View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17326_low_13 (Length: 515)

Name: NF17326_low_13
Description: NF17326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17326_low_13
NF17326_low_13
[»] chr5 (5 HSPs)
chr5 (8-303)||(33138920-33139215)
chr5 (315-500)||(33138700-33138884)
chr5 (8-257)||(33148966-33149225)
chr5 (160-223)||(33142727-33142790)
chr5 (317-442)||(33148754-33148880)
[»] chr8 (3 HSPs)
chr8 (8-257)||(34011624-34011883)
chr8 (317-442)||(34011412-34011538)
chr8 (438-475)||(34010942-34010979)
[»] chr4 (9 HSPs)
chr4 (8-257)||(3215406-3215665)
chr4 (137-258)||(32343110-32343230)
chr4 (317-442)||(3215751-3215874)
chr4 (8-70)||(32342978-32343040)
chr4 (8-55)||(32350113-32350160)
chr4 (135-189)||(32350207-32350261)
chr4 (299-442)||(32350374-32350517)
chr4 (436-498)||(32343836-32343900)
chr4 (299-351)||(32343326-32343377)
[»] scaffold1437 (1 HSPs)
scaffold1437 (8-138)||(532-663)


Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 8 - 303
Target Start/End: Complemental strand, 33139215 - 33138920
Alignment:
Q  8 acatattgtggtggtgccacctccatgaaaaatctagcaatgcgagaacttgccattcttaatgtgaattaacttcaagtgttcaattggacaaaaggtg 107  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33139215 acatattgtggtggtgccacctccataaaaaatcttgcaatgcgagaacttgccattcttaatgtgaattaacttcaagtgttcaattggacaaaaggtg 33139116  T
Q  108 taattgctaagagatagataggaatgaaaatgttttgtattgaggatgtgtttgaagcataagaacatggttcaatttataaagggtggctagaagtaat 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33139115 taattgctaagagatagataggaatgaaaatgttttgtattgaggatgtgtttgaagcataagaacatggttcaatttataaagggtggctagaagtaat 33139016  T
Q  208 taactaggcttaaattgagtcaagggtcttaatctttgaggattaaatcaannnnnnnnnnnnagtgccgcctccagcttttgctattaaatggga 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||    
T  33139015 taactaggcttaaattgagtcaagggtcttaatctttgaggattaaatcaatttttattttttagtgccgcctccagcttttgctattaaatggga 33138920  T

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Target: chr5; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 315 - 500
Target Start/End: Complemental strand, 33138884 - 33138700
Alignment:
Q  315 atgtgtcaaaacctggatggaaattataatatccttttggatatggtttttgtttgatacgttgagttccaaatttatacttttcattgagaaattttag 414  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||    
T  33138884 atgtgtcaaaacctggatggaaattataatatccttttggatatggtttttgtttggtacgttgagttccaaatttatacttttcattgataaattttag 33138785  T
Q  415 tgtagtaagccgtttaatactcttccacttgtgtttatttcatcctcacaatgcatgaaatctctcctcatttcaaacatgatgag 500  Q
    |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33138784 tgtagt-agccatttaatactcttccacttgtgtttatttcatcctcacaatgcatgaaatctctcctcatttcaaacatgatgag 33138700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 8 - 257
Target Start/End: Complemental strand, 33149225 - 33148966
Alignment:
Q  8 acatattgtggtggtgccacctccatgaaaaatctagcaatgcgagaacttgccattcttaatgtgaattaacttcaagtgttcaattg-gacaaaaggt 106  Q
    |||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||| ||  |||||||||||||||| || |||| ||    
T  33149225 acatattgtggtggtgccacctccatgaaaaaccttgcaacgcgagaacttgccattcttaatgtgaactagtttcaagtgttcaattgcgaaaaaatgt 33149126  T
Q  107 gtaattgctaagagatagataggaatgaaaat------------gttttgtattgaggatgtgtttgaagcataagaacatggttcaatttataaagggt 194  Q
    |||||  ||||||||||||| |||||||||||            ||||||||||  | |||||||||||||||||||| |  ||||||||||||||||||    
T  33149125 gtaatcactaagagatagattggaatgaaaattgagctgaaaacgttttgtattttg-atgtgtttgaagcataagaata--gttcaatttataaagggt 33149029  T
Q  195 ggctagaagtaattaactaggcttaaattgagtcaagggtcttaatctttgaggattaaatca 257  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  33149028 ggctagaagtaattaactaggcttaaattgagtcaagggtcttaatctttgagggtcaaatca 33148966  T

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Target: chr5; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 160 - 223
Target Start/End: Complemental strand, 33142790 - 33142727
Alignment:
Q  160 tgaagcataagaacatggttcaatttataaagggtggctagaagtaattaactaggcttaaatt 223  Q
    ||||||| || ||||||||||||||||||| ||||||| |||| ||||||||||||||||||||    
T  33142790 tgaagcacaaaaacatggttcaatttataaggggtggccagaaataattaactaggcttaaatt 33142727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 317 - 442
Target Start/End: Complemental strand, 33148880 - 33148754
Alignment:
Q  317 gtgtcaaaacctggatggaaattataatatccttttggatatggtttttgtttgatacgttgagttccaaatttatacttttcattgagaaattttagtg 416  Q
    ||||||| | ||||||||||||| ||||||||| |  ||||| ||||||||||| ||| || |||||| | |||| ||||||||||  || |||||||||    
T  33148880 gtgtcaacatctggatggaaattctaatatcctctaagatatagtttttgtttggtacattaagttcc-attttacacttttcatttggacattttagtg 33148782  T
Q  417 tagta--agccgtttaatactcttccac 442  Q
    |||||  ||| ||||| |||||||||||    
T  33148781 tagtagtagcagtttattactcttccac 33148754  T

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Target: chr8 (Bit Score: 131; Significance: 1e-67; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 8 - 257
Target Start/End: Complemental strand, 34011883 - 34011624
Alignment:
Q  8 acatattgtggtggtgccacctccatgaaaaatctagcaatgcgagaacttgccattcttaatgtgaattaacttcaagtgttcaattg-gacaaaaggt 106  Q
    |||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||| ||  |||||||||||||||| || |||| ||    
T  34011883 acatattgtggtggtgccacctccatgaaaaaccttgcaacgcgagaacttgccattcttaatgtgaactagtttcaagtgttcaattgcgaaaaaatgt 34011784  T
Q  107 gtaattgctaagagatagataggaatgaaaat------------gttttgtattgaggatgtgtttgaagcataagaacatggttcaatttataaagggt 194  Q
    |||||  ||||||||||||| |||||||||||            ||||||||||  | |||||||||||||||||||| |  ||||||||||||||||||    
T  34011783 gtaatcactaagagatagattggaatgaaaattgagctgaaaacgttttgtattttg-atgtgtttgaagcataagaata--gttcaatttataaagggt 34011687  T
Q  195 ggctagaagtaattaactaggcttaaattgagtcaagggtcttaatctttgaggattaaatca 257  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  34011686 ggctagaagtaattaactaggcttaaattgagtcaagggtcttaatctttgagggtcaaatca 34011624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 317 - 442
Target Start/End: Complemental strand, 34011538 - 34011412
Alignment:
Q  317 gtgtcaaaacctggatggaaattataatatccttttggatatggtttttgtttgatacgttgagttccaaatttatacttttcattgagaaattttagtg 416  Q
    ||||||| | ||||||||||||| ||||||||| |  ||||| ||||||||||| ||| || |||||| | |||| ||||||||||  || |||||||||    
T  34011538 gtgtcaacatctggatggaaattctaatatcctctaagatatagtttttgtttggtacattaagttcc-attttacacttttcatttggacattttagtg 34011440  T
Q  417 tagta--agccgtttaatactcttccac 442  Q
    |||||  ||| ||||| |||||||||||    
T  34011439 tagtagtagcagtttattactcttccac 34011412  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 438 - 475
Target Start/End: Complemental strand, 34010979 - 34010942
Alignment:
Q  438 tccacttgtgtttatttcatcctcacaatgcatgaaat 475  Q
    |||||||||||| ||||||||||||||||| |||||||    
T  34010979 tccacttgtgttaatttcatcctcacaatggatgaaat 34010942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 127; Significance: 2e-65; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 8 - 257
Target Start/End: Original strand, 3215406 - 3215665
Alignment:
Q  8 acatattgtggtggtgccacctccatgaaaaatctagcaatgcgagaacttgccattcttaatgtgaattaacttcaagtgttcaattg-gacaaaaggt 106  Q
    |||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||| ||| |||||||||||||||| |  |||| ||    
T  3215406 acatattgtggtggtgccacctccatgaaaaaccttgcaacgcgagaacttgccattcttaatgtgaactaatttcaagtgttcaattgcggaaaaatgt 3215505  T
Q  107 gtaattgctaagagatagataggaatgaaaat------------gttttgtattgaggatgtgtttgaagcataagaacatggttcaatttataaagggt 194  Q
    |||||  ||||||||||||| |||||||||||            ||||||||||   ||||||||||||||||||||  || ||||||||||||||||||    
T  3215506 gtaatcactaagagatagattggaatgaaaattgagctgaaatcgttttgtatt-ttgatgtgtttgaagcataaga--atagttcaatttataaagggt 3215602  T
Q  195 ggctagaagtaattaactaggcttaaattgagtcaagggtcttaatctttgaggattaaatca 257  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||    
T  3215603 ggctagaagtaattatctaggcttaaattgagtcaagggtcttaatctttgagggtcaaatca 3215665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 137 - 258
Target Start/End: Original strand, 32343110 - 32343230
Alignment:
Q  137 atgttttgtattgaggatgtgtttgaagcataagaacatggttcaatttataaagggtggctagaagtaattaactaggcttaaattgagtcaagggtct 236  Q
    |||||||||||||||||||||| | ||||| |||  ||||||||||||||||| |||||||||||  | | |||||||||||||||||||||||||||||    
T  32343110 atgttttgtattgaggatgtgtatcaagcacaagggcatggttcaatttataaggggtggctagagatga-taactaggcttaaattgagtcaagggtct 32343208  T
Q  237 taatctttgaggattaaatcaa 258  Q
    | |||||  ||| |||||||||    
T  32343209 ttatcttaaaggtttaaatcaa 32343230  T

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Target: chr4; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 317 - 442
Target Start/End: Original strand, 3215751 - 3215874
Alignment:
Q  317 gtgtcaaaacctggatggaaattataatatccttttggatatggtttttgtttgatacgttgagttccaaatttatacttttcattgagaaattttagtg 416  Q
    ||||||| ||||||||| ||||| ||||||||| |  ||||| ||||||||||| ||| || |||||| | |||| ||||||||||| || |||||||||    
T  3215751 gtgtcaacacctggatgaaaattctaatatcctctaagatatagtttttgtttggtacattaagttcc-attttacacttttcattgggacattttagtg 3215849  T
Q  417 tagtaagccgtttaatactcttccac 442  Q
    |||| |||||||||||||||||||||    
T  3215850 tagt-agccgtttaatactcttccac 3215874  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 32342978 - 32343040
Alignment:
Q  8 acatattgtggtggtgccacctccatgaaaaatctagcaatgcgagaacttgccattcttaat 70  Q
    ||||| ||||||||||| |||||||||||||| || |||||||||||| |||||||| |||||    
T  32342978 acatactgtggtggtgctacctccatgaaaaaccttgcaatgcgagaatttgccattgttaat 32343040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 32350113 - 32350160
Alignment:
Q  8 acatattgtggtggtgccacctccatgaaaaatctagcaatgcgagaa 55  Q
    ||||| |||||||||||||||||||||||||| || ||||||||||||    
T  32350113 acatactgtggtggtgccacctccatgaaaaaccttgcaatgcgagaa 32350160  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 135 - 189
Target Start/End: Original strand, 32350207 - 32350261
Alignment:
Q  135 aaatgttttgtattgaggatgtgtttgaagcataagaacatggttcaatttataa 189  Q
    |||||||||||||| ||| ||||| |||||||| || ||| ||||||||||||||    
T  32350207 aaatgttttgtattaagggtgtgtatgaagcattaggacacggttcaatttataa 32350261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 299 - 442
Target Start/End: Original strand, 32350374 - 32350517
Alignment:
Q  299 tgggacagtgtttgatatgtgtcaaaacctggatggaaattat--aatatccttttggatatggtttttgtttgatacgttgagttccaaatttatactt 396  Q
    |||||||||||||| || ||| |||||| ||||| |||||| |   |||||||||  |||| | |||||||| |||||  ||||||||||| ||  ||||    
T  32350374 tgggacagtgtttggtaagtgccaaaacttggattgaaattcttatatatcctttaagatacgatttttgttggatacactgagttccaaa-ttgcactt 32350472  T
Q  397 ttcattgagaaattttagtgtagtaagccgtttaatactcttccac 442  Q
    ||| ||||||  ||| |||||||| ||| |||||| ||||||||||    
T  32350473 ttctttgagacctttcagtgtagt-agcagtttaacactcttccac 32350517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 498
Target Start/End: Original strand, 32343836 - 32343900
Alignment:
Q  436 cttccacttgtgtttatttc--atcctcacaatgcatgaaatctctcctcatttcaaacatgatg 498  Q
    |||| |||||||||||||||  |||||||||||| ||  ||||| | ||||||||||||||||||    
T  32343836 cttcgacttgtgtttatttctcatcctcacaatgaatacaatcttttctcatttcaaacatgatg 32343900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 299 - 351
Target Start/End: Original strand, 32343326 - 32343377
Alignment:
Q  299 tgggacagtgtttgatatgtgtcaaaacctggatggaaattataatatccttt 351  Q
    ||||||||||||||  |||||||||||||||||| | |||||| |||||||||    
T  32343326 tgggacagtgtttggcatgtgtcaaaacctggattg-aattattatatccttt 32343377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1437 (Bit Score: 76; Significance: 6e-35; HSPs: 1)
Name: scaffold1437
Description:

Target: scaffold1437; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 8 - 138
Target Start/End: Complemental strand, 663 - 532
Alignment:
Q  8 acatattgtggtggtgccacctccatgaaaaatctagcaatgcgagaacttgccattcttaatgtgaattaacttcaagtgttcaattg-gacaaaaggt 106  Q
    |||||||||||||||||||||||||||||||| || |||| ||||||||||| ||||||||||||||| ||| |||||||||||||||| |  |||| ||    
T  663 acatattgtggtggtgccacctccatgaaaaaccttgcaacgcgagaacttgtcattcttaatgtgaactaatttcaagtgttcaattgcggaaaaatgt 564  T
Q  107 gtaattgctaagagatagataggaatgaaaat 138  Q
    |||||  ||||||||||||| |||||||||||    
T  563 gtaatcactaagagatagattggaatgaaaat 532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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