acattaaaatgaagcatatgaatgattgaatatgtttcaataattgtgaactggatttaatgtgatttta |
23682638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 225 - 257
Target Start/End: Original strand, 23682361 - 23682393
Alignment:
| Q |
225 |
agaaaattggttccttaatcaaacaattgagtt |
257 |
Q |
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| T |
23682361 |
agaaaattggttccttaatcaagcaattgagtt |
23682393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 249 - 289
Target Start/End: Original strand, 26172736 - 26172776
Alignment:
| Q |
249 |
aattgagttcaagtggtaaacgagattcatcaatgatgaat |
289 |
Q |
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| T |
26172736 |
aattgagttcaagtggttaatgagtttcatcaatgatgaat |
26172776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 241 - 294
Target Start/End: Complemental strand, 13462562 - 13462509
Alignment:
| Q |
241 |
aatcaaacaattgagttcaagtggtaaacgagattcatcaatgatgaatcgttc |
294 |
Q |
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| T |
13462562 |
aatcaaacgattgagttcaagtgttaaatgagtttcatcaaagatgaatcgttc |
13462509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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