View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17326_low_17 (Length: 419)
Name: NF17326_low_17
Description: NF17326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17326_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 18 - 408
Target Start/End: Complemental strand, 5811805 - 5811418
Alignment:
| Q |
18 |
agatctagagggccaagaagatactttcggagaggatgttgccaatgataagtctcaagggactgcaaccgaggaagaggagaaattatcaaatccagaa |
117 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5811805 |
agatctagagggccaagaagatattttcggagaggatgttgccaatgataagtctcaagggactgcaaccgaggaagaggagaaattatcaaatccagaa |
5811706 |
T |
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| Q |
118 |
gttaagaaataagttcctgagtcgtgtcgactgtttgtacgtaatctgccatacacgaccacgtactttcatagtgtttttcctgcttttccatttatta |
217 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5811705 |
gttaagaaagaagttcctgagtcgtgtcgactgtttgtacgtaatctgccatacacgaccacgtactttcatagtgtttttcctgcttttccatttatta |
5811606 |
T |
|
| Q |
218 |
tttttctactgaataaatatgtcttctgatagttaattttttatcttactaatatctttcaatgattttgtcatttcaattgatcttaatatattaatca |
317 |
Q |
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|||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
5811605 |
tttttctactgaatgaatatgtcttccgacagttaattttttatcttactaatatctttcaatgattttgtcatttcaa---atcttaatatattaatca |
5811509 |
T |
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| Q |
318 |
tgtgttggttttatcattttattgttattatgttgcagggaggaggaactggaagagtatttcagtcagtttggaagtgtctcacaggttc |
408 |
Q |
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| T |
5811508 |
tgtgttggttttatcattttattgttattatgttgcagggaggaagaactggaagagtatttcagtcagtttggaagtgtctcacaggttc |
5811418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 1e-38; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 50 - 187
Target Start/End: Complemental strand, 37743342 - 37743205
Alignment:
| Q |
50 |
aggatgttgccaatgataagtctcaagggactgcaaccgaggaagaggagaaattatcaaatccagaagttaagaaataagttcctgagtcgtgtcgact |
149 |
Q |
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||||||||||||||||||||||||||| || |||||| |||||||||| | |||||||||||||||||| ||||||| |||| ||||| |||||||||| |
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| T |
37743342 |
aggatgttgccaatgataagtctcaagtgaatgcaactgaggaagaggggcaattatcaaatccagaagataagaaaggagtttctgagccgtgtcgact |
37743243 |
T |
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| Q |
150 |
gtttgtacgtaatctgccatacacgaccacgtactttc |
187 |
Q |
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|||||| |||||||||||||| |||||||||| |||| |
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| T |
37743242 |
gtttgtccgtaatctgccatattcgaccacgtaatttc |
37743205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 18 - 182
Target Start/End: Complemental strand, 37764557 - 37764393
Alignment:
| Q |
18 |
agatctagagggccaagaagatactttcggagaggatgttgccaatgataagtctcaagggactgcaaccgaggaagaggagaaattatcaaatccagaa |
117 |
Q |
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||||||||| | ||||||| ||||| | ||| ||||||| ||||||||||||||||||| || | |||| |||||||||| | ||||||||||||||||| |
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| T |
37764557 |
agatctagaagaccaagaaaatactgttggaaaggatgtagccaatgataagtctcaagtgaattcaactgaggaagaggggcaattatcaaatccagaa |
37764458 |
T |
|
| Q |
118 |
gttaagaaataagttcctgagtcgtgtcgactgtttgtacgtaatctgccatacacgaccacgta |
182 |
Q |
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| ||||||| |||| ||||| |||||||||||||||| |||||||||||||| |||||||||| |
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| T |
37764457 |
gataagaaaggagtttctgagccgtgtcgactgtttgtccgtaatctgccatattcgaccacgta |
37764393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 18 - 187
Target Start/End: Original strand, 38601759 - 38601928
Alignment:
| Q |
18 |
agatctagagggccaagaagatactttcggagaggatgttgccaatgataagtctcaagggactgcaaccgaggaagaggagaaattatcaaatccagaa |
117 |
Q |
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||||||||| | ||||||| ||||| | ||| ||||||| ||||||||||||||||||| || |||||| |||||||||| | ||||||||||||||||| |
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| T |
38601759 |
agatctagaagaccaagaaaatactgttggaaaggatgtagccaatgataagtctcaagtgaatgcaactgaggaagaggggcaattatcaaatccagaa |
38601858 |
T |
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| Q |
118 |
gttaagaaataagttcctgagtcgtgtcgactgtttgtacgtaatctgccatacacgaccacgtactttc |
187 |
Q |
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||||||| |||| ||||| |||||||||||||||| | |||||||||||| |||||||||| |||| |
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| T |
38601859 |
tataagaaaggagtttctgagccgtgtcgactgtttgtccttaatctgccatattcgaccacgtaatttc |
38601928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 321 - 408
Target Start/End: Original strand, 38602054 - 38602141
Alignment:
| Q |
321 |
gttggttttatcattttattgttattatgttgcagggaggaggaactggaagagtatttcagtcagtttggaagtgtctcacaggttc |
408 |
Q |
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||||||||||| ||||||||||||| |||||||| |||||||||||||||||| |||||||||||||||| |||||||||||||||| |
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| T |
38602054 |
gttggttttatatttttattgttattctgttgcagtgaggaggaactggaagagcatttcagtcagtttggcagtgtctcacaggttc |
38602141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 321 - 405
Target Start/End: Complemental strand, 37743079 - 37742995
Alignment:
| Q |
321 |
gttggttttatcattttattgttattatgttgcagggaggaggaactggaagagtatttcagtcagtttggaagtgtctcacagg |
405 |
Q |
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||||||||||| ||||||||||||| |||||||| ||||||||| |||||||| |||||||||||||||| ||||||||||||| |
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| T |
37743079 |
gttggttttatatttttattgttattctgttgcagtgaggaggaattggaagagcatttcagtcagtttggcagtgtctcacagg |
37742995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 321 - 408
Target Start/End: Complemental strand, 37758514 - 37758427
Alignment:
| Q |
321 |
gttggttttatcattttattgttattatgttgcagggaggaggaactggaagagtatttcagtcagtttggaagtgtctcacaggttc |
408 |
Q |
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||||||||||| ||||||||||||| |||||| ||||||||||| |||||| |||||||||||||||| |||||||||||||||| |
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| T |
37758514 |
gttggttttatatttttattgttattccattgcagtgaggaggaactcgaagagcatttcagtcagtttggcagtgtctcacaggttc |
37758427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 321 - 408
Target Start/End: Complemental strand, 37764262 - 37764175
Alignment:
| Q |
321 |
gttggttttatcattttattgttattatgttgcagggaggaggaactggaagagtatttcagtcagtttggaagtgtctcacaggttc |
408 |
Q |
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||||||||||| ||||||||||||| |||||| ||||||||||| |||||| |||||||||||||||| |||||||||||||||| |
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| T |
37764262 |
gttggttttatatttttattgttattccattgcagtgaggaggaactcgaagagcatttcagtcagtttggcagtgtctcacaggttc |
37764175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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