View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17326_low_16 (Length: 437)
Name: NF17326_low_16
Description: NF17326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17326_low_16 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 16 - 437
Target Start/End: Original strand, 2264524 - 2264944
Alignment:
| Q |
16 |
gaaatgaagtgatgaagaagatcagatcaattgttgaaaggagaaaatgagacaaaa-gtgatgtcgaaatgaaaatttgatttccaatttctttcaaaa |
114 |
Q |
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| T |
2264524 |
gaaatgaagtgatgaagaagatcagatcaattgttgaaaggagaaaatgagacaaaaagttatgtggaaatgaaaatttgatttccaatttctttcaaaa |
2264623 |
T |
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| Q |
115 |
tccggacaaattagtctctattacatggcattgagttgttgacttacacctctaaccacataaagttaacaaaaaaccaatacgnnnnnnnnnnnctgcc |
214 |
Q |
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| T |
2264624 |
tccggacaaattagtctctattacatggcattgagttgttgacttacgcctctaaccacataaagttaacaaaaaaccaatacgtttttttttt-ctgcc |
2264722 |
T |
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| Q |
215 |
ttgcgaggggtagcaataaacagttgaccactaataactaagttagttacatgtttctcactcaatttatcaatagaatattattagtgcagagtcaaat |
314 |
Q |
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| T |
2264723 |
ttgcgaggggtagcaataaacagttgaccactaataactaagttagttacatgtttctcactcaatttatcaatagaatattattagtgcagagtcaaat |
2264822 |
T |
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| Q |
315 |
tgttgtatctttctttgtaataccagataactaaaggaaaatcaaacagtcaaactaattaattaaattaacttaaactatgcaaaatacaaaatctgtt |
414 |
Q |
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| T |
2264823 |
tgttgtatctttctttgtaataccagataactaaaggaaaatcaaacagtcaaactaattaattaaattaacttaaactatgcaaaatacaaaatctcct |
2264922 |
T |
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| Q |
415 |
ttcatataaagctttgcttgaga |
437 |
Q |
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| T |
2264923 |
ttcatataaagc-ttgcttgaga |
2264944 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 152
Target Start/End: Complemental strand, 34399731 - 34399680
Alignment:
| Q |
100 |
caatttctttcaaaatccggacaaattagtctctattacatggcattgagttg |
152 |
Q |
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| T |
34399731 |
caatttctttcaaaatcc-gacaaattagtctttattacgtgacaatgagttg |
34399680 |
T |
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