View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17326_low_19 (Length: 406)
Name: NF17326_low_19
Description: NF17326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17326_low_19 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 406
Target Start/End: Original strand, 26484434 - 26484855
Alignment:
| Q |
1 |
ttgcaagatttagtaccaggatgcaacaaaattgcaggcaaagctggaatgcttgatgaaattattaactatgttcagtctcttcaaagacaagtcgagg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26484434 |
ttgcaagatttagtaccaggatgcaacaaaattgcaggcaaagctggaatgcttgatgaaattattaactatgttcagtctcttcaaagacaagtcgagg |
26484533 |
T |
|
| Q |
101 |
ttagagttctagtcctgtttgatctatcatgttttagtttataatatggtatctattttaagaata----------------actgaactgtacattatc |
184 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
26484534 |
ttagagttctagtcctgtttgatctatcatgttttagtttataatatggtatctattttaagaatagtttcaagtccatctaactgaactgtacattatc |
26484633 |
T |
|
| Q |
185 |
accaaatgcagttcttgtcaatgaaattagcagctgtaaacccaagacttgacttcaacattgatgaattgtttgccaaagaggtaaggacaatgcaagt |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26484634 |
accaaatgcagttcttgtcaatgaaattagcagctgtaaacccaagacttgacttcaacattgatgaattgtttgccaaagaggtaaggacaatgcaagt |
26484733 |
T |
|
| Q |
285 |
tgtagaaatttaaggttgtatcagctacatttgaccgtaattaaagcttatgagtcaacatttgaccgcgattatccacagtatcgcgaatcacaacaca |
384 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26484734 |
tgtagaaatttaaggctgtatcagctacatttgaccgtaattaaagcttatgagtcaacatttgaccgcgattatccacagtatcgcgaatcacaacaca |
26484833 |
T |
|
| Q |
385 |
gccataaattattttagaatgc |
406 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
26484834 |
gccataaattattttagaatgc |
26484855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 81; Significance: 5e-38; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 54616020 - 54616120
Alignment:
| Q |
1 |
ttgcaagatttagtaccaggatgcaacaaaattgcaggcaaagctggaatgcttgatgaaattattaactatgttcagtctcttcaaagacaagtcgagg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
54616020 |
ttgcaagatttagtaccaggatgcaacaaaattacaggaaaagctggaatgcttgatgaaatcattaactatgttcagtctcttcaaaaacaagttgagg |
54616119 |
T |
|
| Q |
101 |
t |
101 |
Q |
| |
|
| |
|
|
| T |
54616120 |
t |
54616120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 251
Target Start/End: Original strand, 54616190 - 54616250
Alignment:
| Q |
191 |
tgcagttcttgtcaatgaaattagcagctgtaaacccaagacttgacttcaacattgatga |
251 |
Q |
| |
|
||||||||||||||||||||||||| |||| || ||||| ||||| ||||| |||||||| |
|
|
| T |
54616190 |
tgcagttcttgtcaatgaaattagctactgtgaatccaaggcttgatttcaatattgatga |
54616250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University