View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17326_low_20 (Length: 404)

Name: NF17326_low_20
Description: NF17326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17326_low_20
NF17326_low_20
[»] chr5 (13 HSPs)
chr5 (158-340)||(9677682-9677867)
chr5 (46-209)||(12107191-12107360)
chr5 (172-404)||(10102242-10102468)
chr5 (165-239)||(9660676-9660750)
chr5 (46-114)||(9660773-9660841)
chr5 (58-113)||(9676342-9676396)
chr5 (355-404)||(9676084-9676133)
chr5 (355-404)||(10213685-10213734)
chr5 (267-355)||(9676163-9676249)
chr5 (197-233)||(12106377-12106413)
chr5 (76-114)||(10102179-10102217)
chr5 (299-355)||(10213765-10213821)
chr5 (267-342)||(12108062-12108138)


Alignment Details
Target: chr5 (Bit Score: 90; Significance: 2e-43; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 158 - 340
Target Start/End: Complemental strand, 9677867 - 9677682
Alignment:
Q  158 tgtcaacaattcttctcttgcaagcaaggtttagagctgacttttagaacttcacaccctgtgtccattctcttttct----taaaacaaaggttgggtg 253  Q
    ||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||    ||||||||||| |||||     
T  9677867 tgtcaacaattctgctcttgcaaacaaggtttggagctgacttttagaacttcacaccatgtgtccattctcttttcttaaataaaacaaaggctgggtc 9677768  T
Q  254 taaggccatcatgacagatttgtttgatggtgtgagaatttgacaacaaaatgcagatctgcatttatgagtcatttcaaaccagca 340  Q
    ||| |||||||| ||| |||||||||||||||| | | |||| ||| |||||||| || |||||||| ||| ||||||||| |||||    
T  9677767 taatgccatcataacaaatttgtttgatggtgt-aaactttggcaataaaatgcaaatatgcatttacgagccatttcaaaacagca 9677682  T

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Target: chr5; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 46 - 209
Target Start/End: Complemental strand, 12107360 - 12107191
Alignment:
Q  46 atacttgacttagataacattctgtggtgtaacacaaatagtaaaaagcattcagagttgctacaatga-------aagtaaaaacaaccacacattatt 138  Q
    |||| |||||| |||| ||||||| |||| ||||||| |||||||||||||||||||||||||||||||       ||||| |||||||||| |||||||    
T  12107360 atacatgactttgatatcattctgaggtgcaacacaa-tagtaaaaagcattcagagttgctacaatgactttgataagtagaaacaaccacgcattatt 12107262  T
Q  139 aagcaaacaattgcactagtgtcaacaattcttctcttgcaagcaaggtttagagctgacttttagaactt 209  Q
    || ||||   ||| |||| ||||||||||||| ||||||||||||||||||  |||| |||||||||||||    
T  12107261 aaacaaaatgttgtactattgtcaacaattctgctcttgcaagcaaggtttgaagcttacttttagaactt 12107191  T

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Target: chr5; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 172 - 404
Target Start/End: Original strand, 10102242 - 10102468
Alignment:
Q  172 ctcttgcaagcaaggtttagagctgacttttagaacttcacaccctgtgtccattctcttttcttaaaacaaaggttgggtgtaaggccatcatgacaga 271  Q
    |||||||||| |||| || ||| |||||||||||||||||  || |||||||||||||||||| ||||||||||||||||||||| ||   ||| |||||    
T  10102242 ctcttgcaaggaaggcttggagatgacttttagaacttcattccatgtgtccattctcttttcctaaaacaaaggttgggtgtaatgc---cataacaga 10102338  T
Q  272 tttgtttgatggtg-------tgagaatttgacaacaaaatgcagatctgcatttatgagtcatttcaaaccagcattcatactctgtgtagtgcaacaa 364  Q
    |||| |||||||||       |||| ||||| ||||||||| || ||||| |||||||||||||||||||         ||| | ||   ||||||||||    
T  10102339 tttgattgatggtgtgaggactgaggatttggcaacaaaatacaaatctgtatttatgagtcatttcaaa---------ata-tttgccaagtgcaacaa 10102428  T
Q  365 tatgaattatacaataaagtatactatgttctttaaaaaa 404  Q
    ||||||||||||||| || | |||||||||||||||||||    
T  10102429 tatgaattatacaatgaattgtactatgttctttaaaaaa 10102468  T

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Target: chr5; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 165 - 239
Target Start/End: Complemental strand, 9660750 - 9660676
Alignment:
Q  165 aattcttctcttgcaagcaaggtttagagctgacttttagaacttcacaccctgtgtccattctcttttcttaaa 239  Q
    |||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  9660750 aattctgctcttgcaagcaaggtttggagctgacttttagaacttcacaccatgtgtccgttctcttttcttaaa 9660676  T

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Target: chr5; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 46 - 114
Target Start/End: Complemental strand, 9660841 - 9660773
Alignment:
Q  46 atacttgacttagataacattctgtggtgtaacacaaatagtaaaaagcattcagagttgctacaatga 114  Q
    |||| |||||| |||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||    
T  9660841 atacatgactttgataacattctgaggtgcaacacaaatagtaaaaagcattcagagtttctacaatga 9660773  T

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Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 58 - 113
Target Start/End: Complemental strand, 9676396 - 9676342
Alignment:
Q  58 gataacattctgtggtgtaacacaaatagtaaaaagcattcagagttgctacaatg 113  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||    
T  9676396 gataacattctgaggtgcaacacaaatagtaaaaagcattcagagtt-ctacaatg 9676342  T

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Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 355 - 404
Target Start/End: Complemental strand, 9676133 - 9676084
Alignment:
Q  355 agtgcaacaatatgaattatacaataaagtatactatgttctttaaaaaa 404  Q
    ||||||||||||| ||||||||||| |||| |||||||||||||||||||    
T  9676133 agtgcaacaatataaattatacaatgaagtgtactatgttctttaaaaaa 9676084  T

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Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 355 - 404
Target Start/End: Complemental strand, 10213734 - 10213685
Alignment:
Q  355 agtgcaacaatatgaattatacaataaagtatactatgttctttaaaaaa 404  Q
    |||||||||||||||||||||| || |||| |||||||||||||||||||    
T  10213734 agtgcaacaatatgaattatacgatgaagtgtactatgttctttaaaaaa 10213685  T

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Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 267 - 355
Target Start/End: Complemental strand, 9676249 - 9676163
Alignment:
Q  267 acagatttgtttgatggtgtgagaatttgacaacaaaatgcagatctgcatttatgagtcatttcaaaccagcattcatactctgtgta 355  Q
    ||||||||||||||| | ||||| |||||  |||||||| || |||||||||  || ||||||||||| ||||||||||| ||| ||||    
T  9676249 acagatttgtttgatagcgtgaggatttggaaacaaaatacaaatctgcatt--tgtgtcatttcaaagcagcattcataatctctgta 9676163  T

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Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 233
Target Start/End: Complemental strand, 12106413 - 12106377
Alignment:
Q  197 acttttagaacttcacaccctgtgtccattctctttt 233  Q
    ||||||||||||||||||| |||||||||||||||||    
T  12106413 acttttagaacttcacaccatgtgtccattctctttt 12106377  T

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Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 114
Target Start/End: Original strand, 10102179 - 10102217
Alignment:
Q  76 aacacaaatagtaaaaagcattcagagttgctacaatga 114  Q
    |||| |||||||||||||||||||||||| |||||||||    
T  10102179 aacataaatagtaaaaagcattcagagtttctacaatga 10102217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 299 - 355
Target Start/End: Complemental strand, 10213821 - 10213765
Alignment:
Q  299 acaaaatgcagatctgcatttatgagtcatttcaaaccagcattcatactctgtgta 355  Q
    |||||||||| |||||||||||  ||||||||  || ||||||||||||| ||||||    
T  10213821 acaaaatgcaaatctgcatttacaagtcattttgaagcagcattcatactttgtgta 10213765  T

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Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 267 - 342
Target Start/End: Complemental strand, 12108138 - 12108062
Alignment:
Q  267 acagatttgtttgatggtgtgagaatttgacaacaaaa-tgcagatctgcatttatgagtcatttcaaaccagcatt 342  Q
    ||||||| |||| |||||||||| ||||   ||||||| | || ||||||||| ||||||||||||||| |||||||    
T  12108138 acagattggtttaatggtgtgaggatttaggaacaaaaatacaaatctgcattcatgagtcatttcaaagcagcatt 12108062  T

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