View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17326_low_14 (Length: 510)
Name: NF17326_low_14
Description: NF17326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17326_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 463; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 28 - 498
Target Start/End: Complemental strand, 49653720 - 49653250
Alignment:
| Q |
28 |
aagatttaagacttgtaatctttccatgcatgaaatgaaaaagaactgaatagttgaaaacttaagttagtttgatttataagctcagtaccatcaatgc |
127 |
Q |
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| T |
49653720 |
aagatttaagacttgtaatctttccatgcatgaaatgaaaaagaactgaatagttgaaaacttaagttagtttgatttataagctcagtaccatcaatgc |
49653621 |
T |
|
| Q |
128 |
tctgaagaactttctttactttcctcctacaaccttcacagtggatagaaaccttcaagaaccatgtctgtgaaacaaaaccaactttagcttacaaaat |
227 |
Q |
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| T |
49653620 |
tctgaagaactttctttactttcctcctacaaccttcacagtggatagaaaccttcaagaaccatgtctgtgaaacaaaaccaagtttagcttacaaaat |
49653521 |
T |
|
| Q |
228 |
aaaaaacaaagaaagattttgacaatagggtgtgattgttgggttgaagtaacatgttacctgatacttcaaaggttgtgaggtagcatccattagagag |
327 |
Q |
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| T |
49653520 |
aaaaaacaaagaaagattttgacaatagggtgtgattgttgggttgaagtaacatgttacctgatacttcaaaggttgtgaggtagcatccattagagag |
49653421 |
T |
|
| Q |
328 |
aagtggttgggagagtgagagggaattggaaacttgaaatcaaaatgaaagtgagatgaggaaaatgccaagaaaacaaaggaaacaagccaagatgggt |
427 |
Q |
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| T |
49653420 |
aagtggttgggagagtgagagggaattggaaacttgaaatcaaaatgaaagtgagaagaggaaaatgccaagaaaacaaaggaaacaagccaagatgggt |
49653321 |
T |
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| Q |
428 |
accaaagtagtataatgtgacaatgacccaagaacacactgctccttctgttgcttttctctgccacttca |
498 |
Q |
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| T |
49653320 |
accaaagtagtataatgtgacaatgacccaagaacacactgctccttctgttgcttttctctgccacttca |
49653250 |
T |
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Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 114 - 197
Target Start/End: Original strand, 14382068 - 14382151
Alignment:
| Q |
114 |
agtaccatcaatgctctgaagaactttctttactttcctcctacaaccttcacagtggatagaaaccttcaagaaccatgtctg |
197 |
Q |
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|||||||||||||| || | |||||||||||||||| | || ||||||||||||||||||||||| ||||||||||||||||| |
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| T |
14382068 |
agtaccatcaatgcgctttaaaactttctttactttctttctgcaaccttcacagtggatagaaactttcaagaaccatgtctg |
14382151 |
T |
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