View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17326_low_18 (Length: 417)
Name: NF17326_low_18
Description: NF17326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17326_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 1 - 402
Target Start/End: Complemental strand, 53106263 - 53105861
Alignment:
| Q |
1 |
cactcaccaaccgtggctgcaccaggctttgtggatcagtacttgtcacagatagatgtggatctatttcaaggatttcaaaatggaaagattgcaatgg |
100 |
Q |
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|||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53106263 |
cactcaccaaccgtagctgcactaggctttgtggatcagtacttgtcacagatagatgtggatctatttcaaggatttcaaaatggaaagattgcaatgg |
53106164 |
T |
|
| Q |
101 |
agaagtcacctcaagtctcgagtgcaagaggatcaattagtctggctaagaaatttaaagctcggacgccaagtgaagataaagacccattcaaatggg- |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |
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| T |
53106163 |
agaagtcacctcaagtctcgagtgcaagaggatcaattagtctggctaagaaatttaaagctcggacgcaaagtgaagataaagacccactcaaatgggg |
53106064 |
T |
|
| Q |
200 |
ctgacagtgatcaaaatttaaaagaagctggtattttctgtaaaaaacttgaagcatctttcagttttggaagccatggactgacgtataacagaagaag |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53106063 |
ctgacagtgatcaaaatttaaaagaagctggtattttctgtaaaaaacttgaagcatctttcagttttggaagccatggactgacgtataacagaagaag |
53105964 |
T |
|
| Q |
300 |
acagcaaaaaggtagtcgtcttcagaatcaaggaaaatgtagtgcaagtaatggatgtgatgagaaccaaggaaactatagtgcaagtaatcaatgtgat |
399 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53105963 |
acagcaaaaaggtagtcgtcttcagaaccaaggaaaatgtagtgcaagtaatggatgtgatgagaaccaaggaaactatagtgcaagtaatcaatgtgat |
53105864 |
T |
|
| Q |
400 |
gag |
402 |
Q |
| |
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||| |
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| T |
53105863 |
gag |
53105861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 382
Target Start/End: Complemental strand, 43918967 - 43918586
Alignment:
| Q |
1 |
cactcaccaaccgtggctgcaccaggctttgtggatcagtacttgtcacagatagatgtggatctatttcaaggatttcaaaatggaaagattgcaatgg |
100 |
Q |
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|||||||||||||| ||||||| ||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
43918967 |
cactcaccaaccgtagctgcactaggtttcgtggatcagtacttgtcatcaatagatgtggatctatttcaaggatttcaaaatggaaagattgctatgg |
43918868 |
T |
|
| Q |
101 |
agaagtcacctcaagtctcgagtgcaagaggatcaattagtctggctaagaaatttaaagctcggacgccaagtgaagataaagacccattcaaatgggc |
200 |
Q |
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||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||| |||| || ||||||||||||||||||||||||||| |
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| T |
43918867 |
agaagtcacctcaagtctcgagtgcgagaggatcgattagtctggctaagaaagttaaagctcaaacgcaaaatgaagataaagacccattcaaatgggc |
43918768 |
T |
|
| Q |
201 |
tgacagtgatcaaaatttaaaagaagctggtattttctgtaaaaaacttgaagcatctttcagttttggaagccatggactgacgtataacagaagaaga |
300 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| | |
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| T |
43918767 |
tgacaaggatcaaaatttaaaagaagctggtattttctgtaaaaaacttgaagcatctttcaattttggaagccatggactgacgtataagagaagaaaa |
43918668 |
T |
|
| Q |
301 |
cagcaaaaaggtagtcgtcttcagaatcaaggaaaatgtagtgcaagtaatggatgtgatgagaaccaaggaaactatagtg |
382 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43918667 |
cagcaaaaaggtagtcgtcttcagaaccaaggaaaatgtagtgcaagtaatggatgtgatgagaaccaaggaaactatagtg |
43918586 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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